Rroxscaffold_6G00409750

Cactus-binding C-terminus of cactin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003428
Physical Location & Seq
Forward (+)
32243855 .. 32254346
10492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409750.1

Sequence Viewer

Length: 960 bp
ATGCAAGTCTTCAATTTGACAAAGAACGAGTCCACTTGTGGGGAAAAGGTTAAGAAGAGAAGGGAGGAAAGAGCACTTGAAAAAGCACAACGTGAGGAAGAAATGATCCGATTGCGTGAAGGGCATATTAAGCCAATTGATGTGCTTTCCAAGCATCTCGATGGCTCAGCTGATTTAGATATTGAGATAAATGAGCCATACATGGTTTTCAAGAGCTTGACAGTAAAGGAAATGGAAGAGCTTCGAGATGACATCAAAATGCATCTTGATTTGGACAGGGATACACCTACACATATAGGATACTGGGAGGCACTTTTGGTGGTTTGCAATTGGGAGCTATCAGAAGCGCGGAACAAGGATGCTTTGGATCGAGCTAGGGAACCTCCTGCCAAGTTACTTGCTGAACAAAGAGGCTTGTATTCTAGCATTGAAGCAGACTTCAAGTATCTCTTGGAAGAGAAGAATTATAGTCAGTTGGAGGCATTAAACGCTGAAATTGAATCACAGATGCGTTCTGGTACAGCCAAGGTTGTTGGGTATTGGGAGGCTGTTCTTAGATGCCTCCATGTATTCAAGGCCAAGGCCTGTTTGAAAGAAATCCATGCTAAAATGTTGCACAAGCGTCTGCAACACCTTGAGGGGCGAGATGATGGTGAAGAGAAATTGGATATGCCCGATGATTTACAACCTGAAGAGGAGAGTGAGCCTGATGCTAATGGGGCTGAAACATATACATCAGAACCCGTAGAGGAGGAGATCCACATGGCTGAAGAGGCCGCTTTATTTTCACAAGAACTATTACATGGAGATGAAAATGAGGACGTGAATGACCCTGAAGAGAATAGGCCTATACTGCCAGCTCCACCACCAGAAGATAAGTTTGAGATGAAGGCTACCATGAAAGCCATGGATGTCATCCAAGGAGAAGAGCAATTAGTATTACTGCAGCTTATCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CactinC_cactus Cactin_mid

Protein Analysis

319

Amino Acids

36.81

Weight (kDa)

4.69

Isoelectric Point (pI)

