Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003428

Physical Location & Seq

Genomic Coordinates Forward (+)

16343487 .. 16350442

Gene Structure 6956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGCCGTGTCTAAAACCCGACCCGAACTCCAAGCTTCTAATATCGATTCGTTACAAACCCGAGTCTCACCGCCAAAGCATGGGACGCAGCAGCAGGAGTAGGAAGGAGGCCTCATCCGGTCGACGCAGACGAAAGTCCGACGACTCCGACTCCGATTCGTACACCGACTCCGACGATTCCGAAAGCCTCGACTCCTCTCCGGCGAGGAGTTCCGGCAAGCGCAAGGAGCGAAGCAGTCGCAGCAGAAAGAGCAGCAGCCGCCGCCGGAACCACTCCGACGACGAGTCGTATGAGAGCGACGACAGCGACGAGCAGGACCGCAAGAAGAAGAGGTCGAGGTCGTCGAGGAACGTCACCGAGGAGCAAATCGCCGAGTACTTGGCTAAGAAGGCACAGAAAAAGGCCGCTCGAGTAGCTAAGAAGCTGAAATCGAAGACGGTTTCGGGTTATTCCAATGATTCGAATCCCTTTGGTGATTCCAATCTCAATGAGACATTTGTATGGAGAAAGAAGATTGAGCGTGATGTCTCCCACGGCATGCCACTCGACGTGTATTCAGTTAAAGCTGAGAAGCAAAGACAGAGAGACAGGATGGCTGAGATAGAAAAGGTTAAGAAGAGAAGGGAGGAAAGAGCACTTGAAAAAGCTCAACATGAGGAAGAAATGGCGCTGCTTGCCAGAGAACGCGCTCGGGCTGAGTTCCAAGACTGGGAGAAAAAAGAAGAAGAGTTCCACTTTGATCAAAGCAAAATGAGGTCAGAGATCAGATTGCGTGAAGGGCGTATCAAGCCAATTGATGTACTTTCCAAGCATCTTGATGGCTCAGATGATTTAGATATTGAGATAAATGAGCCATACATGGTTTTCAAGGGCTTGACGGTAAAGGAAATGGAAGAGCTTCGAGATGACATTAAAATGCATCTTGATTTGGACAGGGCAACCCCTACACATATAGAATACTGGGAGGCACTTTTGGTGGTTTGCGATTGGGAGCTATCTGAAGCTCGGAAAAAGGATGCTTTGGATCGAGCTAGGGTTCGTGGGGAGGAACCTCCTGCCGAGTTACTTGCTGAACAAAGAGGCATGCATTCTAGCATTGAAGCAGATGTCAAGAATCTCTTGGAAGGGAAGACTTACAGTCAGTTGGAGGCATTACAGTCTGAAATTGAGTCACAGATGCGTTCTGGTACAGCCAAGGTCGTTGAGTATTGGGAGGCTGTTCTTACACGCCTCCATATATTCAAGGCCAAGGCCTGTTTGAAAGAAATCCATGCTAAAATGTTGCACAAGCATCTGCAACGCCTTGAGGGACGAGAGGATGGTGAAGAGAAATTGGATATGCCTGATGACTTGCAACCTGAAGAGGAGAGTGAGCCTGATGCGAATGGTGCTGAAACATATTCACCAGAACCCATAGAGGAGGAGATCCACATGGCTGAAGAAGAGGCTGAAGAGGCCGGTTCATTTTCACCTGAACTATTACATGGAGATGAAAATGAGGAAGTGATGGACCCTGAAGAGGATAGGGCTATACTGGAACGCAAGCGTATGGCCGTATTAGAAGAACAACAAAGACGAATTCAAGAGGCTATGGCATCAAAGCCAGCTCCACCATCAGAAGATAACTTTGAGATGAAGGCTGCCATGAAAGCCATGGGTGCCATGGAGGAAGGTGATGCAATATTTGGCTCTGGTTCTGAAGTGAACCTTGACTCACAGGTTTACTGGTGGCACGACAAGTACCGACCTAGAAAGCCGAAATATTTCAACCGTGTTCACACAGGATATGAATGGAATAAGTACAATCAGACCCACTATGATCACGATAACCCACCTCCAAAGATTGTGCAAGGATATAAATTCAACATCTTTTATCCAGACCTTGTTGACAAGATAAAGGCTCCAAGTTATACTATTGAGAAGGATGGAAGCAGCAGCGAGACCTGCATTATAAGGTTTCATGCAGGGCCACCTTACGAAGACATTGCATTCCGTATAGTGAACAAAGAATGGGAATACTCTCACAAGAAGGGGTTTAAATGCACATTCGAGCGTGGAATTTTGCACGTATACTTTAACTTCAAACGATACCGGTACCGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CactinC_cactus Cactin_mid

