Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Forward (+)

17582635 .. 17586393

Gene Structure 3759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1095600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTATTTTGGTGGGTTGCTTTCTGCTCATCCTCAGGGAAGACACAATGAATTAGAACTTGGAGGTCTTGACGGATTGCTGGATGAAGTTGATGAAGTGGACTATATACATGCAATAAATGGTCTTGCCAGCCCTTGCGATGATTATCTTCTAGATATTGGATTCATGGGACAAGCTTCTGAACCGGGTTTTGGTTCTTGTGAAGGATCACGTAAAACAAACTCAAGTTCTGCAAGTCAGTCTCCAGGATTAAGTGGTAGTAGTAACAGTACTGTTGGGATATCTGAATCGTCAACTGTGACTATTCAAGAATTTGAATGCAAGAATAATTCTATTGACAAGGCAGTAACTCATGGGTTCCATGGAAACTTCAGGCAGAAAAAAAGACGTCGAACACCGGTCGCCTATCCTGCTTCAATCATTTTACAAAATCTTGATGAGTTAGATATTGATGAAAAACCTTCAGTAAGTGGAATGGTGTCTGCTGCTTTTCTTAAGGAGAAAAGACCACTTAAGCCTACTCGAAGATACATTGAGGAATTTTCGGACAAGATGTCAAAAGATTCCAAGGGGAGGGAAGATTGTTCTGCTGTTACTGCTGTAGAGAGTCGACGCTCGAAGGTCAGATCACAAAATAAACATCATCATCTGAGGCCTAGGACATTGGCATTAGTAACCGGGGATGATTTAATTTCTGAAAACCAGACACTGGCTGAATTCAGGAAGCAAAGAGCACGTCGAAAGAAGTATGCATCAATTTCGATGCTTGAGTGCGATGAATCTGACGAGTCATATGAGTCCAATGAGCAACTTTTGACATCTGAATCTGAAGATGACTATGTGTCAAGAAAAAGATCGACAAAGCACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

291

Amino Acids

32.27

Weight (kDa)

5.9

Isoelectric Point (pI)

