Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008347.1

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Reverse (-)

18056 .. 21689

Gene Structure 3634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008347.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

atgaaatcccaaagggtgaaagtggaagattcatttgctcctgcactggatgatgaaaccgaaacaattgagcacttgcttgcagaacctaaaactgaatgtgttacagtagatgtcgaagaagtggaggatattcatgcaacaaatggtctcgcaagtccatgtgatgattttcttctagatattggatttacggggaaggtttctgaactggaatttggtccttgtgaaagatcacatcttggaaactctgaaagtcggtctccagggttaagtggcagtagtaatagtgcagtaggggtttcagaatcgtctacagtgacaattcaagaatttgagtgcaaaaatcattcttgtcccaaggaatcacctcataagttgcctggtgacttcaggcggaaaaaaagacgtcaggcaccagttgaaggaagtacctgccctagttcattcagtttacaaaatcttgaagagttagataataatcagaaacctttagtaagtggattattgtccagtgaaaatgagaagagctccgttgaagcaaacaaaattggtgctattattaagaagaaaagactgcctaagactactcggagacacattgaagattcttcaaaaaggaaagcaaaagatttaatgggaagtgaaaatatttctcatcttgctgctacagatgatcagtgcttgaaggctagatctcagaataaacttcatcatacaagacctatgacattgtcgtcagttcctgaggaggattcaatttcagataatctgacgctgtctgaattcaagattcggatagcacgtccaaagaagcaggcaattcggactgaatttcaacccattacatctgagtctgaagatgaaattgtcagagtgacgatatccgaaaagcatgatcgaaggaaggatcaaccgattaaatccaagtctgacaatgaaagggcgatcacgaagatatccaaaaagcatgatcgaaggaaggatcaacttattaaatctgagtctgaagatgaaactgtgacaaggagaagatctacaaggcataatcgaaggaagcatcagcctgttaactccgagtccgaagatgagattgtgagaaagaaaagatctaaaaagcatgatcgaaggaagcatcaaaggatgtgggatgtctctgaggtgatggcattgattgatggtatttctgaatatggagttggacaatggacacgcataaagaggcttctatttacatcttctgcttatcgcacaccaatagatctcagggacaaatggagaaatcttctgagaagtagctgtcgaaggaaactgaagaaagaggttgaggaaaacgaggagaatgacatgcatttaccaaagtcactaatataccgtgtccgtgagctggcaaagaaacatccatatccaaggcagcgtggtaaaaagtgttcccctgccatactccctgctgaaagcaaaggtgcttcgactgaccttatcattaagtatgtgagaaggaagaaccgttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

504

Amino Acids

57.69

Weight (kDa)

9.44

Isoelectric Point (pI)