Protein Analysis

701

Amino Acids

81.94

Weight (kDa)

5.89

Isoelectric Point (pI)

72.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cactin_mid	PF10312	227 - 424	3.5e-62	Conserved mid region of cactin
CactinC_cactus	PF09732	577 - 701	6.5e-63	Cactus-binding C-terminus of cactin protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03910 AT1G03910 AT2G36815 AT2G36815
fragaria_vesca	FvH4_6g17312 FvH4_6g17312 FvH4_6g17312 FvH4_6g17312 FvH4_6g17312
malus_domestica	MD12G1102100.v1.1 MD14G1096200.v1.1
prunus_persica	Prupe.7G122300_v2.0.a1
pyrus_communis	pycom14g09420
rosa_chinensis	RchiOBHm_Chr3g0471451 RchiOBHm_Chr3g0471601
rosa_laevigata	RLG00000024153 RLG00000024161 RLG00000024177
rosa_multiflora	Rmu_sc0006582.1_g000009 Rmu_sc0008048.1_g000005 Rmu_sc0037090.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409750 Rroxscaffold_6G00409940
rosa_rugosa	Rorug03G0117800 Rorug03G0118500
rosa_samantha	Rh3AG167700 Rh3AG169100 Rh3AG169200 Rh3BG193200 Rh3BG194800 Rh3CG183600 Rh3CG185500 Rh3DG180000 Rh3DG182300
rosa_wichuraiana	Rw3G015800 Rw3G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1952
AarI	CACCTGC	1 cut(s)	2091
Acc36I	ACCTGC	2 cut(s)	1952, 2091
Acc65I	GGTACC	1 cut(s)	2094
AccB1I	GGYRCC	2 cut(s)	1658, 2094
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccBSI	CCGCTC	1 cut(s)	407
AccI	GTMKAC	2 cut(s)	121, 2070
AccII	CGCG	1 cut(s)	687
AciI	CCGC	6 cut(s)	70, 259, 262, 319, 405, 2098
AclWI	GGATC	2 cut(s)	1032, 1420
AcoI	YGGCCR	1 cut(s)	1551
AcsI	RAATTY	3 cut(s)	1578, 1859, 2058
AcuI	CTGAAG	6 cut(s)	1020, 1380, 1458, 1470, 1536, 1719
AfaI	GTAC	7 cut(s)	161, 377, 801, 1189, 1742, 1802, 2096
AfiI	CCNNNNNNNGG	3 cut(s)	79, 709, 1519
AflIII	ACRYGT	1 cut(s)	549
AgeI	ACCGGT	1 cut(s)	2091
AgsI	TTSAA	9 cut(s)	641, 868, 1100, 1243, 1261, 1583, 1768, 1864, 2083
AhdI	GACNNNNNGTC	2 cut(s)	283, 1137
AjiI	CACGTC	1 cut(s)	550
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	5 cut(s)	69, 485, 532, 579, 1934
AlwI	GGATC	2 cut(s)	1032, 1420
Ama87I	CYCGRG	3 cut(s)	59, 408, 690
AoxI	GGCC	7 cut(s)	108, 402, 1245, 1251, 1455, 1551, 1967
ApeKI	GCWGC	9 cut(s)	87, 90, 240, 252, 255, 670, 1640, 1932, 1935
ApoI	RAATTY	3 cut(s)	1578, 1859, 2058
AsiGI	ACCGGT	1 cut(s)	2091
Asp700I	GAANNNNTTC	2 cut(s)	897, 1763
Asp718I	GGTACC	1 cut(s)	2094
AspLEI	GCGC	3 cut(s)	222, 670, 689
