Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Forward (+)

17594644 .. 17601005

Gene Structure 6362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG196300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGTGTTATAGTTTCTGTTTTTTGTCAGGTGGGCGGCATTCTGCTCATCCTCGCGGGCCGCGTTCTGCTCATCCTCGCCAAGGAGATTATGAGTTAGAACTTGGAGTTCTTGATGGATTGCTGGATGAAGTTGAAGAAGTGGAGGATATTCATGCGACAAATGGTCTTGCAAGTCCATGTGATGATTTTCTTCTAGATATTGGATTTGCGGGGAAGGTTTCTGAACTGGAATTTGGTCCTTGTGAAAGATCACATCTTGGAAACTCTGAAAGTCGGTCTCCAGGGTTAAGTGGCAGTAGTAATAGTGCAGTAGGGGTTTCAGAATCGTCAACAGTGACAATTCAAGAATTTGAGTGCAAAAATCATTCTTGTCCCAAGGAATCACCGCATAAGTTGCCTGGTGACTTCAGGCGGAAAAAAAGACGTCAGGCACCAGTTGAAGGAAGTACCTGCCCTAGTTCATTCCGTTTACAAAATCTTGAAGAGTTAGATAATAATCAGAAACCTTTAGTAAGTGGATTATTGTCCAGTGAAAATGAGAAGAGCTCCGTTGAAGCAAACAAAATTGGTGCTATTATTAAGAAGAAAAGACTGCCTAAGACTACTCGGAGACTCGTTGAAGATTCTTCAAAAAGGAAAGCAAAAGATTTAATGGGAAGTGAAAATATTTCTCATCTTGCTGCTACAGATGATCAGTGCTTGAAGGCTAGATCTCAAAATAAACTTCATCATACAAGACCTATGACATTGTCGTCAGTTCCTGAGGAGGATTCAATTTCAGATAATCTGACGCTGTCTGAATTCAAGATTCGGATAGCACGTCCAAAGAAGCAGGCAATTCGGACTGAATTTCAACCCATTACATCTGAGTCTGAAGATGAAATTGTGAGAGTGACGATATCCGAAAAGCATGATCGAAGGAAGGATCAACCGATTAAATCCAAGTCTGACAATGAAAGGGCGATCACGAAGATATCCAAAAAGCATGATCGAAGGAAGGATCAACCTATTAAATCTGAGTCTGAAGATGAAACTGTGACAAGGAGAAGATCTACAAGGCATAATCGAAGGAAGCATCAGCCTATTAACTCCGAGTCAGAAGATGAGATTGTGAGAAAGAAAAGATCTAAAAAGCATGATCGAAGGAAGCATCAAAGGATGTGGGATGTCTCTGAGGTGATGGCATTGATTGATGGTATTTCTGAATATGGAGTTGGACAATGGACACGCATAAAGAGGCTTCTATTTACATCTTCTGCTTATCGCACACCAATAGATCTCAGGGTATACTACCGTTTTCTACCAACAAAGGGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

439

Amino Acids

49.9

Weight (kDa)

9.32

Isoelectric Point (pI)

