Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Forward (+)

15549052 .. 15552160

Gene Structure 3109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37025.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGGACCTTTTGGGATGGAAACAACACCCGGTTTTCCTGATACTTTTGCTGGATTCAAATCTGCCAGTGTTGATGAGAATCTTGGCCATTCAATGGAGGATAAAATGAGTGACATGAAGCATTTCCTAATGGATCCTCATCATGATAATACCGCGGTGGACAGTTTCTTAGGTCTTGGTATGGAGAATATGGGCTTAACCTCCAAGATGGAGGAGTTTTCACATGGATTTGACGTTAGCTTTCTCCCAGATTATGGTGGAGTTAACACTTTTAGCACTCAAGATGTGGAAGCAGGTTTAAAGTTTGAAATTCTTGATGGAATTCTGGATGGAGTTGATGAAGTGGAAGATATCTACGCATCACATGAGCTTTCTTCTATTGTTAACCATTTCCCTCCAGAAACTGAAGTCAAGAAGAATGAATTAGAGGGTGACCCCTATGGTCTTATGAACTTCAGTTCAGAATCTTATTCTCCTGGAATTAGTGGAAGCATCGGACTCGCGGAGTGGTCAAAAGAAACTGTTCCATATGCTGAATCCCAGATTGTATCCAGCGAAAAAGTTAAAGATAGTTGGGATACAAATGAGTCAGAAGATGACAAGAAACCACTATCCACATTTATAGGCTCTTGGATTAAACGAAAGAATCGGAAACAGAAATTGCTCAACACCGCTTGTAGTAGATTAGATTCTTCTCGTGAAAGAAAGTCTTGCGAGTCCTATGACTTCAGGCCCCGGAAAGGACCTATGAAGAAATACATTCACACTTCAATGGAGAAAACATTTTCTGATGATCAGCTTACTTTATCTGAGAGTGAAGATGACATTTCTGTAACAAAGACATCCAGAACCAAAAGTGACAGGAGAAAGAATCAGAGGATATGGACTCTTGATGAAGTAATGAATTTGGTTGATGGTATTTCTCACTTTGGTGTTGGGAAATGGACCGATATAAAGAACCACTTCTTTCATTATGCAGCACACCGCAAACCCGTTGATATCAGAGACAAATGGCGTAATCTACTGAAAGCAAGTTATAACGAAAAGCATAACGATGGACAGGCTGAAGAAAAACGAAAGTCAGTGGCTCGCTCTATACCGAAGGATATTCTACATCGTGTAAGAGAACTTGCTTCACTCCATCCATATCCCTTCTCCAAATCACCGTGTATTGTTCATGATTCCTCAAGAAGCCGAAGCACTTCAAAGAACAAGAAGAAGAAGAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

410

Amino Acids

46.55

Weight (kDa)

