Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Forward (+)

13737860 .. 13739016

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGACATTTATGGCGTATATTGGATTTATAGGACAAGCTTCTCAACTGGGTTTTGGTCCTTGTGAAGGATCACGTTTAAGGAACTCAAGTTCTGCAAGTCAGTCGCCAGGATTAAGTGGTAGTAGTAACAGTGCTGTTGGGATATCTGAATCATCAACTGTGACTATTCAGGAATTTGAATGCAAGAATAGTTCTATTGACAAGGCAGTAACTCATGGGTCCCATGGTAACTTCAGGCAGAAGAAAAGACATCGAACACCAGTTGCCCATCCTGCTTCGATCAATTTACAAAATCTTGACGAGTTAGATAACGATGAAAAACCTTCAGTAAGTGGAATAGTGTCTGCTGCTTTTATTAAGGAGAAAAGACTACGTAAACCTACTCGAAGATACATTGAGGAATTTTTGGGCAAGAAGTCAAAAGATTCCAAGGGGAGGGAAGATTGTTCTGCTGTTACTGCTACAGAGAATGGACGATTGAAGGTCAGATCTCAGAATAAACATCATCATCAGAGACACTGGCTGAATTCAGGAAGCAAAGAACACGTCGAAAGAAATATGCATCAATTTCGATTGCTATGGTTGTTGCTTTCCACTGAAGGCTCAGCTGTTGTGATGTTCATCGACTTGAAAGAAAGAAAAAACATAGAAATCAGAGTGAATTTATTTCTTCTCTATTTGAACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

230

Amino Acids

25.72

Weight (kDa)