62.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	751
AatII	GACGTC	1 cut(s)	427
Acc36I	ACCTGC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	1287
AccII	CGCG	2 cut(s)	54, 61
AciI	CCGC	6 cut(s)	34, 54, 59, 209, 386, 412
AclWI	GGATC	2 cut(s)	933, 1008
AcsI	RAATTY	4 cut(s)	230, 347, 800, 848
AcuI	CTGAAG	3 cut(s)	391, 894, 1044
AcyI	GRCGYC	1 cut(s)	424
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	3 cut(s)	80, 440, 1310
AhdI	GACNNNNNGTC	1 cut(s)	162
AjiI	CACGTC	1 cut(s)	821
AjnI	CCWGG	2 cut(s)	280, 397
AjuI	GAANNNNNNNTTGG	4 cut(s)	216, 248, 1197, 1229
AluBI	AGCT	1 cut(s)	546
AluI	AGCT	1 cut(s)	546
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	3 cut(s)	282, 604, 1174
AlwI	GGATC	2 cut(s)	933, 1008
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	4 cut(s)	230, 347, 800, 848
AspS9I	GGNCC	2 cut(s)	56, 236
AsuHPI	GGTGA	3 cut(s)	375, 413, 1189
AvaII	GGWCC	1 cut(s)	236
AxyI	CCTNAGG	1 cut(s)	762
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	3 cut(s)	107, 1174, 1187
BcgI	CGANNNNNNTGC	2 cut(s)	821, 855
BciT130I	CCWGG	2 cut(s)	282, 399
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	3 cut(s)	282, 604, 1174
BfaI	CTAG	3 cut(s)	194, 456, 708
BfmI	CTRYAG	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	458
BglII	AGATCT	4 cut(s)	710, 1049, 1124, 1276
BisI	GCNGC	3 cut(s)	35, 59, 681
BlsI	GCNGC	3 cut(s)	36, 60, 682
Bme1390I	CCNGG	2 cut(s)	282, 399
Bme18I	GGWCC	1 cut(s)	236
BmeRI	GACNNNNNGTC	1 cut(s)	162
BmgBI	CACGTC	1 cut(s)	821
BmgT120I	GGNCC	2 cut(s)	56, 236
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	2 cut(s)	282, 399
BmsI	GCATC	2 cut(s)	1084, 1159
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	424
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	3 cut(s)	79, 281, 375
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 440, 1310
Bse1I	ACTGG	3 cut(s)	231, 434, 528
Bse21I	CCTNAGG	1 cut(s)	762
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	282, 399
BseDI	CCNNGG	3 cut(s)	79, 281, 375
BseGI	GGATG	5 cut(s)	46, 70, 130, 1164, 1171
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	3 cut(s)	80, 440, 1310
BseMII	CTCAG	5 cut(s)	753, 858, 1008, 1164, 1294
BseNI	ACTGG	3 cut(s)	231, 434, 528
BseRI	GAGGAG	1 cut(s)	779
BseXI	GCAGC	1 cut(s)	667
BsgI	GTGCAG	1 cut(s)	327
Bsh1236I	CGCG	2 cut(s)	54, 61
BshFI	GGCC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	3 cut(s)	80, 440, 1310
BsmAI	GTCTC	3 cut(s)	282, 604, 1174
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	58
Bso31I	GGTCTC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	548
BspACI	CCGC	6 cut(s)	34, 54, 59, 209, 386, 412
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	5 cut(s)	754, 859, 1009, 1165, 1293
BspFNI	CGCG	2 cut(s)	54, 61
BspLI	GGNNCC	1 cut(s)	432
BspMI	ACCTGC	1 cut(s)	458
BspPI	GGATC	2 cut(s)	933, 1008
BspQI	GCTCTTC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	282
BsrI	ACTGG	3 cut(s)	231, 434, 528
BssECI	CCNNGG	3 cut(s)	79, 281, 375
BssNAI	GTATAC	1 cut(s)	1288
BssNI	GRCGYC	1 cut(s)	424
BssT1I	CCWWGG	2 cut(s)	79, 375
Bst1107I	GTATAC	1 cut(s)	1288
Bst2UI	CCWGG	2 cut(s)	282, 399
Bst4CI	ACNGT	3 cut(s)	334, 1036, 1295
Bst6I	CTCTTC	2 cut(s)	477, 536
