Rmu_sc0001502.1_g000007

pectinesterase pectinesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001502.1
OG0001935
Physical Location & Seq
Reverse (-)
27608 .. 28171
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001502.1_g000007.1.cds

Sequence Viewer

Length: 477 bp
atgcaagataagtggataccgagacacattgtatgcacacacaacagccgccagttctttagggaatgcaagatcagtggcactgtcgacttcatcttcggctacagcactgcagttttccaaatgtgcaccaatattgcgaagaaaagacctaatcatggcctgctacacccacatactcgtaattactcacgtacagttttcatgcaatcgaccctaggttgtgtagtaactcccaagggttggattgaatggaatggaaaccgtggcattgacactctgtattatggtgagttcatgaataaagggccaggttccgagctcgcagggcgggtcagatggctcggtcatcatactgatccatctgaggccgatcagtttacggccaccaactttattgacggagatttttggctgccatccataggtatcccatacacatcagaattggggagtccaatacctcaacctagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
PMEI Pectinesterase

Protein Analysis

158

Amino Acids

17.97

Weight (kDa)

8.4

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AccI GTMKAC 1 cut(s) 87
AciI CCGC 2 cut(s) 49, 331
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 384
AfaI GTAC 1 cut(s) 196
AfiI CCNNNNNNNGG 3 cut(s) 158, 243, 425
AgsI TTSAA 1 cut(s) 251
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 2 cut(s) 322, 474
AluI AGCT 2 cut(s) 322, 474
Alw21I GWGCWC 2 cut(s) 131, 324
Alw26I GTCTC 1 cut(s) 16
Alw44I GTGCAC 1 cut(s) 127
AlwI GGATC 1 cut(s) 353
AoxI GGCC 4 cut(s) 160, 308, 369, 384
ApaLI GTGCAC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 415
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspA2I CCTAGG 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 302
AvrII CCTAGG 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 2 cut(s) 131, 324
BbvI GCAGC 1 cut(s) 402
BccI CCATC 3 cut(s) 333, 370, 427
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 2 cut(s) 9, 440
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 2 cut(s) 218, 471
BfmI CTRYAG 2 cut(s) 103, 111
BfuI GTATCC 2 cut(s) 9, 440
BisI GCNGC 2 cut(s) 49, 416
BlnI CCTAGG 1 cut(s) 217
BlsI GCNGC 2 cut(s) 50, 417
Bme1390I CCNGG 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 217, 237, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 243, 425
Bse1I ACTGG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 217, 237, 265
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 3 cut(s) 158, 243, 425
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 1 cut(s) 402
BshFI GGCC 4 cut(s) 162, 310, 371, 386
BsiHKAI GWGCWC 2 cut(s) 131, 324
BslI CCNNNNNNNGG 3 cut(s) 158, 243, 425
BsmAI GTCTC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 4 cut(s) 162, 310, 371, 386
Bsp1286I GDGCHC 2 cut(s) 131, 324
Bsp143I GATC 3 cut(s) 72, 358, 373
BspACI CCGC 2 cut(s) 49, 331
BspANI GGCC 4 cut(s) 162, 310, 371, 386
BspCNI CTCAG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 1 cut(s) 353
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 3 cut(s) 217, 237, 265
BssMI GATC 3 cut(s) 72, 358, 373
BssT1I CCWWGG 2 cut(s) 217, 237
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 85, 199, 266
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 164, 324
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 419
BstKTI GATC 3 cut(s) 75, 361, 376
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 3 cut(s) 72, 358, 373
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 2 cut(s) 103, 111
BstSLI GKGCMC 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 402
BsuI GTATCC 2 cut(s) 9, 440
BsuRI GGCC 4 cut(s) 162, 310, 371, 386
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 1 cut(s) 419
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 3 cut(s) 81, 82, 108
Cac8I GCNNGC 2 cut(s) 164, 324
CciI TCATGA 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 195
CspCI CAANNNNNGTGG 3 cut(s) 28, 58, 93
CviAII CATG 3 cut(s) 158, 205, 298
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 1 cut(s) 366
DpnI GATC 3 cut(s) 74, 360, 375
DpnII GATC 3 cut(s) 72, 358, 373
EaeI YGGCCR 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 2 cut(s) 217, 237
Eco24I GRGCYC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 2 cut(s) 217, 237
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 2 cut(s) 217, 237
FaeI CATG 3 cut(s) 161, 208, 301
FaiI YATR 9 cut(s) 34, 159, 177, 206, 288, 299, 354, 425, 436
FatI CATG 3 cut(s) 157, 204, 297
FauI CCCGC 1 cut(s) 324
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 49, 416
FokI GGATG 1 cut(s) 406
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 49, 416
FspBI CTAG 2 cut(s) 218, 471
GluI GCNGC 2 cut(s) 49, 416
HaeIII GGCC 4 cut(s) 162, 310, 371, 386
Hin1II CATG 3 cut(s) 161, 208, 301
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 454
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 3 cut(s) 88, 129, 381
Hpy188I TCNGA 4 cut(s) 319, 338, 367, 445
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 3 cut(s) 88, 129, 381
HpyCH4III ACNGT 3 cut(s) 85, 199, 266
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 6 cut(s) 4, 36, 69, 113, 129, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 3 cut(s) 161, 208, 301
Kzo9I GATC 3 cut(s) 72, 358, 373
LpnPI CCDG 5 cut(s) 65, 176, 297, 312, 324
Lsp1109I GCAGC 1 cut(s) 402
MaeI CTAG 2 cut(s) 218, 471
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 229
MalI GATC 3 cut(s) 74, 360, 375
MboI GATC 3 cut(s) 72, 358, 373
MboII GAAGA 2 cut(s) 88, 154
MhlI GDGCHC 2 cut(s) 131, 324
MluCI AATT 2 cut(s) 184, 446
MlyI GAGTC 1 cut(s) 463
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 2 cut(s) 361, 474
MspR9I CCNGG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 328
NdeII GATC 3 cut(s) 72, 358, 373
NlaIII CATG 3 cut(s) 161, 208, 301
NlaIV GGNNCC 1 cut(s) 316
PagI TCATGA 1 cut(s) 297
PctI GAATGC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 2 cut(s) 50, 417
PleI GAGTC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 462
Ppu21I YACGTR 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 308
PstI CTGCAG 1 cut(s) 115
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
SacI GAGCTC 1 cut(s) 324
SalI GTCGAC 1 cut(s) 86
SatI GCNGC 2 cut(s) 49, 416
Sau3AI GATC 3 cut(s) 72, 358, 373
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 2 cut(s) 131, 324
SetI ASST 9 cut(s) 154, 196, 223, 316, 324, 430, 466, 472, 476
SfcI CTRYAG 2 cut(s) 103, 111
Sse9I AATT 2 cut(s) 184, 446
SsiI CCGC 2 cut(s) 49, 331
SspI AATATT 1 cut(s) 136
SspMI CTAG 2 cut(s) 218, 471
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 2 cut(s) 217, 237
TaaI ACNGT 3 cut(s) 85, 199, 266
TaiI ACGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 87, 212
TaqII GACCGA 1 cut(s) 335
TasI AATT 2 cut(s) 184, 446
TauI GCSGC 1 cut(s) 51
TscAI CASTG 3 cut(s) 82, 88, 115
TseI GCWGC 1 cut(s) 415
TspDTI ATGAA 4 cut(s) 82, 193, 286, 314
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 3 cut(s) 82, 88, 115
Van91I CCANNNNNTGG 1 cut(s) 243
VneI GTGCAC 1 cut(s) 127
XmaJI CCTAGG 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 218, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.