Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037090.1

Orthogroup ID

OG0003428

Physical Location & Seq

Genomic Coordinates Forward (+)

300 .. 800

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037090.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgggacgcagcagcaggagtaggaaggaggcctcatccggtcgacgcagacgaaagtccgacgactccgactccgattcgtacaccgaatccgacgattccgacagcctcgactcctctccggcgaggagttccggcaagcgcaaggagcgaagcagtcgcagcagaaagagcagcagccgccgccggaaccactctgacgacgagtcgtatgaaagcgacgacagcgacgagccggaccgcaagaagaagaggtcgtcgaggaacgtcaccgaggagcaaatcgccgagtacttggctaagaaggcacagaaaaaggccgctcgagtagctaagaagctgaaatcgaagacggtttcgggttattccaatgattcgaatccctttggtgattccaatctcaatgagacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CactinC_cactus Cactin_mid

Protein Analysis

137

Amino Acids

15.46

Weight (kDa)

9.81

Isoelectric Point (pI)

101.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03910 AT1G03910 AT2G36815 AT2G36815
fragaria_vesca	FvH4_6g17312 FvH4_6g17312 FvH4_6g17312 FvH4_6g17312 FvH4_6g17312
malus_domestica	MD12G1102100.v1.1 MD14G1096200.v1.1
prunus_persica	Prupe.7G122300_v2.0.a1
pyrus_communis	pycom14g09420
rosa_chinensis	RchiOBHm_Chr3g0471451 RchiOBHm_Chr3g0471601
rosa_laevigata	RLG00000024153 RLG00000024161 RLG00000024177
rosa_multiflora	Rmu_sc0006582.1_g000009 Rmu_sc0008048.1_g000005 Rmu_sc0037090.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409750 Rroxscaffold_6G00409940
rosa_rugosa	Rorug03G0117800 Rorug03G0118500
rosa_samantha	Rh3AG167700 Rh3AG169100 Rh3AG169200 Rh3BG193200 Rh3BG194800 Rh3CG183600 Rh3CG185500 Rh3DG180000 Rh3DG182300
rosa_wichuraiana	Rw3G015800 Rw3G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	43
AciI	CCGC	4 cut(s)	181, 184, 241, 321
AfaI	GTAC	2 cut(s)	83, 293
AhdI	GACNNNNNGTC	1 cut(s)	205
AluBI	AGCT	2 cut(s)	332, 340
AluI	AGCT	2 cut(s)	332, 340
Alw26I	GTCTC	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	2 cut(s)	30, 318
ApeKI	GCWGC	5 cut(s)	9, 12, 162, 174, 177
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	262, 401
AsuII	TTCGAA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	356
BbvI	GCAGC	5 cut(s)	21, 24, 174, 186, 189
BcoDI	GTCTC	1 cut(s)	401
BisI	GCNGC	8 cut(s)	10, 13, 163, 175, 178, 181, 184, 321
BlsI	GCNGC	8 cut(s)	11, 14, 164, 176, 179, 182, 185, 322
BmcAI	AGTACT	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	238
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	191
BoxI	GACNNNNGTC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	356
Bpu14I	TTCGAA	1 cut(s)	377
BsaBI	GATNNNNATC	2 cut(s)	378, 396
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse8I	GATNNNNATC	2 cut(s)	378, 396
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	35
BseJI	GATNNNNATC	2 cut(s)	378, 396
BseRI	GAGGAG	3 cut(s)	106, 142, 290
BseXI	GCAGC	5 cut(s)	21, 24, 174, 186, 189
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	32, 320
BsiEI	CGRYCG	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	5 cut(s)	39, 122, 135, 187, 236
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	401
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	32, 320
BsoBI	CYCGRG	1 cut(s)	324
Bsp119I	TTCGAA	1 cut(s)	377
BspACI	CCGC	4 cut(s)	181, 184, 241, 321
BspANI	GGCC	2 cut(s)	32, 320
BspLI	GGNNCC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	377
BsrBI	CCGCTC	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	300, 333
BstF5I	GGATG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	401
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	8 cut(s)	148, 162, 171, 180, 183, 225, 305, 329