BstACI	GRCGYC	1 cut(s)	424
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstC8I	GCNNGC	2 cut(s)	56, 834
BstDEI	CTNAG	6 cut(s)	597, 762, 867, 1017, 1173, 1280
BstENI	CCTNNNNNAGG	1 cut(s)	78
BstF5I	GGATG	5 cut(s)	46, 70, 130, 1164, 1171
BstFNI	CGCG	2 cut(s)	54, 61
BstMAI	GTCTC	3 cut(s)	282, 604, 1174
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	2 cut(s)	282, 399
BstSCI	CCNGG	2 cut(s)	280, 397
BstSFI	CTRYAG	1 cut(s)	684
BstUI	CGCG	2 cut(s)	54, 61
BstV1I	GCAGC	1 cut(s)	667
BstX2I	RGATCY	4 cut(s)	710, 1049, 1124, 1276
BstYI	RGATCY	4 cut(s)	710, 1049, 1124, 1276
BstZ17I	GTATAC	1 cut(s)	1288
Bsu36I	CCTNAGG	1 cut(s)	762
BsuRI	GGCC	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	821
BtsCI	GGATG	5 cut(s)	46, 70, 130, 1164, 1171
BtsIMutI	CAGTG	3 cut(s)	339, 535, 701
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	2 cut(s)	56, 834
CaiI	CAGNNNCTG	1 cut(s)	761
Cfr13I	GGNCC	2 cut(s)	56, 236
CseI	GACGC	1 cut(s)	799
Csp6I	GTAC	1 cut(s)	447
CspCI	CAANNNNNGTGG	2 cut(s)	1142, 1177
CviAII	CATG	5 cut(s)	152, 177, 911, 986, 1136
CviJI	RGCY	5 cut(s)	58, 546, 707, 1081, 1240
CviKI_1	RGCY	5 cut(s)	58, 546, 707, 1081, 1240
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	6 cut(s)	597, 762, 867, 1017, 1173, 1280
DrdI	GACNNNNNNGTC	1 cut(s)	751
DriI	GACNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	751
Eam1104I	CTCTTC	2 cut(s)	477, 536
Eam1105I	GACNNNNNGTC	1 cut(s)	162
EarI	CTCTTC	2 cut(s)	477, 536
EciI	GGCGGA	1 cut(s)	427
Ecl136II	GAGCTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	79, 375
Eco24I	GRGCYC	1 cut(s)	548
Eco31I	GGTCTC	1 cut(s)	282
Eco32I	GATATC	2 cut(s)	900, 975
Eco47I	GGWCC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	546
Eco57I	CTGAAG	3 cut(s)	391, 894, 1044
Eco81I	CCTNAGG	1 cut(s)	762
EcoICRI	GAGCTC	1 cut(s)	546
EcoNI	CCTNNNNNAGG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	2 cut(s)	280, 397
EcoRV	GATATC	2 cut(s)	900, 975
EcoT14I	CCWWGG	2 cut(s)	79, 375
EcoT38I	GRGCYC	1 cut(s)	548
ErhI	CCWWGG	2 cut(s)	79, 375
FaeI	CATG	5 cut(s)	155, 180, 914, 989, 1139
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	5 cut(s)	151, 176, 910, 985, 1135
FauI	CCCGC	2 cut(s)	47, 202
FbaI	TGATCA	1 cut(s)	691
FblI	GTMKAC	1 cut(s)	1287
Fnu4HI	GCNGC	3 cut(s)	35, 59, 681
FokI	GGATG	5 cut(s)	33, 57, 137, 1171, 1178
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	3 cut(s)	35, 59, 681
FspBI	CTAG	3 cut(s)	194, 456, 708
GluI	GCNGC	3 cut(s)	35, 59, 681
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	58
HgaI	GACGC	1 cut(s)	799
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	5 cut(s)	155, 180, 914, 989, 1139
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	9 cut(s)	323, 380, 612, 623, 770, 808, 869, 1019, 1094
HphI	GGTGA	3 cut(s)	375, 413, 1189
Hpy166II	GTNNAC	3 cut(s)	330, 470, 1288
Hpy188III	TCNNGA	7 cut(s)	110, 194, 344, 479, 761, 805, 967
Hpy8I	GTNNAC	3 cut(s)	330, 470, 1288
HpyAV	CCTTC	9 cut(s)	208, 434, 697, 912, 916, 987, 991, 1062, 1137
HpyCH4III	ACNGT	3 cut(s)	334, 1036, 1295
HpyCH4IV	ACGT	2 cut(s)	424, 820
HpyCH4V	TGCA	3 cut(s)	170, 308, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	6 cut(s)	597, 762, 867, 1017, 1173, 1280
