Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003428

Physical Location & Seq

Genomic Coordinates Reverse (-)

16010837 .. 16014046

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1102100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTTTCCGTTTCAAGTCAAATGTTTATCTCTATTTAATGTCCAGTGTGTCTTATGTTTCAATGTCATAATTTGGAATCATAATTCACTCTGGCATTTGACATGTACAATGCAGGGATTGACTGTAAAGGAAATGGAAGAGCTTCGAGATGACATCAAAATGCATCTTGATTTGGACAGGGCAACAGAAACACATGTGAAGTACTGGGAGGCACTTTTAGTGGTTTATGATTGGGAGCTAGCGGAAGGTCGTAAAAAAGATGCAATAGATCGAGCTAAGGTTCGTGGAGAGGAACCTCCTTCTGAGTTGCTTGCGGAACAAAGAGGCTTGCATACTAGCGTTGAAGCAGATGTCAAGAACCTCTTGGAAGGAAAGACTTTCTGGGAATTAGAGGAATTACAGTCCAAAATCGAGTCAGAAATGTGTTCTGGAACAGCCAAGGTTGTTGAGTATTGGGAGGCTGTTCTCACACGCCTCCATATATTCAAGGCCAAGGCTTGTTTGAAAGAAATCCATGCTAAAATGTTGCACAAGCATTTGCAACGGCTTGTGAAACGGGAGGGTGGTGAAAAGAACTTGGATGAGGTTCACGATTCACAAACCGAAAAGGGGAAGAGTGAGCCTGGTGTCAAAGATGCTCAAACATTTTCCATGGAGGAGGAGATTCATGTGGCTGAGGAAGAGGCCGGGTTGTTTTCACCAGAGCTGTTGCATGTAGATGAAAATGAGGAAGTAATCAACCCTGAAGAGGACAAGGCTATACTGGAAGGGAAGCGTGTAGCCATGTCCATGGGAGACGTGGTTGAAGGAGATGCAGTTTTTGGCATGGGTTCTGAAGTGAACCTTGACTCACAGGTATACTGGTGGCATGACAAGTACCGACCTAGAAAGCCGAAATATTTCAACCGTGTTTACATCGGATATGAATGGAACAAGTACAATCAGACTCACTATGATCATGATAACCCTCCTCCGAAGATTGTGCAAGGATACAAGTTGAACATCTTCTATCCGGACCTTGTTGACAAGACGAAGGCCCCACATTATATGATAGAGAAGGATGGCGACAGCAGTGAGATATGCATTACAAGGTTCCATGCAGGGCCACCCCAGGAGGACATGGCGTTCTGGATAGTAAACAAAGAATGGGAATACTCGCACAAAAAGGGGGTTAAAATGCACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CactinC_cactus Cactin_mid

Protein Analysis

396

Amino Acids

46.05

Weight (kDa)

