RLG00000024153

Cactus-binding C-terminus of cactin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003428
Physical Location & Seq
Forward (+)
32539098 .. 32539651
554 bp
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UTR
Exon/CDS
Intron
RLM00000024153

Sequence Viewer

Length: 468 bp
ATGCTTTGGATCGAGCTAGGGTTCGTTGGGAGGAACCTCCTGCCAAGTTACTTGCTGAACAAAGAGGCTTGCATTCTAGCATTGAAGCAGACTTCAGGTATCTCTTGGAAGAGAAGAATTCAGTTGGAGGCATTACACGCTGAAATTGAGTCACAGATGCGTTCTGGTACAGCCAAGGTTGTTGGGTATTGGGAGGCTGTTCTTAGACGCCTCCATGTATTCAAGGCCAAGGCCTGTTTGAAAGAAATCCATGCTAAAATGTCGCACAAGCGTCTGCAACACCTTGAGGGGCGAGAGGATGGTGAAGAGAAATTGGATATGCCCGATGATTTACAACCTGAAGAGGAGAGTGAGCCTGATGCTACGTTAATAGGAACACAAGCGTACGGCTTTATTAGAACAACAACAACCACGAATTCAAGAAGCTATGGCATCAAATCCAGCTCCACAACCAGAAGATTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CactinC_cactus Cactin_mid

Protein Analysis

156

Amino Acids

17.66

Weight (kDa)

8.91

Isoelectric Point (pI)

77.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cactin_mid PF10312 37 - 84 1.6e-11 Conserved mid region of cactin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 17
AcsI RAATTY 2 cut(s) 117, 415
AcuI CTGAAG 2 cut(s) 78, 360
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 2 cut(s) 169, 386
AgsI TTSAA 4 cut(s) 85, 223, 241, 420
AluBI AGCT 3 cut(s) 16, 426, 444
AluI AGCT 3 cut(s) 16, 426, 444
AlwI GGATC 1 cut(s) 17
AoxI GGCC 2 cut(s) 225, 231
ApoI RAATTY 2 cut(s) 117, 415
AsuHPI GGTGA 1 cut(s) 314
BccI CCATC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 403
BfaI CTAG 2 cut(s) 17, 77
BmiI GGNNCC 1 cut(s) 35
BmsI GCATC 3 cut(s) 147, 349, 441
BpuEI CTTGAG 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 174, 228
BseDI CCNNGG 2 cut(s) 174, 228
BseGI GGATG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 359
BshFI GGCC 2 cut(s) 227, 233
BsiWI CGTACG 1 cut(s) 384
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 2 cut(s) 227, 233
Bsp143I GATC 1 cut(s) 9
BspANI GGCC 2 cut(s) 227, 233
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 174, 228
BssMI GATC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 208
BssT1I CCWWGG 2 cut(s) 174, 228
Bst6I CTCTTC 3 cut(s) 104, 300, 336
BstACI GRCGYC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 137
BsuRI GGCC 2 cut(s) 227, 233
BtsCI GGATG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 70
CseI GACGC 2 cut(s) 216, 260
Csp6I GTAC 2 cut(s) 168, 385
CviAII CATG 2 cut(s) 215, 251
CviQI GTAC 2 cut(s) 168, 385
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eam1104I CTCTTC 3 cut(s) 104, 300, 336
EarI CTCTTC 3 cut(s) 104, 300, 336
Eco130I CCWWGG 2 cut(s) 174, 228
Eco147I AGGCCT 1 cut(s) 233
Eco57I CTGAAG 2 cut(s) 78, 360
EcoRI GAATTC 2 cut(s) 117, 415
EcoT14I CCWWGG 2 cut(s) 174, 228
ErhI CCWWGG 2 cut(s) 174, 228
FaeI CATG 2 cut(s) 218, 254
FaiI YATR 4 cut(s) 216, 252, 320, 429
FatI CATG 2 cut(s) 214, 250
FokI GGATG 1 cut(s) 311
FspBI CTAG 2 cut(s) 17, 77
HaeIII GGCC 2 cut(s) 227, 233
HgaI GACGC 2 cut(s) 216, 260
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 2 cut(s) 218, 254
HinfI GANTC 1 cut(s) 149
HphI GGTGA 1 cut(s) 314
Hpy188III TCNNGA 1 cut(s) 420
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 2 cut(s) 72, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 365
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 2 cut(s) 218, 254
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 449
LpnPI CCDG 7 cut(s) 53, 81, 150, 247, 351, 369, 454
LweI GCATC 3 cut(s) 147, 349, 441
MaeI CTAG 2 cut(s) 17, 77
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 2 cut(s) 47, 150
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 5 cut(s) 121, 126, 317, 353, 468
MluCI AATT 4 cut(s) 117, 144, 311, 415
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 9 cut(s) 24, 47, 58, 121, 187, 221, 280, 289, 337
MseI TTAA 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 9
NlaIII CATG 2 cut(s) 218, 254
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 150
PceI AGGCCT 1 cut(s) 233
PctI GAATGC 1 cut(s) 72
Pfl23II CGTACG 1 cut(s) 384
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspLI CGTACG 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 35
RsaI GTAC 2 cut(s) 169, 386
RsaNI GTAC 2 cut(s) 168, 385
SaqAI TTAA 1 cut(s) 368
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 1 cut(s) 158
SetI ASST 9 cut(s) 18, 39, 100, 180, 285, 340, 368, 428, 446
SfaNI GCATC 3 cut(s) 147, 349, 441
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 4 cut(s) 117, 144, 311, 415
SseBI AGGCCT 1 cut(s) 233
SspMI CTAG 2 cut(s) 17, 77
StuI AGGCCT 1 cut(s) 233
StyI CCWWGG 2 cut(s) 174, 228
TaiI ACGT 1 cut(s) 368
TaqI TCGA 1 cut(s) 12
TasI AATT 4 cut(s) 117, 144, 311, 415
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TseFI GTSAC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 150
XapI RAATTY 2 cut(s) 117, 415
XspI CTAG 2 cut(s) 17, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.