AspS9I	GGNCC	3 cut(s)	316, 1510, 1967
AsuHPI	GGTGA	7 cut(s)	59, 346, 485, 1334, 1395, 1461, 1685
AsuII	TTCGAA	1 cut(s)	461
AvaI	CYCGRG	3 cut(s)	59, 408, 690
AvaII	GGWCC	2 cut(s)	316, 1510
BanI	GGYRCC	2 cut(s)	1658, 2094
BbsI	GAAGAC	3 cut(s)	440, 1136, 1986
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	9 cut(s)	99, 102, 252, 264, 267, 657, 1627, 1944, 1947
BccI	CCATC	6 cut(s)	586, 812, 1313, 1501, 1621, 1919
BceAI	ACGGC	2 cut(s)	550, 1538
BcgI	CGANNNNNNTGC	6 cut(s)	526, 560, 1049, 1083, 1967, 2001
BclI	TGATCA	2 cut(s)	739, 1819
BcoDI	GTCTC	5 cut(s)	69, 485, 532, 579, 1934
BfaI	CTAG	3 cut(s)	1032, 1092, 1749
BfoI	RGCGCY	1 cut(s)	671
BfuAI	ACCTGC	2 cut(s)	1952, 2091
BmcAI	AGTACT	1 cut(s)	377
Bme18I	GGWCC	2 cut(s)	316, 1510
BmeRI	GACNNNNNGTC	2 cut(s)	283, 1137
BmeT110I	CYCGRG	3 cut(s)	59, 408, 690
BmgBI	CACGTC	1 cut(s)	550
BmgT120I	GGNCC	3 cut(s)	316, 1510, 1967
BmiI	GGNNCC	6 cut(s)	269, 1050, 1512, 1660, 1902, 2096
BmrI	ACTGGG	2 cut(s)	718, 970
BmsI	GCATC	8 cut(s)	820, 928, 1006, 1167, 1300, 1369, 1604, 1666
BmuI	ACTGGG	2 cut(s)	718, 970
BoxI	GACNNNNGTC	1 cut(s)	133
BpiI	GAAGAC	3 cut(s)	440, 1136, 1986
Bpu14I	TTCGAA	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	1325
Bsa29I	ATCGAT	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	2068
BsaBI	GATNNNNATC	2 cut(s)	462, 480
BsaI	GGTCTC	1 cut(s)	1934
BsaJI	CCNNGG	6 cut(s)	357, 532, 1194, 1248, 1653, 1662
BsaWI	WCCGGW	2 cut(s)	116, 2091
BsaXI	ACNNNNNCTCC	6 cut(s)	11, 41, 134, 152, 164, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 709, 1519
Bse118I	RCCGGY	2 cut(s)	1457, 2091
Bse1I	ACTGG	4 cut(s)	713, 965, 1539, 1730
Bse3DI	GCAATG	1 cut(s)	1983
Bse8I	GATNNNNATC	2 cut(s)	462, 480
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	6 cut(s)	357, 532, 1194, 1248, 1653, 1662
BseGI	GGATG	5 cut(s)	113, 597, 1021, 1324, 1930
BseJI	GATNNNNATC	2 cut(s)	462, 480
BseLI	CCNNNNNNNGG	3 cut(s)	79, 709, 1519
BseMI	GCAATG	1 cut(s)	1983
BseMII	CTCAG	4 cut(s)	558, 588, 687, 837
BseNI	ACTGG	4 cut(s)	713, 965, 1539, 1730
BseRI	GAGGAG	6 cut(s)	184, 220, 374, 1379, 1433, 1436
BseXI	GCAGC	9 cut(s)	99, 102, 252, 264, 267, 657, 1627, 1944, 1947
Bsh1236I	CGCG	1 cut(s)	687
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	7 cut(s)	110, 404, 1247, 1253, 1457, 1553, 1969
BshNI	GGYRCC	2 cut(s)	1658, 2094
BshTI	ACCGGT	1 cut(s)	2091