9.76

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	4 cut(s)	173, 401, 526, 661
AcuI	CTGAAG	3 cut(s)	217, 309, 618
AfiI	CCNNNNNNNGG	2 cut(s)	65, 435
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	4 cut(s)	179, 481, 631, 682
AjiI	CACGTC	1 cut(s)	547
AjnI	CCWGG	1 cut(s)	106
AloI	GAACNNNNNNTCC	2 cut(s)	73, 105
AluBI	AGCT	2 cut(s)	38, 608
AluI	AGCT	2 cut(s)	38, 608
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	4 cut(s)	173, 401, 526, 661
ArsI	GACNNNNNNTTYG	2 cut(s)	531, 563
AspS9I	GGNCC	2 cut(s)	56, 219
AvaII	GGWCC	2 cut(s)	56, 219
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	276
BcgI	CGANNNNNNTGC	4 cut(s)	84, 118, 551, 585
BciT130I	CCWGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	1 cut(s)	688
BfmI	CTRYAG	1 cut(s)	462
BglII	AGATCT	1 cut(s)	488
BisI	GCNGC	1 cut(s)	348
BlpI	GCTNAGC	1 cut(s)	604
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	2 cut(s)	56, 219
BmgBI	CACGTC	1 cut(s)	547
BmgT120I	GGNCC	2 cut(s)	56, 219
BmiI	GGNNCC	2 cut(s)	220, 221
BmrFI	CCNGG	1 cut(s)	108
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	571
BmuI	ACTGGG	1 cut(s)	56
Bpu1102I	GCTNAGC	1 cut(s)	604
BpuEI	CTTGAG	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	223, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 435
Bse1I	ACTGG	3 cut(s)	51, 260, 524
Bse8I	GATNNNNATC	1 cut(s)	620
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	223, 429
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	620
BseLI	CCNNNNNNNGG	2 cut(s)	65, 435
BseMII	CTCAG	2 cut(s)	506, 618
BseNI	ACTGG	3 cut(s)	51, 260, 524
BseXI	GCAGC	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	65, 435
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	68, 279, 488
Bsp1720I	GCTNAGC	1 cut(s)	604
Bsp19I	CCATGG	1 cut(s)	223
BspCNI	CTCAG	2 cut(s)	505, 617
BspLI	GGNNCC	2 cut(s)	220, 221
BspPI	GGATC	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	51, 260, 524
BssECI	CCNNGG	2 cut(s)	223, 429
BssMI	GATC	3 cut(s)	68, 279, 488
BssT1I	CCWWGG	2 cut(s)	223, 429
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	131, 160
BstBAI	YACGTR	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	492, 604
BstDSI	CCRYGG	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	3 cut(s)	71, 282, 491
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	3 cut(s)	68, 279, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 458
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	462
BstSNI	TACGTA	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	223
BtrI	CACGTC	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	3 cut(s)	136, 517, 594
Cfr13I	GGNCC	2 cut(s)	56, 219
CviAII	CATG	2 cut(s)	215, 224
CviJI	RGCY	4 cut(s)	38, 523, 603, 608
CviKI_1	RGCY	4 cut(s)	38, 523, 603, 608
DdeI	CTNAG	2 cut(s)	492, 604
DpnI	GATC	3 cut(s)	70, 281, 490
DpnII	GATC	3 cut(s)	68, 279, 488
Eco105I	TACGTA	1 cut(s)	374
Eco130I	CCWWGG	2 cut(s)	223, 429
Eco32I	GATATC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	56, 219
Eco57I	CTGAAG	3 cut(s)	217, 309, 618
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	144
EcoT14I	CCWWGG	2 cut(s)	223, 429
EcoT22I	ATGCAT	1 cut(s)	564
ErhI	CCWWGG	2 cut(s)	223, 429
FaeI	CATG	2 cut(s)	218, 227
FaiI	YATR	8 cut(s)	11, 18, 29, 216, 225, 560, 580, 647
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	2 cut(s)	214, 223
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	688
GluI	GCNGC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	218, 227
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	2 cut(s)	149, 425
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	5 cut(s)	148, 488, 495, 513, 656
Hpy188III	TCNNGA	3 cut(s)	170, 296, 531
Hpy8I	GTNNAC	1 cut(s)	377
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	4 cut(s)	59, 333, 475, 593
HpyCH4III	ACNGT	2 cut(s)	131, 160
HpyCH4IV	ACGT	3 cut(s)	73, 373, 546
HpyCH4V	TGCA	3 cut(s)	95, 183, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 458
HpyF3I	CTNAG	2 cut(s)	492, 604
HpySE526I	ACGT	3 cut(s)	73, 373, 546
Hsp92II	CATG	2 cut(s)	218, 227
KflI	GGGWCCC	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	68, 279, 488
LpnPI	CCDG	9 cut(s)	32, 93, 120, 155, 220, 273, 285, 505, 516
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	1 cut(s)	688
MaeII	ACGT	3 cut(s)	73, 373, 546
MaeIII	GTNAC	5 cut(s)	125, 160, 208, 227, 454
MalI	GATC	3 cut(s)	70, 281, 490
MboI	GATC	3 cut(s)	68, 279, 488
MboII	GAAGA	4 cut(s)	253, 399, 452, 662
MflI	RGATCY	1 cut(s)	488
MluCI	AATT	6 cut(s)	173, 283, 401, 526, 566, 661
MnlI	CCTC	2 cut(s)	391, 429
Mph1103I	ATGCAT	1 cut(s)	564
MseI	TTAA	3 cut(s)	77, 113, 357
MspA1I	CMGCKG	1 cut(s)	608
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	272, 458
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	3 cut(s)	68, 279, 488
NlaIII	CATG	2 cut(s)	218, 227
NlaIV	GGNNCC	2 cut(s)	220, 221
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	564
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	149, 425
PkrI	GCNGC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	374
PpuMI	RGGWCCY	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	220, 221
PspPI	GGNCC	2 cut(s)	56, 219
PspPPI	RGGWCCY	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	488
PvuII	CAGCTG	1 cut(s)	608
SaqAI	TTAA	3 cut(s)	77, 113, 357
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	3 cut(s)	68, 279, 488
Sau96I	GGNCC	2 cut(s)	56, 219
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	8 cut(s)	40, 76, 325, 376, 382, 486, 549, 610
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	2 cut(s)	56, 219
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SnaBI	TACGTA	1 cut(s)	374
Sse9I	AATT	6 cut(s)	173, 283, 401, 526, 566, 661
SspMI	CTAG	1 cut(s)	688
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	2 cut(s)	223, 429
TaaI	ACNGT	2 cut(s)	131, 160
TaiI	ACGT	3 cut(s)	76, 376, 549
TaqI	TCGA	6 cut(s)	253, 278, 385, 549, 571, 624
TasI	AATT	6 cut(s)	173, 283, 401, 526, 566, 661
TfiI	GAWTC	2 cut(s)	149, 425
Tru1I	TTAA	3 cut(s)	77, 113, 357
Tru9I	TTAA	3 cut(s)	77, 113, 357
TscAI	CASTG	3 cut(s)	136, 524, 601
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	330, 610
TspRI	CASTG	3 cut(s)	136, 524, 601
VpaK11BI	GGWCC	2 cut(s)	56, 219
XagI	CCTNNNNNAGG	1 cut(s)	63
XapI	RAATTY	4 cut(s)	173, 401, 526, 661
XspI	CTAG	1 cut(s)	688
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.