6.17

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	295 - 342	4.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1038
Acc36I	ACCTGC	1 cut(s)	284
AccB7I	CCANNNNNTGG	2 cut(s)	94, 254
AccII	CGCG	2 cut(s)	155, 503
AciI	CCGC	5 cut(s)	153, 155, 503, 672, 985
AclWI	GGATC	2 cut(s)	128, 141
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	3 cut(s)	309, 321, 904
AcuI	CTGAAG	4 cut(s)	426, 439, 712, 1086
AfiI	CCNNNNNNNGG	3 cut(s)	94, 254, 740
AgsI	TTSAA	5 cut(s)	58, 93, 308, 771, 1206
AjnI	CCWGG	1 cut(s)	475
AleI	CACNNNNGTG	1 cut(s)	930
AluBI	AGCT	3 cut(s)	240, 370, 799
AluI	AGCT	3 cut(s)	240, 370, 799
Alw26I	GTCTC	1 cut(s)	999
AlwI	GGATC	2 cut(s)	128, 141
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	2 cut(s)	85, 731
ApeKI	GCWGC	1 cut(s)	977
ApoI	RAATTY	3 cut(s)	309, 321, 904
Asp700I	GAANNNNTTC	4 cut(s)	122, 522, 962, 1201
AspS9I	GGNCC	4 cut(s)	5, 732, 743, 945
AsuC2I	CCSGG	2 cut(s)	30, 736
AsuHPI	GGTGA	2 cut(s)	443, 1155
AvaII	GGWCC	3 cut(s)	5, 743, 945
BalI	TGGCCA	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	696
BbvI	GCAGC	1 cut(s)	989
BccI	CCATC	7 cut(s)	10, 202, 311, 323, 908, 1049, 1149
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	1 cut(s)	477
BciVI	GTATCC	2 cut(s)	559, 571
BclI	TGATCA	1 cut(s)	793
BcnI	CCSGG	2 cut(s)	30, 736
BcoDI	GTCTC	1 cut(s)	999
BfuAI	ACCTGC	1 cut(s)	284
BfuI	GTATCC	2 cut(s)	559, 571
BisI	GCNGC	1 cut(s)	978
BlsI	GCNGC	1 cut(s)	979
Bme1390I	CCNGG	3 cut(s)	30, 477, 736
Bme18I	GGWCC	3 cut(s)	5, 743, 945
BmgT120I	GGNCC	4 cut(s)	5, 732, 743, 945
BmiI	GGNNCC	3 cut(s)	6, 135, 734
BmrFI	CCNGG	3 cut(s)	30, 477, 736
BmsI	GCATC	2 cut(s)	368, 501
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	264, 1171
BpuMI	CCSGG	2 cut(s)	30, 736
BsaBI	GATNNNNATC	3 cut(s)	58, 78, 138
BsaJI	CCNNGG	2 cut(s)	153, 734
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 254, 740
Bse1I	ACTGG	1 cut(s)	66
Bse8I	GATNNNNATC	3 cut(s)	58, 78, 138
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	153, 734
BseGI	GGATG	4 cut(s)	21, 334, 842, 1141
BseJI	GATNNNNATC	3 cut(s)	58, 78, 138
BseLI	CCNNNNNNNGG	3 cut(s)	94, 254, 740
BseMII	CTCAG	1 cut(s)	801
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	989
Bsh1236I	CGCG	2 cut(s)	155, 503
BshFI	GGCC	2 cut(s)	87, 733
BsiSI	CCGG	2 cut(s)	30, 736
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	94, 254, 740
BsmAI	GTCTC	1 cut(s)	999
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	87, 733
Bsp143I	GATC	2 cut(s)	133, 793
BspACI	CCGC	5 cut(s)	153, 155, 503, 672, 985
BspANI	GGCC	2 cut(s)	87, 733
BspCNI	CTCAG	1 cut(s)	802
BspFNI	CGCG	2 cut(s)	155, 503
BspHI	TCATGA	2 cut(s)	142, 1177
BspLI	GGNNCC	3 cut(s)	6, 135, 734
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	2 cut(s)	128, 141
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	153, 734
BssMI	GATC	2 cut(s)	133, 793
BssSI	CACGAG	1 cut(s)	696