BshVI	ATCGAT	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	637
BsiHKCI	CYCGRG	3 cut(s)	59, 408, 690
BsiSI	CCGG	6 cut(s)	117, 200, 213, 265, 1458, 2092
BslFI	GGGAC	2 cut(s)	96, 1323
BslI	CCNNNNNNNGG	3 cut(s)	79, 709, 1519
BsmAI	GTCTC	5 cut(s)	69, 485, 532, 579, 1934
BsmFI	GGGAC	2 cut(s)	96, 1323
BsmI	GAATGC	2 cut(s)	1087, 1988
BsnI	GGCC	7 cut(s)	110, 404, 1247, 1253, 1457, 1553, 1969
Bso31I	GGTCTC	1 cut(s)	1934
BsoBI	CYCGRG	3 cut(s)	59, 408, 690
Bsp119I	TTCGAA	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	5 cut(s)	739, 762, 1024, 1425, 1819
Bsp19I	CCATGG	2 cut(s)	1653, 1662
BspACI	CCGC	6 cut(s)	70, 259, 262, 319, 405, 2098
BspANI	GGCC	7 cut(s)	110, 404, 1247, 1253, 1457, 1553, 1969
BspCNI	CTCAG	4 cut(s)	559, 589, 688, 836
BspDI	ATCGAT	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	687
BspLI	GGNNCC	6 cut(s)	269, 1050, 1512, 1660, 1902, 2096
BspMI	ACCTGC	2 cut(s)	1952, 2091
BspPI	GGATC	2 cut(s)	1032, 1420
BspQI	GCTCTTC	1 cut(s)	888
BspT104I	TTCGAA	1 cut(s)	461
BspT107I	GGYRCC	2 cut(s)	1658, 2094
BspTNI	GGTCTC	1 cut(s)	1934
BsrBI	CCGCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	1983
BsrFI	RCCGGY	2 cut(s)	1457, 2091
BsrI	ACTGG	4 cut(s)	713, 965, 1539, 1730
BssAI	RCCGGY	2 cut(s)	1457, 2091
BssECI	CCNNGG	6 cut(s)	357, 532, 1194, 1248, 1653, 1662
BssMI	GATC	5 cut(s)	739, 762, 1024, 1425, 1819
BssNAI	GTATAC	1 cut(s)	2071
BssT1I	CCWWGG	4 cut(s)	1194, 1248, 1653, 1662
Bst1107I	GTATAC	1 cut(s)	2071
Bst4CI	ACNGT	5 cut(s)	439, 880, 1139, 1158, 1772
Bst6I	CTCTTC	9 cut(s)	323, 611, 720, 888, 1320, 1356, 1437, 1446, 1512
BstBAI	YACGTR	1 cut(s)	2068
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	6 cut(s)	218, 539, 675, 1085, 1544, 1605
BstDEI	CTNAG	6 cut(s)	384, 417, 567, 597, 696, 823
BstDSI	CCRYGG	3 cut(s)	532, 1653, 1662
BstF5I	GGATG	5 cut(s)	113, 597, 1021, 1324, 1930
BstFNI	CGCG	1 cut(s)	687
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	3 cut(s)	222, 670, 689
BstKTI	GATC	5 cut(s)	742, 765, 1027, 1428, 1822
BstMAI	GTCTC	5 cut(s)	69, 485, 532, 579, 1934
BstMBI	GATC	5 cut(s)	739, 762, 1024, 1425, 1819
BstMCI	CGRYCG	1 cut(s)	121
BstNSI	RCATGY	2 cut(s)	541, 1087
BstPAI	GACNNNNGTC	1 cut(s)	133
BstUI	CGCG	1 cut(s)	687
BstV1I	GCAGC	9 cut(s)	99, 102, 252, 264, 267, 657, 1627, 1944, 1947
BstV2I	GAAGAC	3 cut(s)	440, 1136, 1986
BstX2I	RGATCY	1 cut(s)	1425
BstYI	RGATCY	1 cut(s)	1425
BstZ17I	GTATAC	1 cut(s)	2071