64.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	391
AccB7I	CCANNNNNTGG	1 cut(s)	709
AccI	GTMKAC	1 cut(s)	610
AclWI	GGATC	1 cut(s)	214
AcsI	RAATTY	3 cut(s)	311, 539, 716
AcuI	CTGAAG	3 cut(s)	355, 447, 849
AcyI	GRCGYC	1 cut(s)	388
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	3 cut(s)	191, 573, 709
AflII	CTTAAG	2 cut(s)	494, 512
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	308, 317, 417
AhdI	GACNNNNNGTC	2 cut(s)	553, 841
AjiI	CACGTC	1 cut(s)	737
AjnI	CCWGG	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	4 cut(s)	42, 74, 174, 206
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	736
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	214
AlwNI	CAGNNNCTG	1 cut(s)	709
AoxI	GGCC	1 cut(s)	653
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	3 cut(s)	311, 539, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	721, 753
AsiGI	ACCGGT	1 cut(s)	397
AspA2I	CCTAGG	1 cut(s)	656
AsuC2I	CCSGG	2 cut(s)	186, 679
AvrII	CCTAGG	1 cut(s)	656
AxyI	CCTNAGG	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	1 cut(s)	472
BcgI	CGANNNNNNTGC	2 cut(s)	741, 775
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	2 cut(s)	186, 679
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	2 cut(s)	152, 657
BfmI	CTRYAG	1 cut(s)	600
BfrI	CTTAAG	2 cut(s)	494, 512
BisI	GCNGC	1 cut(s)	486
BlnI	CCTAGG	1 cut(s)	656
BlsI	GCNGC	1 cut(s)	487
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	3 cut(s)	186, 246, 679
BmeRI	GACNNNNNGTC	2 cut(s)	553, 841
BmgBI	CACGTC	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	3 cut(s)	186, 246, 679
BmsI	GCATC	2 cut(s)	753, 761
BpiI	GAAGAC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	208, 788
BpuMI	CCSGG	2 cut(s)	186, 679
BsaAI	YACGTR	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	388
BsaJI	CCNNGG	4 cut(s)	361, 567, 656, 678
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 573, 709
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	1 cut(s)	714
Bse21I	CCTNAGG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	4 cut(s)	361, 567, 656, 678
BseGI	GGATG	3 cut(s)	28, 88, 688
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	3 cut(s)	191, 573, 709
BseMII	CTCAG	2 cut(s)	47, 641
BseNI	ACTGG	1 cut(s)	714
BseXI	GCAGC	1 cut(s)	472
Bsh1285I	CGRYCG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	655
BshTI	ACCGGT	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	736
BsiSI	CCGG	3 cut(s)	185, 398, 678
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	3 cut(s)	191, 573, 709
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp143I	GATC	3 cut(s)	206, 626, 854
Bsp19I	CCATGG	1 cut(s)	361
BspANI	GGCC	1 cut(s)	655
BspCNI	CTCAG	2 cut(s)	46, 642
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	214
BspTI	CTTAAG	2 cut(s)	494, 512
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	714
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	4 cut(s)	361, 567, 656, 678
BssMI	GATC	3 cut(s)	206, 626, 854
BssNI	GRCGYC	1 cut(s)	388
BssT1I	CCWWGG	3 cut(s)	361, 567, 656
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	269, 274, 298
BstACI	GRCGYC	1 cut(s)	388
BstAFI	CTTAAG	2 cut(s)	494, 512
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	33, 650
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	3 cut(s)	28, 88, 688
BstKTI	GATC	3 cut(s)	209, 629, 857
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	3 cut(s)	206, 626, 854
BstMCI	CGRYCG	1 cut(s)	402
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 596
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	3 cut(s)	184, 244, 677
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	655
BtgI	CCRYGG	1 cut(s)	361
BtgZI	GCGATG	2 cut(s)	153, 789
BtrI	CACGTC	1 cut(s)	737
BtsCI	GGATG	3 cut(s)	28, 88, 688
BtsIMutI	CAGTG	1 cut(s)	707
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	709
Cfr10I	RCCGGY	1 cut(s)	397
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	270
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	4 cut(s)	110, 166, 353, 362
CviJI	RGCY	5 cut(s)	132, 176, 517, 655, 713
CviKI_1	RGCY	5 cut(s)	132, 176, 517, 655, 713
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	2 cut(s)	33, 650
DpnI	GATC	3 cut(s)	208, 628, 856
DpnII	GATC	3 cut(s)	206, 626, 854
DriI	GACNNNNNGTC	2 cut(s)	553, 841
Eam1105I	GACNNNNNGTC	2 cut(s)	553, 841
Eco130I	CCWWGG	3 cut(s)	361, 567, 656
Eco147I	AGGCCT	1 cut(s)	655
Eco32I	GATATC	1 cut(s)	282