63.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cactin_mid PF10312 27 - 201 1.7e-44 Conserved mid region of cactin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 349
AciI CCGC 2 cut(s) 349, 777
AclWI GGATC 3 cut(s) 100, 375, 751
AcuI CTGAAG 3 cut(s) 711, 789, 855
AdeI CACNNNGTG 1 cut(s) 92
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 8 cut(s) 13, 80, 211, 431, 442, 500, 574, 592
AjiI CACGTC 1 cut(s) 823
AluBI AGCT 7 cut(s) 170, 216, 241, 337, 374, 860, 949
AluI AGCT 7 cut(s) 170, 216, 241, 337, 374, 860, 949
Alw21I GWGCWC 1 cut(s) 76
AlwI GGATC 3 cut(s) 100, 375, 751
AoxI GGCC 4 cut(s) 576, 582, 774, 845
ApeKI GCWGC 1 cut(s) 946
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 665
Bbv12I GWGCWC 1 cut(s) 76
BccI CCATC 2 cut(s) 155, 644
BciVI GTATCC 2 cut(s) 274, 293
BfaI CTAG 2 cut(s) 375, 423
BfmI CTRYAG 1 cut(s) 944
BfuI GTATCC 2 cut(s) 274, 293
BisI GCNGC 2 cut(s) 777, 947
BlpI GCTNAGC 1 cut(s) 166
BlsI GCNGC 2 cut(s) 778, 948
BmgBI CACGTC 1 cut(s) 823
BmiI GGNNCC 1 cut(s) 381
BmrI ACTGGG 1 cut(s) 313
BmsI GCATC 6 cut(s) 163, 271, 349, 498, 548, 700
BmuI ACTGGG 1 cut(s) 313
Bpu1102I GCTNAGC 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 656
BsaJI CCNNGG 4 cut(s) 525, 579, 906, 919
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 308
BseDI CCNNGG 4 cut(s) 525, 579, 906, 919
BseGI GGATG 3 cut(s) 364, 915, 916
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 3 cut(s) 710, 764, 767
Bsh1236I CGCG 1 cut(s) 349
BshFI GGCC 4 cut(s) 578, 584, 776, 847
BsiHKAI GWGCWC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 39
BsnI GGCC 4 cut(s) 578, 584, 776, 847
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 3 cut(s) 105, 367, 756
Bsp1720I GCTNAGC 1 cut(s) 166
Bsp19I CCATGG 1 cut(s) 906
BspACI CCGC 2 cut(s) 349, 777
BspANI GGCC 4 cut(s) 578, 584, 776, 847
BspCNI CTCAG 1 cut(s) 179
BspFNI CGCG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 381
BspMAI CTGCAG 1 cut(s) 948
BspPI GGATC 3 cut(s) 100, 375, 751
BspQI GCTCTTC 2 cut(s) 231, 921
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 4 cut(s) 525, 579, 906, 919
BssMI GATC 3 cut(s) 105, 367, 756
BssT1I CCWWGG 4 cut(s) 525, 579, 906, 919
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 8 cut(s) 50, 231, 450, 651, 687, 765, 831, 921
BstC8I GCNNGC 1 cut(s) 858
BstDEI CTNAG 2 cut(s) 166, 554
BstDSI CCRYGG 1 cut(s) 906
BstF5I GGATG 3 cut(s) 364, 915, 916
BstFNI CGCG 1 cut(s) 349
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 3 cut(s) 108, 370, 759
BstMBI GATC 3 cut(s) 105, 367, 756
BstMWI GCNNNNNNNGC 7 cut(s) 121, 130, 151, 488, 719, 773, 853
BstSFI CTRYAG 1 cut(s) 944
BstUI CGCG 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 756
BstYI RGATCY 1 cut(s) 756
BsuI GTATCC 2 cut(s) 274, 293
BsuRI GGCC 4 cut(s) 578, 584, 776, 847
BtgI CCRYGG 1 cut(s) 906
BtrI CACGTC 1 cut(s) 823
BtsCI GGATG 3 cut(s) 364, 915, 916
Cac8I GCNNGC 1 cut(s) 858
CfoI GCGC 1 cut(s) 349
CseI GACGC 1 cut(s) 611
Csp6I GTAC 1 cut(s) 519
CviAII CATG 8 cut(s) 202, 566, 602, 763, 803, 898, 907, 955
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 2 cut(s) 166, 554
DpnI GATC 3 cut(s) 107, 369, 758
DpnII GATC 3 cut(s) 105, 367, 756
DraIII CACNNNGTG 1 cut(s) 92
Eam1104I CTCTTC 8 cut(s) 50, 231, 450, 651, 687, 765, 831, 921
EarI CTCTTC 8 cut(s) 50, 231, 450, 651, 687, 765, 831, 921
Eco130I CCWWGG 4 cut(s) 525, 579, 906, 919
Eco147I AGGCCT 2 cut(s) 584, 847
Eco57I CTGAAG 3 cut(s) 711, 789, 855
EcoT14I CCWWGG 4 cut(s) 525, 579, 906, 919