Bst2BI	CACGAG	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	3 cut(s)	164, 523, 1167
Bst6I	CTCTTC	1 cut(s)	1217
BstC8I	GCNNGC	1 cut(s)	1090
BstDEI	CTNAG	2 cut(s)	169, 810
BstDSI	CCRYGG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	431
BstF5I	GGATG	4 cut(s)	21, 334, 842, 1141
BstFNI	CGCG	2 cut(s)	155, 503
BstKTI	GATC	2 cut(s)	136, 796
BstMAI	GTCTC	1 cut(s)	999
BstMBI	GATC	2 cut(s)	133, 793
BstNI	CCWGG	1 cut(s)	477
BstPI	GGTNACC	1 cut(s)	431
BstSCI	CCNGG	3 cut(s)	28, 475, 734
BstUI	CGCG	2 cut(s)	155, 503
BstV1I	GCAGC	1 cut(s)	989
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuI	GTATCC	2 cut(s)	559, 571
BsuRI	GGCC	2 cut(s)	87, 733
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	4 cut(s)	21, 334, 842, 1141
BtsIMutI	CAGTG	2 cut(s)	73, 1089
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	1090
CaiI	CAGNNNCTG	1 cut(s)	404
CciI	TCATGA	2 cut(s)	142, 1177
Cfr13I	GGNCC	4 cut(s)	5, 732, 743, 945
Cfr42I	CCGCGG	1 cut(s)	156
CviAII	CATG	5 cut(s)	115, 143, 224, 365, 1178
DdeI	CTNAG	2 cut(s)	169, 810
DpnI	GATC	2 cut(s)	135, 795
DpnII	GATC	2 cut(s)	133, 793
DraI	TTTAAA	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	1217
EarI	CTCTTC	1 cut(s)	1217
Eco32I	GATATC	2 cut(s)	352, 1000
Eco47I	GGWCC	3 cut(s)	5, 743, 945
Eco57I	CTGAAG	4 cut(s)	426, 439, 712, 1086
Eco91I	GGTNACC	1 cut(s)	431
EcoO109I	RGGNCCY	3 cut(s)	5, 732, 743
EcoO65I	GGTNACC	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	475
EcoRV	GATATC	2 cut(s)	352, 1000
FaeI	CATG	5 cut(s)	118, 146, 227, 368, 1181
FalI	AAGNNNNNCTT	4 cut(s)	694, 726, 947, 979
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	114, 142, 223, 364, 1177
FauNDI	CATATG	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	793
Fnu4HI	GCNGC	1 cut(s)	978
FokI	GGATG	4 cut(s)	28, 341, 829, 1128
Fsp4HI	GCNGC	1 cut(s)	978
GluI	GCNGC	1 cut(s)	978
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	87, 733
HapII	CCGG	2 cut(s)	30, 736
Hin1II	CATG	5 cut(s)	118, 146, 227, 368, 1181
HincII	GTYRAC	2 cut(s)	265, 385
HindII	GTYRAC	2 cut(s)	265, 385
HpaI	GTTAAC	2 cut(s)	265, 385
HpaII	CCGG	2 cut(s)	30, 736
HphI	GGTGA	2 cut(s)	443, 1155
Hpy166II	GTNNAC	3 cut(s)	160, 265, 385
Hpy188I	TCNGA	8 cut(s)	463, 497, 592, 651, 790, 811, 876, 1004
Hpy8I	GTNNAC	3 cut(s)	160, 265, 385
HpyAV	CCTTC	2 cut(s)	1096, 1162
HpyCH4III	ACNGT	3 cut(s)	164, 523, 1167
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	977
HpyF3I	CTNAG	2 cut(s)	169, 810
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	5 cut(s)	118, 146, 227, 368, 1181
Ksp22I	TGATCA	1 cut(s)	793
KspAI	GTTAAC	2 cut(s)	265, 385
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	133, 793
Lsp1109I	GCAGC	1 cut(s)	989
LweI	GCATC	2 cut(s)	368, 501
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	4 cut(s)	110, 431, 832, 857
MalI	GATC	2 cut(s)	135, 795
MboI	GATC	2 cut(s)	133, 793
MflI	RGATCY	1 cut(s)	133
