Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8324923.1

Orthogroup ID

OG0001935

Physical Location & Seq

Genomic Coordinates Reverse (-)

91 .. 657

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8324923.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ctgtttaaccaggacacatgcagtgatggatttgatggcaccaacggcattgtcaaagacttggtgtccggtagccttaaccaaataacttccttggtcctagaactactcggccaagtgcacccagtttcggatcagcacgagtcaaatggccaaaccccagcatggtttagatccgaggaccgcaaactgctacaagcaaatggaatgcctgtagacgttgtggtagctcaggatggaaccgggaacttcacaaatatcacctccgcgattttatcagtaccggattacagcttgaagcgctacgtgatttacgtcaagaaaggggtgtacaaggagtatgtggagatcaagaagaagaaatggaacataatgatgatcggagatggcatggatgctactgtaatcagtgggaatcataattatgtggatggttggaccacatttcgctctgcaacttttggtaacactctttgcatcatgttcgtcattagactcttctattttgtttccttaatgaacaaacacgggaaatttggagatctcttcaagttttgctgttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0016787 GO:0016788 GO:0030234 GO:0030312 GO:0030599 GO:0042742 GO:0043086 GO:0043207 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098542 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

188

Amino Acids

21.03

Weight (kDa)

7.06

Isoelectric Point (pI)

