Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001935

Physical Location & Seq

Genomic Coordinates Forward (+)

9569912 .. 9574197

Gene Structure 4286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0117800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACCGAAGACCACCCCATTCTCTCATGGCGCCCCATCCCAGCCCTAACCCTAACCGCCTCCCACTCTCACTCTTACTCTCACTCCCTTGACCACGACCCCCTCTGGAAGACCGCGCACCTCACTTACGGCGTCTCCACCGCCGCCGGCACTGGAATTCGCTGTAAATTCGCATGCCTCTCCGTGGCGGAGAAGCGCGAGCAACACAAGGAGTTCGCGCCTTCGGCCGCTCAGCTCCTGAAGCATCCGCTGGCCATAATCGCTTGCGTCCCCAAGGACGTCGCGCTGTTCTGCGCCGGAGCTGTTGCCGGTGCGGCGGCTAAGACTGTCACGGCGCCGCTCGACCGCATCAAGATTCTTATGCAGACTCATGGGGTGCGAGTTGGGCAAGCAAGTGCTAAGAAGGCTATTGGTTTTGTTGAGGCCGTAGCAATGATAGGGAAGGAAGAAGGGCTTAAAGGGTACTGGAAAGGCAACCTTCCTCAGGTGATACGGATTATCCCTTATAGTGCTGTTCAGCTTTTTGCTTATGAAGCTTACAAGAAATTCTTTACTGGAAAAGATGGTGAGCTCTCTCTTCTTGGAAGACTAGCAGCAGGGGCTTGTGCAGGGATGACATCCACTTTTGTCACTTATCCATTAGATGTCCTGAGGTTACGGTTAGCAGTTGAACCAGGGTGCCGAACTATGACTGAGATTGCCTTAAACATGCTAAGAGAGGAAGGATTTGCATCCTTCTATTATGGTCTTGGACCTTCTCTTATTGGAATAGCTCCATATATTGCTGTCAACTTTTGCGTTTTTGACTTTCTGCTTTGGATGACAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CactinC_cactus Cactin_mid

Protein Analysis

276

Amino Acids

29.88

Weight (kDa)