Bsu15I	ATCGAT	1 cut(s)	44
BsuRI	GGCC	7 cut(s)	110, 404, 1247, 1253, 1457, 1553, 1969
BsuTUI	ATCGAT	1 cut(s)	44
BtgI	CCRYGG	3 cut(s)	532, 1653, 1662
BtrI	CACGTC	1 cut(s)	550
BtsCI	GGATG	5 cut(s)	113, 597, 1021, 1324, 1930
BveI	ACCTGC	2 cut(s)	1952, 2091
Cac8I	GCNNGC	6 cut(s)	218, 539, 675, 1085, 1544, 1605
CfoI	GCGC	3 cut(s)	222, 670, 689
Cfr10I	RCCGGY	2 cut(s)	1457, 2091
Cfr13I	GGNCC	3 cut(s)	316, 1510, 1967
ClaI	ATCGAT	1 cut(s)	44
CseI	GACGC	2 cut(s)	93, 132
Csp6I	GTAC	7 cut(s)	160, 376, 800, 1188, 1741, 1801, 2095
CspAI	ACCGGT	1 cut(s)	2091
CviQI	GTAC	7 cut(s)	160, 376, 800, 1188, 1741, 1801, 2095
DdeI	CTNAG	6 cut(s)	384, 417, 567, 597, 696, 823
DpnI	GATC	5 cut(s)	741, 764, 1026, 1427, 1821
DpnII	GATC	5 cut(s)	739, 762, 1024, 1425, 1819
DraI	TTTAAA	1 cut(s)	2038
DriI	GACNNNNNGTC	2 cut(s)	283, 1137
EaeI	YGGCCR	1 cut(s)	1551
Eam1104I	CTCTTC	9 cut(s)	323, 611, 720, 888, 1320, 1356, 1437, 1446, 1512
Eam1105I	GACNNNNNGTC	2 cut(s)	283, 1137
EarI	CTCTTC	9 cut(s)	323, 611, 720, 888, 1320, 1356, 1437, 1446, 1512
Eco130I	CCWWGG	4 cut(s)	1194, 1248, 1653, 1662
Eco147I	AGGCCT	2 cut(s)	110, 1253
Eco31I	GGTCTC	1 cut(s)	1934
Eco47I	GGWCC	2 cut(s)	316, 1510
Eco57I	CTGAAG	6 cut(s)	1020, 1380, 1458, 1470, 1536, 1719
Eco88I	CYCGRG	3 cut(s)	59, 408, 690
EcoRI	GAATTC	1 cut(s)	1578
EcoT14I	CCWWGG	4 cut(s)	1194, 1248, 1653, 1662
EcoT22I	ATGCAT	2 cut(s)	921, 1089
ErhI	CCWWGG	4 cut(s)	1194, 1248, 1653, 1662
FalI	AAGNNNNNCTT	4 cut(s)	1103, 1135, 1692, 1724
FaqI	GGGAC	2 cut(s)	96, 1323
FbaI	TGATCA	2 cut(s)	739, 1819
FblI	GTMKAC	2 cut(s)	121, 2070
FokI	GGATG	5 cut(s)	100, 604, 1028, 1331, 1937
FspBI	CTAG	3 cut(s)	1032, 1092, 1749
GlaI	GCGC	3 cut(s)	221, 669, 688
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	7 cut(s)	110, 404, 1247, 1253, 1457, 1553, 1969
HapII	CCGG	6 cut(s)	117, 200, 213, 265, 1458, 2092
HgaI	GACGC	2 cut(s)	93, 132
HhaI	GCGC	3 cut(s)	222, 670, 689
Hin6I	GCGC	3 cut(s)	220, 668, 687
HinP1I	GCGC	3 cut(s)	220, 668, 687
HincII	GTYRAC	2 cut(s)	122, 1888
HindII	GTYRAC	2 cut(s)	122, 1888
HindIII	AAGCTT	1 cut(s)	32
HpaII	CCGG	6 cut(s)	117, 200, 213, 265, 1458, 2092
HphI	GGTGA	7 cut(s)	59, 346, 485, 1334, 1395, 1461, 1685
Hpy166II	GTNNAC	8 cut(s)	122, 162, 1705, 1723, 1777, 1888, 2002, 2071
Hpy188III	TCNNGA	7 cut(s)	815, 902, 923, 1111, 1583, 1823, 1877
Hpy8I	GTNNAC	8 cut(s)	122, 162, 1705, 1723, 1777, 1888, 2002, 2071