EcoT22I ATGCAT 1 cut(s) 264
ErhI CCWWGG 4 cut(s) 525, 579, 906, 919
FaeI CATG 8 cut(s) 205, 569, 605, 766, 806, 901, 910, 958
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FatI CATG 8 cut(s) 201, 565, 601, 762, 802, 897, 906, 954
Fnu4HI GCNGC 2 cut(s) 777, 947
FokI GGATG 3 cut(s) 371, 902, 923
Fsp4HI GCNGC 2 cut(s) 777, 947
FspBI CTAG 2 cut(s) 375, 423
GlaI GCGC 1 cut(s) 348
GluI GCNGC 2 cut(s) 777, 947
HaeIII GGCC 4 cut(s) 578, 584, 776, 847
HgaI GACGC 1 cut(s) 611
HhaI GCGC 1 cut(s) 349
Hin1II CATG 8 cut(s) 205, 569, 605, 766, 806, 901, 910, 958
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 2 cut(s) 29, 500
HphI GGTGA 1 cut(s) 665
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 3 cut(s) 110, 343, 739
Hpy188III TCNNGA 4 cut(s) 158, 211, 245, 266
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 3 cut(s) 54, 113, 883
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 2 cut(s) 91, 822
HpyCH4V TGCA 6 cut(s) 4, 262, 327, 616, 628, 946
HpyF10VI GCNNNNNNNGC 7 cut(s) 121, 130, 151, 488, 719, 773, 853
HpyF3I CTNAG 2 cut(s) 166, 554
HpySE526I ACGT 2 cut(s) 91, 822
Hsp92II CATG 8 cut(s) 205, 569, 605, 766, 806, 901, 910, 958
HspAI GCGC 1 cut(s) 347
Kzo9I GATC 3 cut(s) 105, 367, 756
LguI GCTCTTC 2 cut(s) 231, 921
LmnI GCTCC 2 cut(s) 334, 865
LweI GCATC 6 cut(s) 163, 271, 349, 498, 548, 700
MaeI CTAG 2 cut(s) 375, 423
MaeII ACGT 2 cut(s) 91, 822
MaeIII GTNAC 1 cut(s) 393
MalI GATC 3 cut(s) 107, 369, 758
MboI GATC 3 cut(s) 105, 367, 756
MfeI CAATTG 2 cut(s) 135, 328
MflI RGATCY 1 cut(s) 756
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 7 cut(s) 13, 135, 328, 463, 495, 662, 932
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 456
Mph1103I ATGCAT 1 cut(s) 264
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 3 cut(s) 51, 129, 485
MslI CAYNNNNRTG 3 cut(s) 159, 257, 807
MspA1I CMGCKG 1 cut(s) 170
MunI CAATTG 2 cut(s) 135, 328
MvnI CGCG 1 cut(s) 349
MwoI GCNNNNNNNGC 7 cut(s) 121, 130, 151, 488, 719, 773, 853
NcoI CCATGG 1 cut(s) 906
NdeII GATC 3 cut(s) 105, 367, 756
NlaIII CATG 8 cut(s) 205, 569, 605, 766, 806, 901, 910, 958
NlaIV GGNNCC 1 cut(s) 381
NsiI ATGCAT 1 cut(s) 264
PceI AGGCCT 2 cut(s) 584, 847
PciSI GCTCTTC 2 cut(s) 231, 921
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 500
PkrI GCNGC 2 cut(s) 778, 948
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 381
PstI CTGCAG 1 cut(s) 948
PsuI RGATCY 1 cut(s) 756
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
RseI CAYNNNNRTG 3 cut(s) 159, 257, 807
SapI GCTCTTC 2 cut(s) 231, 921
SaqAI TTAA 3 cut(s) 51, 129, 485
SatI GCNGC 2 cut(s) 777, 947
Sau3AI GATC 3 cut(s) 105, 367, 756
SchI GAGTC 1 cut(s) 38
SduI GDGCHC 1 cut(s) 76
SfaNI GCATC 6 cut(s) 163, 271, 349, 498, 548, 700
SfcI CTRYAG 1 cut(s) 944
SmiMI CAYNNNNRTG 3 cut(s) 159, 257, 807
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 7 cut(s) 13, 135, 328, 463, 495, 662, 932
SseBI AGGCCT 2 cut(s) 584, 847
SsiI CCGC 2 cut(s) 349, 777
SspMI CTAG 2 cut(s) 375, 423
StuI AGGCCT 2 cut(s) 584, 847
StyI CCWWGG 4 cut(s) 525, 579, 906, 919
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 2 cut(s) 94, 825
TaqI TCGA 3 cut(s) 159, 244, 370
TasI AATT 7 cut(s) 13, 135, 328, 463, 495, 662, 932
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 3 cut(s) 51, 129, 485
Tru9I TTAA 3 cut(s) 51, 129, 485
TseI GCWGC 1 cut(s) 946
TspDTI ATGAA 3 cut(s) 825, 902, 914
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 2 cut(s) 375, 423
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.