8.9

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	95 - 187	1e-25	Mitochondrial carrier protein
Mito_carr	PF00153	190 - 271	1.5e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001935)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17310 FvH4_6g17430
malus_domestica	MD01G1105400.v1.1 MD03G1086400.v1.1 MD04G1225800.v1.1 MD06G1080700.v1.1
prunus_persica	Prupe.2G210700_v2.0.a1 Prupe.2G216300_v2.0.a1 Prupe.6G344600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0362901 RchiOBHm_Chr1g0362911 RchiOBHm_Chr3g0450671 RchiOBHm_Chr3g0471441
rosa_laevigata	RLG00000024178 RLG00000025712
rosa_multiflora	Rmu_co8224930.1_g000001 Rmu_co8324923.1_g000001 Rmu_sc0000078.1_g000035 Rmu_sc0001502.1_g000007 Rmu_sc0001502.1_g000008 Rmu_sc0006582.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293660 Rroxscaffold_6G00409950 Rroxscaffold_6G00428330
rosa_rugosa	Rorug01G0302100 Rorug01G0302100 Rorug02G0629500 Rorug03G0117800
rosa_samantha	Rh1AG311400 Rh1AG311500 Rh1BG274600 Rh1CG291800 Rh1DG305300 Rh3AG030300 Rh3AG167600 Rh3BG030600 Rh3BG030700 Rh3BG193100 Rh3CG029500 Rh3CG183500 Rh3DG030200 Rh3DG030300 Rh3DG182400
rosa_wichuraiana	Rw1G027600 Rw3G002330 Rw3G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
AccB1I	GGYRCC	3 cut(s)	30, 334, 678
AccBSI	CCGCTC	2 cut(s)	230, 340
AccII	CGCG	4 cut(s)	116, 198, 218, 284
AcoI	YGGCCR	2 cut(s)	225, 252
AcsI	RAATTY	3 cut(s)	156, 167, 545
AcuI	CTGAAG	1 cut(s)	260
AcyI	GRCGYC	4 cut(s)	31, 132, 279, 335
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	184, 484
AgsI	TTSAA	1 cut(s)	671
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	6 cut(s)	235, 302, 520, 536, 571, 773
AluI	AGCT	6 cut(s)	235, 302, 520, 536, 571, 773
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	139
AlwNI	CAGNNNCTG	1 cut(s)	238
AoxI	GGCC	3 cut(s)	225, 252, 423
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	3 cut(s)	156, 167, 545
AspLEI	GCGC	7 cut(s)	33, 118, 198, 220, 286, 296, 337
AspS9I	GGNCC	1 cut(s)	752
AsuHPI	GGTGA	2 cut(s)	499, 578
AvaII	GGWCC	1 cut(s)	752
AxyI	CCTNAGG	2 cut(s)	483, 650
BalI	TGGCCA	1 cut(s)	254
BanI	GGYRCC	3 cut(s)	30, 334, 678
BanII	GRGCYC	1 cut(s)	573
BbsI	GAAGAC	3 cut(s)	15, 116, 592
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	2 cut(s)	44, 557
BceAI	ACGGC	3 cut(s)	145, 348, 410
BciT130I	CCWGG	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	590
BfoI	RGCGCY	2 cut(s)	34, 338
BglI	GCCNNNNNGGC	1 cut(s)	314
BisI	GCNGC	6 cut(s)	144, 228, 315, 318, 338, 594
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	6 cut(s)	145, 229, 316, 319, 339, 595
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	752
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	3 cut(s)	32, 336, 680
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	3 cut(s)	253, 357, 740
BpiI	GAAGAC	3 cut(s)	15, 116, 592
Bpu1102I	GCTNAGC	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	730
BsaHI	GRCGYC	4 cut(s)	31, 132, 279, 335
BsaJI	CCNNGG	3 cut(s)	183, 273, 674
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 484
Bse118I	RCCGGY	2 cut(s)	146, 308
Bse1I	ACTGG	3 cut(s)	157, 470, 559
Bse21I	CCTNAGG	2 cut(s)	483, 650
Bse3DI	GCAATG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	730
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	3 cut(s)	183, 273, 674
BseGI	GGATG	6 cut(s)	36, 244, 617, 618, 731, 825
BseJI	GATNNNNATC	1 cut(s)	730
BseLI	CCNNNNNNNGG	2 cut(s)	184, 484
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	4 cut(s)	245, 497, 641, 684
BseNI	ACTGG	3 cut(s)	157, 470, 559
BseX3I	CGGCCG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	605
BseYI	CCCAGC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	4 cut(s)	116, 198, 218, 284
