AT2G36815
ERF Family

negative regulation of type I interferon-mediated signaling pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003428
Physical Location & Seq
Forward (+)
15440769 .. 15441331
563 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36815.2

Sequence Viewer

Length: 324 bp
ATGAATTTTCATGGTAAGAGTAAGAGAGATAGGCATGGAAGGCGGAAGAAGCAGAGAGACGAAATCGAGATCAGAGAATGGGAGTTAACTAAAGCTCGTAGAAGAGATGAGGAATTGCTTGCTTCTCAAGAAAGAGCACTACACGCTGGTGTTGAAGCTGGTGTGAGAGAACTTCTTGATGGGAAGACTCACGCGGAGCTTGTACAACTGCAGTTTGACATCGAATCGCAGCTGCGCTCTGGAGCAGCCAAAGTGGTAGAGTATAGGGAAGCGGTTCTTAAACGCCTCAATAGATATAAAGCAAAGGCTTGCTTGAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000578 GO:0001654 GO:0001817 GO:0001818 GO:0001932 GO:0001933 GO:0001959 GO:0001960 GO:0002237 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003002 GO:0003006 GO:0003407 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007346 GO:0007350 GO:0007351 GO:0007389 GO:0007423 GO:0007548 GO:0008150 GO:0008152 GO:0008380 GO:0008406 GO:0008595 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009892 GO:0009948 GO:0009950 GO:0009952 GO:0009953 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010154 GO:0010389 GO:0010467 GO:0010468 GO:0010556 GO:0010563 GO:0010564 GO:0010605 GO:0010646 GO:0010648 GO:0010971 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019220 GO:0019222 GO:0022414 GO:0022607 GO:0023051 GO:0023057 GO:0030111 GO:0030334 GO:0030335 GO:0031323 GO:0031324 GO:0031326 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0031664 GO:0031665 GO:0031974 GO:0031981 GO:0032088 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032479 GO:0032480 GO:0032496 GO:0032501 GO:0032502 GO:0032648 GO:0032677 GO:0032680 GO:0032688 GO:0032717 GO:0032720 GO:0032879 GO:0032991 GO:0033993 GO:0034097 GO:0034121 GO:0034122 GO:0034612 GO:0034641 GO:0035282 GO:0040012 GO:0040017 GO:0040019 GO:0042221 GO:0042325 GO:0042326 GO:0043010 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043433 GO:0043900 GO:0043901 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045137 GO:0045595 GO:0045787 GO:0045824 GO:0045931 GO:0045936 GO:0045995 GO:0046483 GO:0048316 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051172 GO:0051174 GO:0051239 GO:0051240 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051259 GO:0051260 GO:0051270 GO:0051272 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0060041 GO:0060255 GO:0060338 GO:0060339 GO:0060759 GO:0060761 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070555 GO:0070887 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071347 GO:0071356 GO:0071396 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090068 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902494 GO:1902749 GO:1902751 GO:1903506 GO:1903555 GO:1903556 GO:1990904 GO:2000026 GO:2000112 GO:2000145 GO:2000147 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CactinC_cactus Cactin_mid

Protein Analysis

107

Amino Acids

12.58

Weight (kDa)

9.99

Isoelectric Point (pI)

60.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cactin_mid PF10312 16 - 101 1.9e-16 Conserved mid region of cactin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 194
AciI CCGC 3 cut(s) 43, 194, 272
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 204
AgsI TTSAA 2 cut(s) 155, 316
AleI CACNNNNGTG 1 cut(s) 147
AluBI AGCT 4 cut(s) 95, 158, 199, 232
AluI AGCT 4 cut(s) 95, 158, 199, 232
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 229, 232, 245
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 219, 241, 257
BccI CCATC 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 209
BisI GCNGC 3 cut(s) 230, 233, 246
BlsI GCNGC 3 cut(s) 231, 234, 247
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 111
BseXI GCAGC 3 cut(s) 219, 241, 257
Bsh1236I CGCG 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 51
BsmBI CGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 1 cut(s) 69
BspACI CCGC 3 cut(s) 43, 194, 272
BspFNI CGCG 1 cut(s) 194
BspMAI CTGCAG 1 cut(s) 213
BsrGI TGTACA 1 cut(s) 202
BssMI GATC 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 97
BstAUI TGTACA 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 120, 310
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 3 cut(s) 40, 49, 143
BstSFI CTRYAG 1 cut(s) 209
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 219, 241, 257
BstV2I GAAGAC 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 120, 310
CfoI GCGC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 203
CviAII CATG 2 cut(s) 11, 35
CviJI RGCY 6 cut(s) 95, 158, 199, 232, 248, 308
CviKI_1 RGCY 6 cut(s) 95, 158, 199, 232, 248, 308
CviQI GTAC 1 cut(s) 203
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 2 cut(s) 14, 38
FaiI YATR 4 cut(s) 12, 36, 264, 297
FalI AAGNNNNNCTT 3 cut(s) 261, 293, 296
FatI CATG 2 cut(s) 10, 34
Fnu4HI GCNGC 3 cut(s) 230, 233, 246
Fsp4HI GCNGC 3 cut(s) 230, 233, 246
GlaI GCGC 1 cut(s) 236
GluI GCNGC 3 cut(s) 230, 233, 246
GsuI CTGGAG 1 cut(s) 261
HhaI GCGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 14, 38
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 2 cut(s) 187, 224
HpaI GTTAAC 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 4 cut(s) 67, 128, 176, 240
Hpy8I GTNNAC 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 49, 143
Hsp92II CATG 2 cut(s) 14, 38
HspAI GCGC 1 cut(s) 235
KspAI GTTAAC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 196, 242
LpnPI CCDG 3 cut(s) 132, 144, 225
Lsp1109I GCAGC 3 cut(s) 219, 241, 257
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 3 cut(s) 58, 114, 196
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 2 cut(s) 4, 113
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 2 cut(s) 103, 296
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 2 cut(s) 86, 279
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 232
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 40, 49, 143
NdeII GATC 1 cut(s) 69
NlaIII CATG 2 cut(s) 14, 38
OliI CACNNNNGTG 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 3 cut(s) 231, 234, 247
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 2 cut(s) 86, 279
SatI GCNGC 3 cut(s) 230, 233, 246
Sau3AI GATC 1 cut(s) 69
SchI GAGTC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 139
SetI ASST 4 cut(s) 97, 160, 201, 234
SfcI CTRYAG 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 2 cut(s) 4, 113
SsiI CCGC 3 cut(s) 43, 194, 272
TaqI TCGA 2 cut(s) 66, 222
TasI AATT 2 cut(s) 4, 113
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 86, 279
Tru9I TTAA 2 cut(s) 86, 279
TseI GCWGC 3 cut(s) 229, 232, 245
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 4
XmnI GAANNNNTTC 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.