BstPAI	GACNNNNGTC	1 cut(s)	55
BstV1I	GCAGC	5 cut(s)	21, 24, 174, 186, 189
BstV2I	GAAGAC	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	32, 320
BtsCI	GGATG	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	140
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	238
CpoI	CGGWCCG	1 cut(s)	238
CseI	GACGC	2 cut(s)	15, 54
Csp6I	GTAC	2 cut(s)	82, 292
CspI	CGGWCCG	1 cut(s)	238
CviJI	RGCY	8 cut(s)	32, 108, 180, 235, 299, 320, 332, 340
CviKI_1	RGCY	8 cut(s)	32, 108, 180, 235, 299, 320, 332, 340
CviQI	GTAC	2 cut(s)	82, 292
DdeI	CTNAG	2 cut(s)	300, 333
DriI	GACNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	245
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	245
Eco147I	AGGCCT	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	401
FaiI	YATR	1 cut(s)	213
FaqI	GGGAC	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	8 cut(s)	10, 13, 163, 175, 178, 181, 184, 321
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	8 cut(s)	10, 13, 163, 175, 178, 181, 184, 321
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	8 cut(s)	10, 13, 163, 175, 178, 181, 184, 321
HaeIII	GGCC	2 cut(s)	32, 320
HapII	CCGG	5 cut(s)	39, 122, 135, 187, 236
HgaI	GACGC	2 cut(s)	15, 54
HhaI	GCGC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HpaII	CCGG	5 cut(s)	39, 122, 135, 187, 236
HphI	GGTGA	2 cut(s)	262, 401
Hpy166II	GTNNAC	2 cut(s)	44, 84
Hpy188I	TCNGA	6 cut(s)	61, 70, 76, 94, 103, 199
Hpy8I	GTNNAC	2 cut(s)	44, 84
Hpy99I	CGWCG	7 cut(s)	48, 65, 98, 206, 224, 233, 262
HpyAV	CCTTC	2 cut(s)	19, 298
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	2 cut(s)	267, 410
HpyF10VI	GCNNNNNNNGC	8 cut(s)	148, 162, 171, 180, 183, 225, 305, 329
HpyF3I	CTNAG	2 cut(s)	300, 333
HpySE526I	ACGT	2 cut(s)	267, 410
HspAI	GCGC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	148, 277
LpnPI	CCDG	5 cut(s)	52, 135, 148, 200, 249
Lsp1109I	GCAGC	5 cut(s)	21, 24, 174, 186, 189
MaeII	ACGT	2 cut(s)	267, 410
MaeIII	GTNAC	1 cut(s)	268
MbiI	CCGCTC	1 cut(s)	323
MboII	GAAGA	3 cut(s)	259, 262, 361
MlyI	GAGTC	4 cut(s)	59, 65, 107, 215
MmeI	TCCRAC	4 cut(s)	84, 93, 117, 126
MnlI	CCTC	8 cut(s)	22, 43, 119, 120, 127, 246, 255, 268
MspI	CCGG	5 cut(s)	39, 122, 135, 187, 236
MwoI	GCNNNNNNNGC	8 cut(s)	148, 162, 171, 180, 183, 225, 305, 329
NlaIV	GGNNCC	1 cut(s)	191
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	49, 228
PfeI	GAWTC	6 cut(s)	77, 89, 98, 374, 379, 392
PkrI	GCNGC	8 cut(s)	11, 14, 164, 176, 179, 182, 185, 322
PleI	GAGTC	4 cut(s)	59, 65, 107, 214
PpsI	GAGTC	4 cut(s)	59, 65, 107, 214
PshAI	GACNNNNGTC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	324
RsaI	GTAC	2 cut(s)	83, 293
RsaNI	GTAC	2 cut(s)	82, 292
Rsr2I	CGGWCCG	1 cut(s)	238
RsrII	CGGWCCG	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	42
SatI	GCNGC	8 cut(s)	10, 13, 163, 175, 178, 181, 184, 321
Sau96I	GGNCC	1 cut(s)	238
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	4 cut(s)	59, 65, 107, 215
SetI	ASST	5 cut(s)	257, 270, 334, 342, 413
Sfr274I	CTCGAG	1 cut(s)	324
SfuI	TTCGAA	1 cut(s)	377
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	4 cut(s)	181, 184, 241, 321
StuI	AGGCCT	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	2 cut(s)	270, 413
TaqI	TCGA	6 cut(s)	43, 111, 260, 325, 347, 377
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	3 cut(s)	183, 186, 323
TfiI	GAWTC	6 cut(s)	77, 89, 98, 374, 379, 392
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	5 cut(s)	9, 12, 162, 174, 177
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	43
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.