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	6 cut(s)	309, 321, 422, 480, 659, 904
MluNI	TGGCCA	1 cut(s)	87
MlyI	GAGTC	4 cut(s)	492, 596, 725, 880
MnlI	CCTC	8 cut(s)	91, 147, 205, 211, 405, 421, 870, 1195
Mox20I	TGGCCA	1 cut(s)	87
MroXI	GAANNNNTTC	4 cut(s)	122, 522, 962, 1201
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	6 cut(s)	197, 264, 299, 384, 564, 636
MslI	CAYNNNNRTG	3 cut(s)	770, 930, 1053
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	30, 736
MspR9I	CCNGG	3 cut(s)	30, 477, 736
MvaI	CCWGG	1 cut(s)	477
MvnI	CGCG	2 cut(s)	155, 503
NciI	CCSGG	2 cut(s)	30, 736
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	2 cut(s)	133, 793
NlaIII	CATG	5 cut(s)	118, 146, 227, 368, 1181
NlaIV	GGNNCC	3 cut(s)	6, 135, 734
NmuCI	GTSAC	3 cut(s)	110, 431, 857
OliI	CACNNNNGTG	1 cut(s)	930
PagI	TCATGA	2 cut(s)	142, 1177
PdmI	GAANNNNTTC	4 cut(s)	122, 522, 962, 1201
PfeI	GAWTC	8 cut(s)	54, 79, 464, 536, 646, 689, 871, 1181
PflMI	CCANNNNNTGG	2 cut(s)	94, 254
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	979
PleI	GAGTC	4 cut(s)	492, 595, 724, 880
PpsI	GAGTC	4 cut(s)	492, 595, 724, 880
PpuMI	RGGWCCY	2 cut(s)	5, 743
PsiI	TTATAA	1 cut(s)	1038
Psp5II	RGGWCCY	2 cut(s)	5, 743
Psp6I	CCWGG	1 cut(s)	475
PspEI	GGTNACC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	3 cut(s)	6, 135, 734
PspPI	GGNCC	4 cut(s)	5, 732, 743, 945
PspPPI	RGGWCCY	2 cut(s)	5, 743
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	133
RseI	CAYNNNNRTG	3 cut(s)	770, 930, 1053
SacII	CCGCGG	1 cut(s)	156
SaqAI	TTAA	6 cut(s)	197, 264, 299, 384, 564, 636
SatI	GCNGC	1 cut(s)	978
Sau3AI	GATC	2 cut(s)	133, 793
Sau96I	GGNCC	4 cut(s)	5, 732, 743, 945
SchI	GAGTC	4 cut(s)	492, 596, 725, 880
ScrFI	CCNGG	3 cut(s)	30, 477, 736
SetI	ASST	9 cut(s)	10, 175, 203, 237, 242, 298, 372, 748, 801
SfaNI	GCATC	2 cut(s)	368, 501
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SinI	GGWCC	3 cut(s)	5, 743, 945
SmiMI	CAYNNNNRTG	3 cut(s)	770, 930, 1053
SmlI	CTYRAG	2 cut(s)	279, 1186
SmoI	CTYRAG	2 cut(s)	279, 1186
Sse9I	AATT	6 cut(s)	309, 321, 422, 480, 659, 904
SsiI	CCGC	5 cut(s)	153, 155, 503, 672, 985
StyD4I	CCNGG	3 cut(s)	28, 475, 734
TaaI	ACNGT	3 cut(s)	164, 523, 1167
TaiI	ACGT	1 cut(s)	237
TaqII	GACCGA	1 cut(s)	962
TasI	AATT	6 cut(s)	309, 321, 422, 480, 659, 904
TfiI	GAWTC	8 cut(s)	54, 79, 464, 536, 646, 689, 871, 1181
Tru1I	TTAA	6 cut(s)	197, 264, 299, 384, 564, 636
Tru9I	TTAA	6 cut(s)	197, 264, 299, 384, 564, 636
TscAI	CASTG	2 cut(s)	73, 1089
TseFI	GTSAC	3 cut(s)	110, 431, 857
TseI	GCWGC	1 cut(s)	977
Tsp45I	GTSAC	3 cut(s)	110, 431, 857
TspDTI	ATGAA	9 cut(s)	131, 354, 435, 464, 764, 909, 917, 959, 1166
TspRI	CASTG	2 cut(s)	73, 1089
Van91I	CCANNNNNTGG	2 cut(s)	94, 254
VpaK11BI	GGWCC	3 cut(s)	5, 743, 945
XapI	RAATTY	3 cut(s)	309, 321, 904
XmnI	GAANNNNTTC	4 cut(s)	122, 522, 962, 1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.