5.39

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cactin_mid	PF10312	37 - 172	2.1e-32	Conserved mid region of cactin
CactinC_cactus	PF09732	289 - 393	8.2e-47	Cactus-binding C-terminus of cactin protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03910 AT1G03910 AT2G36815 AT2G36815
fragaria_vesca	FvH4_6g17312 FvH4_6g17312 FvH4_6g17312 FvH4_6g17312 FvH4_6g17312
malus_domestica	MD12G1102100.v1.1 MD14G1096200.v1.1
prunus_persica	Prupe.7G122300_v2.0.a1
pyrus_communis	pycom14g09420
rosa_chinensis	RchiOBHm_Chr3g0471451 RchiOBHm_Chr3g0471601
rosa_laevigata	RLG00000024153 RLG00000024161 RLG00000024177
rosa_multiflora	Rmu_sc0006582.1_g000009 Rmu_sc0008048.1_g000005 Rmu_sc0037090.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409750 Rroxscaffold_6G00409940
rosa_rugosa	Rorug03G0117800 Rorug03G0118500
rosa_samantha	Rh3AG167700 Rh3AG169100 Rh3AG169200 Rh3BG193200 Rh3BG194800 Rh3CG183600 Rh3CG185500 Rh3DG180000 Rh3DG182300
rosa_wichuraiana	Rw3G015800 Rw3G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	858
AccIII	TCCGGA	1 cut(s)	1012
AciI	CCGC	2 cut(s)	242, 314
AcuI	CTGAAG	2 cut(s)	765, 855
AfaI	GTAC	4 cut(s)	106, 203, 878, 938
AfiI	CCNNNNNNNGG	2 cut(s)	609, 748
AflIII	ACRYGT	2 cut(s)	101, 193
AgsI	TTSAA	8 cut(s)	14, 61, 344, 487, 505, 806, 904, 1000
AjiI	CACGTC	1 cut(s)	799
AjnI	CCWGG	2 cut(s)	622, 1110
AloI	GAACNNNNNNTCC	2 cut(s)	1109, 1141
AluBI	AGCT	4 cut(s)	142, 238, 275, 706
AluI	AGCT	4 cut(s)	142, 238, 275, 706
Alw26I	GTCTC	1 cut(s)	789
Aor13HI	TCCGGA	1 cut(s)	1012
AoxI	GGCC	4 cut(s)	489, 684, 1035, 1103
Asp700I	GAANNNNTTC	3 cut(s)	141, 899, 1004
AspS9I	GGNCC	3 cut(s)	1015, 1036, 1103
AsuC2I	CCSGG	1 cut(s)	688
AsuHPI	GGTGA	2 cut(s)	578, 690
AsuNHI	GCTAGC	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	1015
BbvCI	CCTCAGC	1 cut(s)	675
BccI	CCATC	1 cut(s)	1055
BceAI	ACGGC	1 cut(s)	560
BcgI	CGANNNNNNTGC	2 cut(s)	964, 998
BciT130I	CCWGG	2 cut(s)	624, 1112
BciVI	GTATCC	1 cut(s)	983
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	1 cut(s)	789
BfaI	CTAG	3 cut(s)	239, 336, 885
BfuI	GTATCC	1 cut(s)	983
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	3 cut(s)	624, 688, 1112
Bme18I	GGWCC	1 cut(s)	1015
BmgBI	CACGTC	1 cut(s)	799
BmgT120I	GGNCC	3 cut(s)	1015, 1036, 1103
BmiI	GGNNCC	3 cut(s)	294, 1038, 1094
BmrFI	CCNGG	3 cut(s)	624, 688, 1112
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	4 cut(s)	172, 250, 625, 802
BmtI	GCTAGC	1 cut(s)	242
BmuI	ACTGGG	1 cut(s)	214
Bpu10I	CCTNAGC	2 cut(s)	276, 675
BpuMI	CCSGG	1 cut(s)	688
BsaJI	CCNNGG	5 cut(s)	438, 492, 651, 789, 1110
BsaWI	WCCGGW	1 cut(s)	1012
BsaXI	ACNNNNNCTCC	4 cut(s)	786, 801, 816, 831
Bsc4I	CCNNNNNNNGG	2 cut(s)	609, 748
Bse1I	ACTGG	4 cut(s)	43, 209, 768, 866
BseAI	TCCGGA	1 cut(s)	1012
BseBI	CCWGG	2 cut(s)	624, 1112
BseDI	CCNNGG	5 cut(s)	438, 492, 651, 789, 1110
BseGI	GGATG	2 cut(s)	586, 1066
BseLI	CCNNNNNNNGG	2 cut(s)	609, 748
BseMII	CTCAG	2 cut(s)	294, 666