Hpy99I	CGWCG	9 cut(s)	126, 143, 176, 281, 284, 302, 311, 346, 551
HpyAV	CCTTC	9 cut(s)	97, 382, 615, 770, 1118, 1630, 1664, 1915, 2023
HpyCH4III	ACNGT	5 cut(s)	439, 880, 1139, 1158, 1772
HpyCH4IV	ACGT	3 cut(s)	351, 549, 2067
HpyF3I	CTNAG	6 cut(s)	384, 417, 567, 597, 696, 823
HpySE526I	ACGT	3 cut(s)	351, 549, 2067
HspAI	GCGC	3 cut(s)	220, 668, 687
KpnI	GGTACC	1 cut(s)	2098
Ksp22I	TGATCA	2 cut(s)	739, 1819
Kzo9I	GATC	5 cut(s)	739, 762, 1024, 1425, 1819
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	5 cut(s)	226, 361, 991, 1612, 1906
Lsp1109I	GCAGC	9 cut(s)	99, 102, 252, 264, 267, 657, 1627, 1944, 1947
LweI	GCATC	8 cut(s)	820, 928, 1006, 1167, 1300, 1369, 1604, 1666
MaeI	CTAG	3 cut(s)	1032, 1092, 1749
MaeII	ACGT	3 cut(s)	351, 549, 2067
MaeIII	GTNAC	4 cut(s)	50, 352, 1062, 1170
MalI	GATC	5 cut(s)	741, 764, 1026, 1427, 1821
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	5 cut(s)	739, 762, 1024, 1425, 1819
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	1 cut(s)	1425
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	6 cut(s)	792, 1164, 1331, 1578, 1859, 2058
MlyI	GAGTC	8 cut(s)	71, 137, 143, 161, 185, 293, 1178, 1706
MmeI	TCCRAC	5 cut(s)	162, 171, 195, 300, 1125
Mph1103I	ATGCAT	2 cut(s)	921, 1089
MroXI	GAANNNNTTC	2 cut(s)	897, 1763
MseI	TTAA	5 cut(s)	561, 612, 912, 2037, 2076
MslI	CAYNNNNRTG	4 cut(s)	499, 816, 914, 1488
MspI	CCGG	6 cut(s)	117, 200, 213, 265, 1458, 2092
MunI	CAATTG	1 cut(s)	792
Mva1269I	GAATGC	2 cut(s)	1087, 1988
MvnI	CGCG	1 cut(s)	687
NcoI	CCATGG	2 cut(s)	1653, 1662
NdeII	GATC	5 cut(s)	739, 762, 1024, 1425, 1819
NlaIV	GGNNCC	6 cut(s)	269, 1050, 1512, 1660, 1902, 2096
NmeAIII	GCCGAG	2 cut(s)	397, 1084
NmuCI	GTSAC	2 cut(s)	352, 1170
NsiI	ATGCAT	2 cut(s)	921, 1089
NspI	RCATGY	2 cut(s)	541, 1087
NspV	TTCGAA	1 cut(s)	461
PaeI	GCATGC	2 cut(s)	541, 1087
PaeR7I	CTCGAG	1 cut(s)	408
PaqCI	CACCTGC	1 cut(s)	2091
PceI	AGGCCT	2 cut(s)	110, 1253
PciSI	GCTCTTC	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	3 cut(s)	127, 306, 341
PctI	GAATGC	2 cut(s)	1087, 1988
PdmI	GAANNNNTTC	2 cut(s)	897, 1763
PfeI	GAWTC	7 cut(s)	46, 155, 176, 458, 463, 476, 1114
PflMI	CCANNNNNTGG	1 cut(s)	79
PinAI	ACCGGT	1 cut(s)	2091
PleI	GAGTC	8 cut(s)	70, 137, 143, 161, 185, 292, 1177, 1706
PpsI	GAGTC	8 cut(s)	70, 137, 143, 161, 185, 292, 1177, 1706
Ppu21I	YACGTR	1 cut(s)	2068