Eco57I	CTGAAG	3 cut(s)	355, 447, 849
Eco81I	CCTNAGG	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	282
EcoT14I	CCWWGG	3 cut(s)	361, 567, 656
EcoT22I	ATGCAT	1 cut(s)	754
ErhI	CCWWGG	3 cut(s)	361, 567, 656
FaeI	CATG	4 cut(s)	113, 169, 356, 365
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	4 cut(s)	109, 165, 352, 361
FauNDI	CATATG	1 cut(s)	793
FblI	GTMKAC	1 cut(s)	610
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	3 cut(s)	15, 95, 695
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	2 cut(s)	152, 657
GluI	GCNGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	655
HapII	CCGG	3 cut(s)	185, 398, 678
HgaI	GACGC	1 cut(s)	621
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	4 cut(s)	113, 169, 356, 365
HincII	GTYRAC	2 cut(s)	294, 611
HindII	GTYRAC	2 cut(s)	294, 611
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	8 cut(s)	162, 287, 563, 607, 779, 788, 797, 824
HpaII	CCGG	3 cut(s)	185, 398, 678
Hpy166II	GTNNAC	3 cut(s)	100, 294, 611
Hpy188I	TCNGA	9 cut(s)	181, 286, 547, 626, 651, 697, 784, 823, 829
Hpy188III	TCNNGA	6 cut(s)	68, 152, 308, 434, 721, 846
Hpy8I	GTNNAC	3 cut(s)	100, 294, 611
Hpy99I	CGWCG	3 cut(s)	393, 615, 741
HpyAV	CCTTC	3 cut(s)	197, 471, 613
HpyCH4III	ACNGT	3 cut(s)	269, 274, 298
HpyCH4IV	ACGT	3 cut(s)	211, 388, 736
HpyCH4V	TGCA	4 cut(s)	113, 233, 321, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 596
HpyF3I	CTNAG	2 cut(s)	33, 650
HpySE526I	ACGT	3 cut(s)	211, 388, 736
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	4 cut(s)	113, 169, 356, 365
Kzo9I	GATC	3 cut(s)	206, 626, 854
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	2 cut(s)	753, 761
MaeI	CTAG	2 cut(s)	152, 657
MaeII	ACGT	3 cut(s)	211, 388, 736
MaeIII	GTNAC	5 cut(s)	263, 298, 346, 592, 673
MalI	GATC	3 cut(s)	208, 628, 856
MboI	GATC	3 cut(s)	206, 626, 854
MboII	GAAGA	5 cut(s)	51, 140, 537, 590, 842
MhlI	GDGCHC	1 cut(s)	736
MluCI	AATT	7 cut(s)	50, 311, 328, 539, 690, 716, 756
MlyI	GAGTC	3 cut(s)	616, 797, 806
MnlI	CCTC	5 cut(s)	42, 56, 529, 567, 645
Mph1103I	ATGCAT	1 cut(s)	754
MseI	TTAA	4 cut(s)	251, 495, 513, 689
MspCI	CTTAAG	2 cut(s)	494, 512
MspI	CCGG	3 cut(s)	185, 398, 678
MspR9I	CCNGG	3 cut(s)	186, 246, 679
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	410, 596
NciI	CCSGG	2 cut(s)	186, 679
NcoI	CCATGG	1 cut(s)	361
NdeI	CATATG	1 cut(s)	793
NdeII	GATC	3 cut(s)	206, 626, 854
NlaIII	CATG	4 cut(s)	113, 169, 356, 365
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	655
PctI	GAATGC	1 cut(s)	323
PfeI	GAWTC	5 cut(s)	162, 287, 563, 779, 824
PflMI	CCANNNNNTGG	1 cut(s)	709
PfoI	TCCNGGA	1 cut(s)	244
PinAI	ACCGGT	1 cut(s)	397
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	3 cut(s)	615, 796, 805
PpsI	GAGTC	3 cut(s)	615, 796, 805
Ppu21I	YACGTR	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	359
PstNI	CAGNNNCTG	1 cut(s)	709
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	609
SaqAI	TTAA	4 cut(s)	251, 495, 513, 689
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	3 cut(s)	206, 626, 854
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	3 cut(s)	616, 797, 806
ScrFI	CCNGG	3 cut(s)	186, 246, 679
SduI	GDGCHC	1 cut(s)	736
SetI	ASST	7 cut(s)	67, 178, 214, 391, 463, 624, 739
SfaNI	GCATC	2 cut(s)	753, 761
SfcI	CTRYAG	1 cut(s)	600
SmlI	CTYRAG	4 cut(s)	223, 494, 512, 767
SmoI	CTYRAG	4 cut(s)	223, 494, 512, 767
Sse9I	AATT	7 cut(s)	50, 311, 328, 539, 690, 716, 756
SseBI	AGGCCT	1 cut(s)	655
SspMI	CTAG	2 cut(s)	152, 657
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	3 cut(s)	184, 244, 677
StyI	CCWWGG	3 cut(s)	361, 567, 656
TaaI	ACNGT	3 cut(s)	269, 274, 298
TaiI	ACGT	3 cut(s)	214, 391, 739
TaqI	TCGA	7 cut(s)	391, 523, 610, 617, 739, 761, 857
TasI	AATT	7 cut(s)	50, 311, 328, 539, 690, 716, 756
TatI	WGTACW	1 cut(s)	269
TfiI	GAWTC	5 cut(s)	162, 287, 563, 779, 824
Tru1I	TTAA	4 cut(s)	251, 495, 513, 689
Tru9I	TTAA	4 cut(s)	251, 495, 513, 689
TscAI	CASTG	1 cut(s)	714
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	6 cut(s)	63, 99, 108, 154, 468, 792
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	714
Van91I	CCANNNNNTGG	1 cut(s)	709
Vha464I	CTTAAG	2 cut(s)	494, 512
XapI	RAATTY	3 cut(s)	311, 539, 716
XbaI	TCTAGA	1 cut(s)	151
XceI	RCATGY	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	610
XspI	CTAG	2 cut(s)	152, 657
ZraI	GACGTC	1 cut(s)	389
ZrmI	AGTACT	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.