BseNI	ACTGG	4 cut(s)	43, 209, 768, 866
BseRI	GAGGAG	3 cut(s)	671, 674, 960
BshFI	GGCC	4 cut(s)	491, 686, 1037, 1105
BsiSI	CCGG	2 cut(s)	687, 1013
BslI	CCNNNNNNNGG	2 cut(s)	609, 748
BsmAI	GTCTC	1 cut(s)	789
BsmBI	CGTCTC	1 cut(s)	789
BsnI	GGCC	4 cut(s)	491, 686, 1037, 1105
Bsp13I	TCCGGA	1 cut(s)	1012
Bsp1407I	TGTACA	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	268, 955
Bsp19I	CCATGG	2 cut(s)	651, 789
BspACI	CCGC	2 cut(s)	242, 314
BspANI	GGCC	4 cut(s)	491, 686, 1037, 1105
BspCNI	CTCAG	2 cut(s)	295, 667
BspEI	TCCGGA	1 cut(s)	1012
BspHI	TCATGA	1 cut(s)	958
BspLI	GGNNCC	3 cut(s)	294, 1038, 1094
BspOI	GCTAGC	1 cut(s)	242
BspQI	GCTCTTC	1 cut(s)	132
BsrGI	TGTACA	1 cut(s)	104
BsrI	ACTGG	4 cut(s)	43, 209, 768, 866
BssECI	CCNNGG	5 cut(s)	438, 492, 651, 789, 1110
BssMI	GATC	2 cut(s)	268, 955
BssNAI	GTATAC	1 cut(s)	859
BssT1I	CCWWGG	4 cut(s)	438, 492, 651, 789
Bst1107I	GTATAC	1 cut(s)	859
Bst2UI	CCWGG	2 cut(s)	624, 1112
Bst4CI	ACNGT	3 cut(s)	124, 402, 908
Bst6I	CTCTTC	4 cut(s)	132, 608, 675, 741
BstAUI	TGTACA	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	240, 312, 329
BstDEI	CTNAG	3 cut(s)	276, 303, 675
BstDSI	CCRYGG	2 cut(s)	651, 789
BstF5I	GGATG	2 cut(s)	586, 1066
BstKTI	GATC	2 cut(s)	271, 958
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	2 cut(s)	268, 955
BstNI	CCWGG	2 cut(s)	624, 1112
BstNSI	RCATGY	3 cut(s)	105, 197, 716
BstSCI	CCNGG	3 cut(s)	622, 686, 1110
BstXI	CCANNNNNNTGG	1 cut(s)	790
BstZ17I	GTATAC	1 cut(s)	859
BsuI	GTATCC	1 cut(s)	983
BsuRI	GGCC	4 cut(s)	491, 686, 1037, 1105
BtgI	CCRYGG	2 cut(s)	651, 789
BtrI	CACGTC	1 cut(s)	799
BtsCI	GGATG	2 cut(s)	586, 1066
BtsI	GCAGTG	1 cut(s)	1078
BtsIMutI	CAGTG	2 cut(s)	50, 1078
Cac8I	GCNNGC	3 cut(s)	240, 312, 329
CciI	TCATGA	1 cut(s)	958
Cfr13I	GGNCC	3 cut(s)	1015, 1036, 1103
Csp6I	GTAC	4 cut(s)	105, 202, 877, 937
CviQI	GTAC	4 cut(s)	105, 202, 877, 937
DdeI	CTNAG	3 cut(s)	276, 303, 675
DpnI	GATC	2 cut(s)	270, 957
DpnII	GATC	2 cut(s)	268, 955
Eam1104I	CTCTTC	4 cut(s)	132, 608, 675, 741
EarI	CTCTTC	4 cut(s)	132, 608, 675, 741
Eco130I	CCWWGG	4 cut(s)	438, 492, 651, 789
Eco47I	GGWCC	1 cut(s)	1015
Eco57I	CTGAAG	2 cut(s)	765, 855
EcoO109I	RGGNCCY	1 cut(s)	1036
EcoRII	CCWGG	2 cut(s)	622, 1110
EcoT14I	CCWWGG	4 cut(s)	438, 492, 651, 789
EcoT22I	ATGCAT	2 cut(s)	165, 1085
ErhI	CCWWGG	4 cut(s)	438, 492, 651, 789
Esp3I	CGTCTC	1 cut(s)	789
FalI	AAGNNNNNCTT	4 cut(s)	347, 379, 828, 860
FbaI	TGATCA	1 cut(s)	955
FblI	GTMKAC	1 cut(s)	858
FokI	GGATG	2 cut(s)	593, 1073
FspBI	CTAG	3 cut(s)	239, 336, 885
HaeIII	GGCC	4 cut(s)	491, 686, 1037, 1105
HapII	CCGG	2 cut(s)	687, 1013
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HinfI	GANTC	6 cut(s)	76, 413, 593, 664, 848, 946
HpaII	CCGG	2 cut(s)	687, 1013
HphI	GGTGA	2 cut(s)	578, 690
Hpy166II	GTNNAC	6 cut(s)	589, 841, 859, 913, 1024, 1138
Hpy188I	TCNGA	6 cut(s)	304, 418, 835, 920, 945, 975
Hpy188III	TCNNGA	8 cut(s)	146, 167, 355, 429, 590, 959, 1013, 1129