24.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001935)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17310 FvH4_6g17430
malus_domestica	MD01G1105400.v1.1 MD03G1086400.v1.1 MD04G1225800.v1.1 MD06G1080700.v1.1
prunus_persica	Prupe.2G210700_v2.0.a1 Prupe.2G216300_v2.0.a1 Prupe.6G344600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0362901 RchiOBHm_Chr1g0362911 RchiOBHm_Chr3g0450671 RchiOBHm_Chr3g0471441
rosa_laevigata	RLG00000024178 RLG00000025712
rosa_multiflora	Rmu_co8224930.1_g000001 Rmu_co8324923.1_g000001 Rmu_sc0000078.1_g000035 Rmu_sc0001502.1_g000007 Rmu_sc0001502.1_g000008 Rmu_sc0006582.1_g000010
rosa_roxburghii	Rroxscaffold_4G00293660 Rroxscaffold_6G00409950 Rroxscaffold_6G00428330
rosa_rugosa	Rorug01G0302100 Rorug01G0302100 Rorug02G0629500 Rorug03G0117800
rosa_samantha	Rh1AG311400 Rh1AG311500 Rh1BG274600 Rh1CG291800 Rh1DG305300 Rh3AG030300 Rh3AG167600 Rh3BG030600 Rh3BG030700 Rh3BG193100 Rh3CG029500 Rh3CG183500 Rh3DG030200 Rh3DG030300 Rh3DG182400
rosa_wichuraiana	Rw1G027600 Rw3G002330 Rw3G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	269
AciI	CCGC	2 cut(s)	184, 267
AclWI	GGATC	2 cut(s)	141, 168
AcoI	YGGCCR	2 cut(s)	112, 151
AcsI	RAATTY	1 cut(s)	533
AfaI	GTAC	2 cut(s)	282, 332
AfeI	AGCGCT	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	130, 165
AgsI	TTSAA	2 cut(s)	298, 550
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	2 cut(s)	230, 294
AluI	AGCT	2 cut(s)	230, 294
Alw21I	GWGCWC	1 cut(s)	123
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	141, 168
Aor51HI	AGCGCT	1 cut(s)	302
AoxI	GGCC	2 cut(s)	112, 151
ApaLI	GTGCAC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	3 cut(s)	97, 181, 438
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	3 cut(s)	97, 181, 438
BaeGI	GKGCMC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	5 cut(s)	20, 29, 230, 380, 425
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BciT130I	CCWGG	1 cut(s)	11
BcnI	CCSGG	1 cut(s)	244
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	304
BglII	AGATCT	1 cut(s)	541
Bme1390I	CCNGG	2 cut(s)	11, 244
Bme18I	GGWCC	3 cut(s)	97, 181, 438
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgT120I	GGNCC	3 cut(s)	97, 181, 438
BmiI	GGNNCC	2 cut(s)	40, 241
BmrFI	CCNGG	2 cut(s)	11, 244
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	385, 486
BmuI	ACTGGG	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	93, 177
BsaWI	WCCGGW	2 cut(s)	68, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 165
Bse1I	ACTGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	93, 177
BseGI	GGATG	3 cut(s)	241, 400, 436
BseLI	CCNNNNNNNGG	2 cut(s)	130, 165
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	123
BseYI	CCCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	2 cut(s)	114, 153
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	69, 243, 284
BslI	CCNNNNNNNGG	2 cut(s)	130, 165
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	114, 153
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	5 cut(s)	133, 173, 348, 378, 541
BspACI	CCGC	2 cut(s)	184, 267
BspANI	GGCC	2 cut(s)	114, 153
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	40, 241
BspPI	GGATC	2 cut(s)	141, 168
BspT107I	GGYRCC	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	93, 177
BssMI	GATC	5 cut(s)	133, 173, 348, 378, 541
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	2 cut(s)	503, 551
BstAUI	TGTACA	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	231, 564
BstF5I	GGATG	3 cut(s)	241, 400, 436
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	5 cut(s)	136, 176, 351, 381, 544
BstMBI	GATC	5 cut(s)	133, 173, 348, 378, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 300
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	21
BstSCI	CCNGG	2 cut(s)	9, 242
BstSFI	CTRYAG	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	1 cut(s)	269
BstX2I	RGATCY	2 cut(s)	173, 541
BstYI	RGATCY	2 cut(s)	173, 541
BsuRI	GGCC	2 cut(s)	114, 153
BtsCI	GGATG	3 cut(s)	241, 400, 436
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 415
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	3 cut(s)	97, 181, 438
Csp6I	GTAC	2 cut(s)	281, 331
CviAII	CATG	4 cut(s)	18, 165, 391, 481
CviJI	RGCY	5 cut(s)	75, 114, 153, 230, 294
CviKI_1	RGCY	5 cut(s)	75, 114, 153, 230, 294
CviQI	GTAC	2 cut(s)	281, 331
DdeI	CTNAG	2 cut(s)	231, 564
DpnI	GATC	5 cut(s)	135, 175, 350, 380, 543
DpnII	GATC	5 cut(s)	133, 173, 348, 378, 541
DriI	GACNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	2 cut(s)	112, 151
Eam1104I	CTCTTC	2 cut(s)	503, 551
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EarI	CTCTTC	2 cut(s)	503, 551
Eco130I	CCWWGG	1 cut(s)	93
Eco47I	GGWCC	3 cut(s)	97, 181, 438
Eco47III	AGCGCT	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	4 cut(s)	21, 168, 394, 484
FaiI	YATR	8 cut(s)	19, 166, 342, 371, 392, 420, 426, 482
FatI	CATG	4 cut(s)	17, 164, 390, 480
FblI	GTMKAC	1 cut(s)	216
FokI	GGATG	3 cut(s)	248, 407, 443
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	302
GsaI	CCCAGC	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	114, 153
HapII	CCGG	3 cut(s)	69, 243, 284
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	4 cut(s)	21, 168, 394, 484
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	143, 415, 495
HpaII	CCGG	3 cut(s)	69, 243, 284
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	3 cut(s)	121, 217, 331
Hpy188I	TCNGA	3 cut(s)	133, 178, 383
Hpy188III	TCNNGA	3 cut(s)	233, 319, 352
Hpy8I	GTNNAC	3 cut(s)	121, 217, 331
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	3 cut(s)	219, 306, 315
HpyCH4V	TGCA	4 cut(s)	21, 121, 455, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 300
HpyF3I	CTNAG	2 cut(s)	231, 564
HpySE526I	ACGT	3 cut(s)	219, 306, 315
Hsp92II	CATG	4 cut(s)	21, 168, 394, 484
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	5 cut(s)	133, 173, 348, 378, 541
LpnPI	CCDG	8 cut(s)	23, 82, 138, 174, 218, 225, 256, 297
LweI	GCATC	2 cut(s)	385, 486
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	3 cut(s)	219, 306, 315
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	5 cut(s)	135, 175, 350, 380, 543
MboI	GATC	5 cut(s)	133, 173, 348, 378, 541
MboII	GAAGA	4 cut(s)	367, 370, 490, 538
MflI	RGATCY	2 cut(s)	173, 541
MhlI	GDGCHC	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	2 cut(s)	421, 533
MluNI	TGGCCA	1 cut(s)	153
MlyI	GAGTC	2 cut(s)	152, 489
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	2 cut(s)	172, 274
Mox20I	TGGCCA	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	3 cut(s)	6, 78, 515
MslI	CAYNNNNRTG	2 cut(s)	374, 423
Msp20I	TGGCCA	1 cut(s)	153
MspI	CCGG	3 cut(s)	69, 243, 284
MspR9I	CCNGG	2 cut(s)	11, 244
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	45, 300
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	5 cut(s)	133, 173, 348, 378, 541
NlaIII	CATG	4 cut(s)	21, 168, 394, 484
NlaIV	GGNNCC	2 cut(s)	40, 241
NmeAIII	GCCGAG	1 cut(s)	90
NspI	RCATGY	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	415
PleI	GAGTC	2 cut(s)	151, 489
PpsI	GAGTC	2 cut(s)	151, 489
Ppu21I	YACGTR	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	40, 241
PspPI	GGNCC	3 cut(s)	97, 181, 438
PsuI	RGATCY	2 cut(s)	173, 541
RsaI	GTAC	2 cut(s)	282, 332
RsaNI	GTAC	2 cut(s)	281, 331
RseI	CAYNNNNRTG	2 cut(s)	374, 423
SaqAI	TTAA	3 cut(s)	6, 78, 515
Sau3AI	GATC	5 cut(s)	133, 173, 348, 378, 541
Sau96I	GGNCC	3 cut(s)	97, 181, 438
SchI	GAGTC	2 cut(s)	152, 489
ScrFI	CCNGG	2 cut(s)	11, 244
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	6 cut(s)	222, 232, 266, 296, 309, 318
SfaNI	GCATC	2 cut(s)	385, 486
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	3 cut(s)	97, 181, 438
SmiMI	CAYNNNNRTG	2 cut(s)	374, 423
Sse9I	AATT	2 cut(s)	421, 533
SsiI	CCGC	2 cut(s)	184, 267
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	9, 242
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	3 cut(s)	222, 309, 318
TasI	AATT	2 cut(s)	421, 533
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	3 cut(s)	6, 78, 515
Tru9I	TTAA	3 cut(s)	6, 78, 515
TscAI	CASTG	2 cut(s)	28, 415
TspDTI	ATGAA	1 cut(s)	533
TspRI	CASTG	2 cut(s)	28, 415
VneI	GTGCAC	1 cut(s)	119
VpaK11BI	GGWCC	3 cut(s)	97, 181, 438
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.