Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002311

Physical Location & Seq

Genomic Coordinates Reverse (-)

5767157 .. 5768371

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05461.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGACACCAGAGCTGTTGTTCCTCCACAACCCAGAGGATGGAGAGGGCTATCTGGATTGTTCTCTATCAGGGAGAATGGTGGTTCTGATCCAGAGTTGATTGAGTCTGCTTCTCCTAGAAAAGTGGCTTATAGTTTCTATCATATTAGAAATGTCAACCAGTTGCGTATGGATGACATCCCAAAGCTGCTGGCAGAGTACAAACAACTACTATCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4

Protein Analysis

74

Amino Acids

8.3

Weight (kDa)

9.3

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36360 AT2G36360 AT2G36360 AT2G36360 AT2G36360
fragaria_vesca	FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38190 FvH4_5g38190 FvH4_7g05461
malus_domestica	MD02G1248400.v1.1 MD07G1067800.v1.1
prunus_persica	Prupe.2G084800_v2.0.a1 Prupe.2G084800_v2.0.a1
pyrus_communis	pycom02g21300 pycom07g05200
rosa_chinensis	RchiOBHm_Chr1g0333031 RchiOBHm_Chr1g0333101 RchiOBHm_Chr1g0333111 RchiOBHm_Chr1g0333981 RchiOBHm_Chr1g0333991
rosa_laevigata	RLG00000029628
rosa_multiflora	Rmu_sc0024961.1_g000002
rosa_roxburghii	Rroxscaffold_4G00317820
rosa_rugosa	Rorug01G0106600 Rorug01G0106600 Rorug01G0106700 Rorug01G0106800
rosa_samantha	Rh1AG129600 Rh1AG130200 Rh1BG099100 Rh1CG124000 Rh1DG135700
rosa_wichuraiana	Rw1G010260 Rw1G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	39
AclWI	GGATC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	39
AluBI	AGCT	2 cut(s)	14, 187
AluI	AGCT	2 cut(s)	14, 187
AlwI	GGATC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	160
BseGI	GGATG	3 cut(s)	44, 177, 178
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	192
BstF5I	GGATG	3 cut(s)	44, 177, 178
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	44, 177, 178
Cac8I	GCNNGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	199
CviJI	RGCY	4 cut(s)	14, 49, 128, 187
CviKI_1	RGCY	4 cut(s)	14, 49, 128, 187
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
FaiI	YATR	3 cut(s)	132, 144, 170
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	3 cut(s)	51, 164, 185
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	54, 92
Hpy8I	GTNNAC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	22, 39, 46, 55, 105, 173, 176
Lsp1109I	GCAGC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	117
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MluCI	AATT	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	3 cut(s)	29, 33, 38
MseI	TTAA	1 cut(s)	220
NdeII	GATC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	220
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	113
SetI	ASST	2 cut(s)	16, 189
SgeI	CNNG	8 cut(s)	21, 45, 66, 82, 104, 129, 172, 203
Sse9I	AATT	1 cut(s)	217
SspMI	CTAG	1 cut(s)	117
TasI	AATT	1 cut(s)	217
TatI	WGTACW	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	220
Tru9I	TTAA	1 cut(s)	220
TseI	GCWGC	1 cut(s)	187
Van91I	CCANNNNNTGG	1 cut(s)	39
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.