Bsh1285I	CGRYCG	2 cut(s)	228, 346
BshFI	GGCC	3 cut(s)	227, 254, 425
BshNI	GGYRCC	3 cut(s)	30, 334, 678
BsiEI	CGRYCG	2 cut(s)	228, 346
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	3 cut(s)	147, 297, 309
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	184, 484
BsmAI	GTCTC	1 cut(s)	139
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	227, 254, 425
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp1720I	GCTNAGC	1 cut(s)	231
BspANI	GGCC	3 cut(s)	227, 254, 425
BspCNI	CTCAG	4 cut(s)	244, 496, 642, 685
BspFNI	CGCG	4 cut(s)	116, 198, 218, 284
BspLI	GGNNCC	3 cut(s)	32, 336, 680
BspT107I	GGYRCC	3 cut(s)	30, 334, 678
BsrBI	CCGCTC	2 cut(s)	230, 340
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	2 cut(s)	146, 308
BsrI	ACTGG	3 cut(s)	157, 470, 559
BssAI	RCCGGY	2 cut(s)	146, 308
BssECI	CCNNGG	3 cut(s)	183, 273, 674
BssNI	GRCGYC	4 cut(s)	31, 132, 279, 335
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	2 cut(s)	328, 660
Bst6I	CTCTTC	1 cut(s)	582
BstACI	GRCGYC	4 cut(s)	31, 132, 279, 335
BstC8I	GCNNGC	6 cut(s)	148, 175, 200, 252, 265, 390
BstDEI	CTNAG	7 cut(s)	231, 321, 399, 483, 650, 693, 713
BstDSI	CCRYGG	1 cut(s)	183
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	6 cut(s)	36, 244, 617, 618, 731, 825
BstFNI	CGCG	4 cut(s)	116, 198, 218, 284
BstH2I	RGCGCY	2 cut(s)	34, 338
BstHHI	GCGC	7 cut(s)	33, 118, 198, 220, 286, 296, 337
BstMAI	GTCTC	1 cut(s)	139
BstMCI	CGRYCG	2 cut(s)	228, 346
BstMWI	GCNNNNNNNGC	8 cut(s)	224, 241, 260, 314, 385, 404, 533, 599
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	2 cut(s)	177, 712
BstSCI	CCNGG	1 cut(s)	673
BstUI	CGCG	4 cut(s)	116, 198, 218, 284
BstV1I	GCAGC	1 cut(s)	605
BstV2I	GAAGAC	3 cut(s)	15, 116, 592
BstZI	CGGCCG	1 cut(s)	225
Bsu36I	CCTNAGG	2 cut(s)	483, 650
BsuRI	GGCC	3 cut(s)	227, 254, 425
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	6 cut(s)	36, 244, 617, 618, 731, 825
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	6 cut(s)	148, 175, 200, 252, 265, 390
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	7 cut(s)	33, 118, 198, 220, 286, 296, 337
Cfr10I	RCCGGY	2 cut(s)	146, 308
Cfr13I	GGNCC	1 cut(s)	752
CseI	GACGC	2 cut(s)	121, 256
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	4 cut(s)	27, 174, 371, 709
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	7 cut(s)	231, 321, 399, 483, 650, 693, 713
DinI	GGCGCC	2 cut(s)	32, 336
EaeI	YGGCCR	2 cut(s)	225, 252
EagI	CGGCCG	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	571
EclXI	CGGCCG	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	752
Eco52I	CGGCCG	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	260
Eco81I	CCTNAGG	2 cut(s)	483, 650
EcoICRI	GAGCTC	1 cut(s)	571
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoRI	GAATTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	573
EgeI	GGCGCC	2 cut(s)	32, 336
EheI	GGCGCC	2 cut(s)	32, 336
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	4 cut(s)	30, 177, 374, 712
FalI	AAGNNNNNCTT	6 cut(s)	438, 470, 462, 494, 533, 565
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	26, 173, 370, 708
Fnu4HI	GCNGC	6 cut(s)	144, 228, 315, 318, 338, 594
FokI	GGATG	5 cut(s)	23, 231, 604, 625, 718
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	6 cut(s)	144, 228, 315, 318, 338, 594
FspBI	CTAG	1 cut(s)	590
GlaI	GCGC	7 cut(s)	32, 117, 197, 219, 285, 295, 336
GluI	GCNGC	6 cut(s)	144, 228, 315, 318, 338, 594
GsaI	CCCAGC	1 cut(s)	44
HaeII	RGCGCY	2 cut(s)	34, 338
HaeIII	GGCC	3 cut(s)	227, 254, 425
HapII	CCGG	3 cut(s)	147, 297, 309
HgaI	GACGC	2 cut(s)	121, 256
HhaI	GCGC	7 cut(s)	33, 118, 198, 220, 286, 296, 337
Hin1I	GRCGYC	4 cut(s)	31, 132, 279, 335