PshAI	GACNNNNGTC	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	1952
PspN4I	GGNNCC	6 cut(s)	269, 1050, 1512, 1660, 1902, 2096
PspPI	GGNCC	3 cut(s)	316, 1510, 1967
PspXI	VCTCGAGB	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	1425
RsaI	GTAC	7 cut(s)	161, 377, 801, 1189, 1742, 1802, 2096
RsaNI	GTAC	7 cut(s)	160, 376, 800, 1188, 1741, 1801, 2095
RseI	CAYNNNNRTG	4 cut(s)	499, 816, 914, 1488
SalI	GTCGAC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	5 cut(s)	561, 612, 912, 2037, 2076
Sau3AI	GATC	5 cut(s)	739, 762, 1024, 1425, 1819
Sau96I	GGNCC	3 cut(s)	316, 1510, 1967
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	8 cut(s)	71, 137, 143, 161, 185, 293, 1178, 1706
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	8 cut(s)	820, 928, 1006, 1167, 1300, 1369, 1604, 1666
Sfr274I	CTCGAG	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	461
SinI	GGWCC	2 cut(s)	316, 1510
SlaI	CTCGAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	4 cut(s)	499, 816, 914, 1488
SmlI	CTYRAG	2 cut(s)	408, 1304
SmoI	CTYRAG	2 cut(s)	408, 1304
SphI	GCATGC	2 cut(s)	541, 1087
Sse9I	AATT	6 cut(s)	792, 1164, 1331, 1578, 1859, 2058
SseBI	AGGCCT	2 cut(s)	110, 1253
SsiI	CCGC	6 cut(s)	70, 259, 262, 319, 405, 2098
SspI	AATATT	2 cut(s)	1683, 1763
SspMI	CTAG	3 cut(s)	1032, 1092, 1749
StuI	AGGCCT	2 cut(s)	110, 1253
StyI	CCWWGG	4 cut(s)	1194, 1248, 1653, 1662
TaaI	ACNGT	5 cut(s)	439, 880, 1139, 1158, 1772
TaiI	ACGT	3 cut(s)	354, 552, 2070
TasI	AATT	6 cut(s)	792, 1164, 1331, 1578, 1859, 2058
TatI	WGTACW	3 cut(s)	375, 799, 1800
TauI	GCSGC	3 cut(s)	261, 264, 407
TfiI	GAWTC	7 cut(s)	46, 155, 176, 458, 463, 476, 1114
Tru1I	TTAA	5 cut(s)	561, 612, 912, 2037, 2076
Tru9I	TTAA	5 cut(s)	561, 612, 912, 2037, 2076
TseFI	GTSAC	2 cut(s)	352, 1170
TseI	GCWGC	9 cut(s)	87, 90, 240, 252, 255, 670, 1640, 1932, 1935
Tsp45I	GTSAC	2 cut(s)	352, 1170
TspDTI	ATGAA	6 cut(s)	1452, 1506, 1649, 1661, 1803, 1949
TspGWI	ACGGA	1 cut(s)	1982
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	316, 1510
XapI	RAATTY	3 cut(s)	1578, 1859, 2058
XceI	RCATGY	2 cut(s)	541, 1087
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1651, 1660
XhoI	CTCGAG	1 cut(s)	408
XmiI	GTMKAC	2 cut(s)	121, 2070
XmnI	GAANNNNTTC	2 cut(s)	897, 1763
XspI	CTAG	3 cut(s)	1032, 1092, 1749
ZrmI	AGTACT	1 cut(s)	377
Zsp2I	ATGCAT	2 cut(s)	921, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.