Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008048.1

Orthogroup ID

OG0003428

Physical Location & Seq

Genomic Coordinates Forward (+)

22771 .. 23989

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008048.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggtgaagcatttcttgatatgtgccatttggcagtcacttttggtggtttgcaattgggagctatcagaagctcggaaaaaggatgctttggatcaagctagggttcgttgggaggaacctcctgccaagttacttgctgaacaaagaggcttatattctagcattgaagcagacttcaagtatctcttggaagagaagaattatagtcagttggaggcattacatgctgaaattgagtcacagatgcgttctggtacagccaaggttgttgcgtattgggaggctgttcttagacgcctccatgtattcaaggccaaggcctgtttgaaagaaatccatgctaaaatgttgcacaagcgtctgcaacaccttgaggggcgagaggatggtgaagagaaattggatatgcccgatgatttacaacctgaagaggagagtgagcctgatgctaatgctccaccaccagaagataagtttgagatgaaggctgccatgaaagccatgggtgccatccaaggagaagagcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CactinC_cactus Cactin_mid

Protein Analysis

177

Amino Acids

20.42

Weight (kDa)

5.25

Isoelectric Point (pI)

68.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03910 AT1G03910 AT2G36815 AT2G36815
fragaria_vesca	FvH4_6g17312 FvH4_6g17312 FvH4_6g17312 FvH4_6g17312 FvH4_6g17312
malus_domestica	MD12G1102100.v1.1 MD14G1096200.v1.1
prunus_persica	Prupe.7G122300_v2.0.a1
pyrus_communis	pycom14g09420
rosa_chinensis	RchiOBHm_Chr3g0471451 RchiOBHm_Chr3g0471601
rosa_laevigata	RLG00000024153 RLG00000024161 RLG00000024177
rosa_multiflora	Rmu_sc0006582.1_g000009 Rmu_sc0008048.1_g000005 Rmu_sc0037090.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409750 Rroxscaffold_6G00409940
rosa_rugosa	Rorug03G0117800 Rorug03G0118500
rosa_samantha	Rh3AG167700 Rh3AG169100 Rh3AG169200 Rh3BG193200 Rh3BG194800 Rh3CG183600 Rh3CG185500 Rh3DG180000 Rh3DG182300
rosa_wichuraiana	Rw3G015800 Rw3G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AclWI	GGATC	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	450
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	170, 181, 313, 331
AluBI	AGCT	3 cut(s)	64, 74, 101
AluI	AGCT	3 cut(s)	64, 74, 101
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	2 cut(s)	315, 321
ApeKI	GCWGC	1 cut(s)	491
Asp700I	GAANNNNTTC	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	16, 404
BanI	GGYRCC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	2 cut(s)	383, 521
BfaI	CTAG	2 cut(s)	102, 162
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
BmiI	GGNNCC	2 cut(s)	120, 511
BmsI	GCATC	3 cut(s)	76, 237, 439
BpuEI	CTTGAG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	298
BsaJI	CCNNGG	4 cut(s)	264, 318, 504, 517
BseDI	CCNNGG	4 cut(s)	264, 318, 504, 517
BseGI	GGATG	3 cut(s)	91, 394, 513
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	1 cut(s)	478
BshFI	GGCC	2 cut(s)	317, 323
BshNI	GGYRCC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	317, 323
Bsp143I	GATC	1 cut(s)	94
Bsp19I	CCATGG	1 cut(s)	504
BspANI	GGCC	2 cut(s)	317, 323
BspLI	GGNNCC	2 cut(s)	120, 511
BspPI	GGATC	1 cut(s)	102
BspQI	GCTCTTC	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	509
BssECI	CCNNGG	4 cut(s)	264, 318, 504, 517
BssMI	GATC	1 cut(s)	94
BssNI	GRCGYC	1 cut(s)	298
BssT1I	CCWWGG	4 cut(s)	264, 318, 504, 517
Bst6I	CTCTTC	4 cut(s)	189, 390, 426, 519
BstACI	GRCGYC	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	293
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	3 cut(s)	91, 394, 513
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 500, 509
BstNSI	RCATGY	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	317, 323
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	3 cut(s)	91, 394, 513
CseI	GACGC	2 cut(s)	306, 350
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	5 cut(s)	227, 305, 341, 496, 505
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	4 cut(s)	189, 390, 426, 519
EarI	CTCTTC	4 cut(s)	189, 390, 426, 519
Eco130I	CCWWGG	4 cut(s)	264, 318, 504, 517
Eco147I	AGGCCT	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	450
EcoT14I	CCWWGG	4 cut(s)	264, 318, 504, 517
ErhI	CCWWGG	4 cut(s)	264, 318, 504, 517
FaeI	CATG	5 cut(s)	230, 308, 344, 499, 508
FaiI	YATR	9 cut(s)	22, 157, 207, 228, 306, 342, 410, 497, 506
FalI	AAGNNNNNCTT	3 cut(s)	31, 173, 205
FatI	CATG	5 cut(s)	226, 304, 340, 495, 504
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	3 cut(s)	98, 401, 500
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	2 cut(s)	102, 162
GluI	GCNGC	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	317, 323
HgaI	GACGC	2 cut(s)	306, 350
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	5 cut(s)	230, 308, 344, 499, 508
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	2 cut(s)	16, 404
Hpy188I	TCNGA	2 cut(s)	70, 78
Hpy188III	TCNNGA	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	481
HpyCH4V	TGCA	3 cut(s)	54, 355, 367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 500, 509
HpyF3I	CTNAG	1 cut(s)	293
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	5 cut(s)	230, 308, 344, 499, 508
Kzo9I	GATC	1 cut(s)	94
LguI	GCTCTTC	1 cut(s)	519
LmnI	GCTCC	2 cut(s)	61, 463
LpnPI	CCDG	6 cut(s)	138, 240, 337, 441, 459, 480
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	3 cut(s)	76, 237, 439
MaeI	CTAG	2 cut(s)	102, 162
MaeIII	GTNAC	3 cut(s)	36, 132, 240
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	5 cut(s)	206, 211, 407, 443, 482
MfeI	CAATTG	1 cut(s)	55
MluCI	AATT	4 cut(s)	55, 202, 234, 401
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	9 cut(s)	109, 132, 143, 211, 277, 311, 370, 379, 427
MroXI	GAANNNNTTC	1 cut(s)	11
MunI	CAATTG	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	227, 500, 509
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	5 cut(s)	230, 308, 344, 499, 508
NlaIV	GGNNCC	2 cut(s)	120, 511
NmuCI	GTSAC	2 cut(s)	36, 240
NspI	RCATGY	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	519
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	493
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	120, 511
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	519
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	248
SetI	ASST	7 cut(s)	66, 76, 103, 124, 270, 375, 430
SfaNI	GCATC	3 cut(s)	76, 237, 439
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	4 cut(s)	55, 202, 234, 401
SseBI	AGGCCT	1 cut(s)	323
SspMI	CTAG	2 cut(s)	102, 162
StuI	AGGCCT	1 cut(s)	323
StyI	CCWWGG	4 cut(s)	264, 318, 504, 517
TasI	AATT	4 cut(s)	55, 202, 234, 401
TseFI	GTSAC	2 cut(s)	36, 240
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	2 cut(s)	36, 240
TspDTI	ATGAA	2 cut(s)	500, 512
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	2 cut(s)	102, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.