Hpy8I	GTNNAC	6 cut(s)	589, 841, 859, 913, 1024, 1138
HpyAV	CCTTC	7 cut(s)	239, 309, 362, 761, 800, 1027, 1051
HpyCH4III	ACNGT	3 cut(s)	124, 402, 908
HpyCH4IV	ACGT	2 cut(s)	798, 1182
HpyF3I	CTNAG	3 cut(s)	276, 303, 675
HpySE526I	ACGT	2 cut(s)	798, 1182
Kpn2I	TCCGGA	1 cut(s)	1012
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	2 cut(s)	268, 955
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	235
LweI	GCATC	4 cut(s)	172, 250, 625, 802
MaeI	CTAG	3 cut(s)	239, 336, 885
MaeII	ACGT	2 cut(s)	798, 1182
MalI	GATC	2 cut(s)	270, 957
MboI	GATC	2 cut(s)	268, 955
MboII	GAAGA	6 cut(s)	149, 625, 692, 758, 988, 997
MluCI	AATT	4 cut(s)	69, 82, 386, 395
MlyI	GAGTC	3 cut(s)	422, 842, 940
Mph1103I	ATGCAT	2 cut(s)	165, 1085
MroI	TCCGGA	1 cut(s)	1012
MroXI	GAANNNNTTC	3 cut(s)	141, 899, 1004
MseI	TTAA	2 cut(s)	36, 1173
MslI	CAYNNNNRTG	3 cut(s)	158, 717, 788
MspI	CCGG	2 cut(s)	687, 1013
MspR9I	CCNGG	3 cut(s)	624, 688, 1112
MvaI	CCWGG	2 cut(s)	624, 1112
NciI	CCSGG	1 cut(s)	688
NcoI	CCATGG	2 cut(s)	651, 789
NdeII	GATC	2 cut(s)	268, 955
NheI	GCTAGC	1 cut(s)	238
NlaIV	GGNNCC	3 cut(s)	294, 1038, 1094
NsiI	ATGCAT	2 cut(s)	165, 1085
NspI	RCATGY	3 cut(s)	105, 197, 716
PagI	TCATGA	1 cut(s)	958
PciI	ACATGT	2 cut(s)	101, 193
PciSI	GCTCTTC	1 cut(s)	132
PdmI	GAANNNNTTC	3 cut(s)	141, 899, 1004
PfeI	GAWTC	3 cut(s)	76, 593, 664
PleI	GAGTC	3 cut(s)	421, 842, 940
PpsI	GAGTC	3 cut(s)	421, 842, 940
PscI	ACATGT	2 cut(s)	101, 193
Psp6I	CCWGG	2 cut(s)	622, 1110
PspGI	CCWGG	2 cut(s)	622, 1110
PspN4I	GGNNCC	3 cut(s)	294, 1038, 1094
PspPI	GGNCC	3 cut(s)	1015, 1036, 1103
RsaI	GTAC	4 cut(s)	106, 203, 878, 938
RsaNI	GTAC	4 cut(s)	105, 202, 877, 937
RseI	CAYNNNNRTG	3 cut(s)	158, 717, 788
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	36, 1173
Sau3AI	GATC	2 cut(s)	268, 955
Sau96I	GGNCC	3 cut(s)	1015, 1036, 1103
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	3 cut(s)	422, 842, 940
ScrFI	CCNGG	3 cut(s)	624, 688, 1112
SfaNI	GCATC	4 cut(s)	172, 250, 625, 802
SinI	GGWCC	1 cut(s)	1015
SmiMI	CAYNNNNRTG	3 cut(s)	158, 717, 788
Sse9I	AATT	4 cut(s)	69, 82, 386, 395
SsiI	CCGC	2 cut(s)	242, 314
SspI	AATATT	1 cut(s)	899
SspMI	CTAG	3 cut(s)	239, 336, 885
StyD4I	CCNGG	3 cut(s)	622, 686, 1110
StyI	CCWWGG	4 cut(s)	438, 492, 651, 789
TaaI	ACNGT	3 cut(s)	124, 402, 908
TaiI	ACGT	2 cut(s)	801, 1185
TaqI	TCGA	3 cut(s)	145, 271, 411
TasI	AATT	4 cut(s)	69, 82, 386, 395
TatI	WGTACW	3 cut(s)	104, 201, 936
TfiI	GAWTC	3 cut(s)	76, 593, 664
Tru1I	TTAA	2 cut(s)	36, 1173
Tru9I	TTAA	2 cut(s)	36, 1173
TscAI	CASTG	2 cut(s)	50, 1078
TspDTI	ATGAA	3 cut(s)	656, 735, 939
TspRI	CASTG	2 cut(s)	50, 1078
VpaK11BI	GGWCC	1 cut(s)	1015
XceI	RCATGY	3 cut(s)	105, 197, 716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	796
XmiI	GTMKAC	1 cut(s)	858
XmnI	GAANNNNTTC	3 cut(s)	141, 899, 1004
XspI	CTAG	3 cut(s)	239, 336, 885
ZrmI	AGTACT	1 cut(s)	203
Zsp2I	ATGCAT	2 cut(s)	165, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.