Hin1II	CATG	4 cut(s)	30, 177, 374, 712
Hin6I	GCGC	7 cut(s)	31, 116, 196, 218, 284, 294, 335
HinP1I	GCGC	7 cut(s)	31, 116, 196, 218, 284, 294, 335
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	2 cut(s)	355, 367
HpaII	CCGG	3 cut(s)	147, 297, 309
HphI	GGTGA	2 cut(s)	499, 578
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188III	TCNNGA	4 cut(s)	106, 238, 352, 649
Hpy8I	GTNNAC	1 cut(s)	790
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	8 cut(s)	231, 397, 436, 443, 488, 716, 745, 765
HpyCH4III	ACNGT	2 cut(s)	328, 660
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	364, 608, 731
HpyF10VI	GCNNNNNNNGC	8 cut(s)	224, 241, 260, 314, 385, 404, 533, 599
HpyF3I	CTNAG	7 cut(s)	231, 321, 399, 483, 650, 693, 713
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	4 cut(s)	31, 132, 279, 335
Hsp92II	CATG	4 cut(s)	30, 177, 374, 712
HspAI	GCGC	7 cut(s)	31, 116, 196, 218, 284, 294, 335
KasI	GGCGCC	2 cut(s)	30, 334
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
LmnI	GCTCC	3 cut(s)	240, 299, 778
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	3 cut(s)	253, 357, 740
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	3 cut(s)	328, 628, 654
MbiI	CCGCTC	2 cut(s)	230, 340
MboII	GAAGA	5 cut(s)	20, 121, 458, 569, 597
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	3 cut(s)	156, 167, 545
MluNI	TGGCCA	1 cut(s)	254
Mly113I	GGCGCC	2 cut(s)	31, 335
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	8 cut(s)	70, 113, 131, 188, 415, 492, 645, 712
Mox20I	TGGCCA	1 cut(s)	254
MroNI	GCCGGC	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	2 cut(s)	456, 704
Msp20I	TGGCCA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	3 cut(s)	147, 297, 309
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MvnI	CGCG	4 cut(s)	116, 198, 218, 284
MwoI	GCNNNNNNNGC	8 cut(s)	224, 241, 260, 314, 385, 404, 533, 599
NaeI	GCCGGC	1 cut(s)	148
NarI	GGCGCC	2 cut(s)	31, 335
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	4 cut(s)	30, 177, 374, 712
NlaIV	GGNNCC	3 cut(s)	32, 336, 680
NmuCI	GTSAC	2 cut(s)	328, 628
NspI	RCATGY	2 cut(s)	177, 712
PaeI	GCATGC	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	6 cut(s)	145, 229, 316, 319, 339, 595
PleI	GAGTC	1 cut(s)	361
PluTI	GGCGCC	2 cut(s)	34, 338
PpsI	GAGTC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	673
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	3 cut(s)	32, 336, 680
PspPI	GGNCC	1 cut(s)	752
PstNI	CAGNNNCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SacI	GAGCTC	1 cut(s)	573
SaqAI	TTAA	2 cut(s)	456, 704
SatI	GCNGC	6 cut(s)	144, 228, 315, 318, 338, 594
Sau96I	GGNCC	1 cut(s)	752
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	3 cut(s)	253, 357, 740
SfoI	GGCGCC	2 cut(s)	32, 336
SinI	GGWCC	1 cut(s)	752
SphI	GCATGC	1 cut(s)	177
Sse9I	AATT	3 cut(s)	156, 167, 545
SspDI	GGCGCC	2 cut(s)	30, 334
SspMI	CTAG	1 cut(s)	590
SstI	GAGCTC	1 cut(s)	573
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	328, 660
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	342
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	156, 167, 545
TauI	GCSGC	5 cut(s)	146, 230, 317, 320, 340
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	2 cut(s)	456, 704
Tru9I	TTAA	2 cut(s)	456, 704
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	328, 628
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	2 cut(s)	328, 628
TspDTI	ATGAA	1 cut(s)	546
TspGWI	ACGGA	2 cut(s)	172, 508
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	752
XagI	CCTNNNNNAGG	1 cut(s)	482
XapI	RAATTY	3 cut(s)	156, 167, 545
XceI	RCATGY	2 cut(s)	177, 712
XspI	CTAG	1 cut(s)	590
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.