HpySE526I	ACGT	2 cut(s)	424, 820
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	5 cut(s)	155, 180, 914, 989, 1139
Ksp22I	TGATCA	1 cut(s)	691
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	2 cut(s)	1084, 1159
MaeI	CTAG	3 cut(s)	194, 456, 708
MaeII	ACGT	2 cut(s)	424, 820
MaeIII	GTNAC	4 cut(s)	334, 401, 892, 1036
MflI	RGATCY	4 cut(s)	710, 1049, 1124, 1276
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	9 cut(s)	230, 339, 347, 564, 774, 800, 837, 848, 882
MlyI	GAGTC	4 cut(s)	606, 878, 1028, 1103
MmeI	TCCRAC	1 cut(s)	1195
MnlI	CCTC	7 cut(s)	60, 84, 136, 757, 760, 1168, 1230
MseI	TTAA	6 cut(s)	287, 579, 650, 936, 1011, 1086
MspR9I	CCNGG	2 cut(s)	282, 399
Mva1269I	GAATGC	1 cut(s)	37
MvaI	CCWGG	2 cut(s)	282, 399
MvnI	CGCG	2 cut(s)	54, 61
MwoI	GCNNNNNNNGC	1 cut(s)	394
NlaIII	CATG	5 cut(s)	155, 180, 914, 989, 1139
NlaIV	GGNNCC	1 cut(s)	432
NmuCI	GTSAC	4 cut(s)	334, 401, 892, 1036
PciSI	GCTCTTC	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	2 cut(s)	58, 817
PctI	GAATGC	1 cut(s)	37
PfeI	GAWTC	5 cut(s)	323, 380, 623, 770, 808
PflFI	GACNNNGTC	2 cut(s)	748, 793
PkrI	GCNGC	3 cut(s)	36, 60, 682
PleI	GAGTC	4 cut(s)	606, 877, 1027, 1102
PpsI	GAGTC	4 cut(s)	606, 877, 1027, 1102
Psp124BI	GAGCTC	1 cut(s)	548
Psp6I	CCWGG	2 cut(s)	280, 397
PspGI	CCWGG	2 cut(s)	280, 397
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	2 cut(s)	56, 236
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	4 cut(s)	710, 1049, 1124, 1276
PsyI	GACNNNGTC	2 cut(s)	748, 793
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SacI	GAGCTC	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	6 cut(s)	287, 579, 650, 936, 1011, 1086
SatI	GCNGC	3 cut(s)	35, 59, 681
Sau96I	GGNCC	2 cut(s)	56, 236
SchI	GAGTC	4 cut(s)	606, 878, 1028, 1103
ScrFI	CCNGG	2 cut(s)	282, 399
SduI	GDGCHC	1 cut(s)	548
SfaNI	GCATC	2 cut(s)	1084, 1159
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	236
Sse9I	AATT	9 cut(s)	230, 339, 347, 564, 774, 800, 837, 848, 882
SsiI	CCGC	6 cut(s)	34, 54, 59, 209, 386, 412
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	3 cut(s)	194, 456, 708
SstI	GAGCTC	1 cut(s)	548
StyD4I	CCNGG	2 cut(s)	280, 397
StyI	CCWWGG	2 cut(s)	79, 375
TaaI	ACNGT	3 cut(s)	334, 1036, 1295
TaiI	ACGT	2 cut(s)	427, 823
TaqI	TCGA	4 cut(s)	916, 991, 1066, 1141
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	9 cut(s)	230, 339, 347, 564, 774, 800, 837, 848, 882
TauI	GCSGC	2 cut(s)	37, 61
TfiI	GAWTC	5 cut(s)	323, 380, 623, 770, 808
Tru1I	TTAA	6 cut(s)	287, 579, 650, 936, 1011, 1086
Tru9I	TTAA	6 cut(s)	287, 579, 650, 936, 1011, 1086
TscAI	CASTG	3 cut(s)	339, 535, 701
TseFI	GTSAC	4 cut(s)	334, 401, 892, 1036
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	4 cut(s)	334, 401, 892, 1036
TspDTI	ATGAA	7 cut(s)	140, 141, 450, 716, 894, 969, 1044
TspGWI	ACGGA	2 cut(s)	455, 538
TspRI	CASTG	3 cut(s)	339, 535, 701
Tth111I	GACNNNGTC	2 cut(s)	748, 793
VpaK11BI	GGWCC	1 cut(s)	236
XagI	CCTNNNNNAGG	1 cut(s)	78
XapI	RAATTY	4 cut(s)	230, 347, 800, 848
XbaI	TCTAGA	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	1287
XspI	CTAG	3 cut(s)	194, 456, 708
ZraI	GACGTC	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.