70.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	736
AatII	GACGTC	1 cut(s)	412
Acc36I	ACCTGC	1 cut(s)	443
AccB1I	GGYRCC	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	314
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	2 cut(s)	918, 993
AcsI	RAATTY	4 cut(s)	215, 332, 785, 833
AcuI	CTGAAG	4 cut(s)	376, 879, 1029, 1334
AcyI	GRCGYC	1 cut(s)	409
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	2 cut(s)	425, 1387
AjiI	CACGTC	1 cut(s)	806
AjnI	CCWGG	2 cut(s)	265, 382
AjuI	GAANNNNNNNTTGG	4 cut(s)	201, 233, 1182, 1214
AloI	GAACNNNNNNTCC	1 cut(s)	1492
AluBI	AGCT	3 cut(s)	531, 1299, 1387
AluI	AGCT	3 cut(s)	531, 1299, 1387
Alw21I	GWGCWC	2 cut(s)	75, 533
Alw26I	GTCTC	4 cut(s)	155, 267, 589, 1159
AlwI	GGATC	2 cut(s)	918, 993
AlwNI	CAGNNNCTG	1 cut(s)	746
ApeKI	GCWGC	2 cut(s)	665, 1414
ApoI	RAATTY	4 cut(s)	215, 332, 785, 833
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	4 cut(s)	28, 360, 398, 1174
AvaII	GGWCC	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	747
BanI	GGYRCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	533
Bbv12I	GWGCWC	2 cut(s)	75, 533
BbvI	GCAGC	2 cut(s)	652, 1426
BccI	CCATC	2 cut(s)	1159, 1172
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BciT130I	CCWGG	2 cut(s)	267, 384
BclI	TGATCA	1 cut(s)	676
BcoDI	GTCTC	4 cut(s)	155, 267, 589, 1159
BfaI	CTAG	3 cut(s)	179, 441, 693
BfmI	CTRYAG	2 cut(s)	315, 669
BfuAI	ACCTGC	1 cut(s)	443
BglII	AGATCT	4 cut(s)	695, 1034, 1109, 1261
BisI	GCNGC	2 cut(s)	666, 1415
BlsI	GCNGC	2 cut(s)	667, 1416
Bme1390I	CCNGG	2 cut(s)	267, 384
Bme18I	GGWCC	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	2 cut(s)	267, 384
BmsI	GCATC	2 cut(s)	1069, 1144
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	1 cut(s)	249
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	409
BsaI	GGTCTC	2 cut(s)	155, 267
BsaJI	CCNNGG	3 cut(s)	266, 360, 1409
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 1387
Bse1I	ACTGG	4 cut(s)	51, 216, 419, 513
Bse21I	CCTNAGG	1 cut(s)	747
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	267, 384
BseDI	CCNNGG	3 cut(s)	266, 360, 1409
BseGI	GGATG	4 cut(s)	55, 1149, 1156, 1399
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	425, 1387
BseMII	CTCAG	7 cut(s)	713, 738, 843, 993, 1149, 1279, 1280
BseNI	ACTGG	4 cut(s)	51, 216, 419, 513
BseRI	GAGGAG	2 cut(s)	764, 1352
BseXI	GCAGC	2 cut(s)	652, 1426
BsgI	GTGCAG	2 cut(s)	27, 312
BshNI	GGYRCC	1 cut(s)	415
BsiHKAI	GWGCWC	2 cut(s)	75, 533
BslFI	GGGAC	2 cut(s)	342, 1283
BslI	CCNNNNNNNGG	2 cut(s)	425, 1387
BsmAI	GTCTC	4 cut(s)	155, 267, 589, 1159
BsmFI	GGGAC	2 cut(s)	342, 1283
Bso31I	GGTCTC	2 cut(s)	155, 267
Bsp1286I	GDGCHC	2 cut(s)	75, 533
BspACI	CCGC	1 cut(s)	397
BspCNI	CTCAG	7 cut(s)	712, 739, 844, 994, 1150, 1278, 1281
BspLI	GGNNCC	1 cut(s)	417
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	918, 993
BspQI	GCTCTTC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	415
BspTNI	GGTCTC	2 cut(s)	155, 267
BsrI	ACTGG	4 cut(s)	51, 216, 419, 513
BssECI	CCNNGG	3 cut(s)	266, 360, 1409
BssNI	GRCGYC	1 cut(s)	409
BssT1I	CCWWGG	2 cut(s)	360, 1409
Bst2UI	CCWGG	2 cut(s)	267, 384
Bst4CI	ACNGT	5 cut(s)	109, 319, 1021, 1376, 1508
Bst6I	CTCTTC	2 cut(s)	462, 521
BstACI	GRCGYC	1 cut(s)	409
BstC8I	GCNNGC	3 cut(s)	81, 819, 1389
BstDEI	CTNAG	8 cut(s)	582, 699, 747, 852, 1002, 1158, 1265, 1289
BstF5I	GGATG	4 cut(s)	55, 1149, 1156, 1399
BstMAI	GTCTC	4 cut(s)	155, 267, 589, 1159
BstNI	CCWGG	2 cut(s)	267, 384
BstNSI	RCATGY	1 cut(s)	1351
BstSCI	CCNGG	2 cut(s)	265, 382
BstSFI	CTRYAG	2 cut(s)	315, 669
BstV1I	GCAGC	2 cut(s)	652, 1426
BstX2I	RGATCY	4 cut(s)	695, 1034, 1109, 1261
BstYI	RGATCY	4 cut(s)	695, 1034, 1109, 1261
Bsu36I	CCTNAGG	1 cut(s)	747
BtrI	CACGTC	1 cut(s)	806
BtsCI	GGATG	4 cut(s)	55, 1149, 1156, 1399
BtsIMutI	CAGTG	4 cut(s)	44, 324, 520, 686
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	3 cut(s)	81, 819, 1389
CaiI	CAGNNNCTG	1 cut(s)	746
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	784
Csp6I	GTAC	1 cut(s)	432
CspCI	CAANNNNNGTGG	2 cut(s)	1127, 1162
CviAII	CATG	6 cut(s)	137, 162, 896, 971, 1121, 1348
CviJI	RGCY	6 cut(s)	531, 692, 1066, 1225, 1299, 1387
CviKI_1	RGCY	6 cut(s)	531, 692, 1066, 1225, 1299, 1387
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	8 cut(s)	582, 699, 747, 852, 1002, 1158, 1265, 1289
DrdI	GACNNNNNNGTC	1 cut(s)	736
DseDI	GACNNNNNNGTC	1 cut(s)	736
Eam1104I	CTCTTC	2 cut(s)	462, 521
EarI	CTCTTC	2 cut(s)	462, 521
EciI	GGCGGA	1 cut(s)	412
Ecl136II	GAGCTC	1 cut(s)	531
Eco130I	CCWWGG	2 cut(s)	360, 1409
Eco24I	GRGCYC	1 cut(s)	533
Eco31I	GGTCTC	2 cut(s)	155, 267
Eco32I	GATATC	2 cut(s)	885, 960
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	531
Eco57I	CTGAAG	4 cut(s)	376, 879, 1029, 1334
Eco81I	CCTNAGG	1 cut(s)	747
EcoICRI	GAGCTC	1 cut(s)	531
EcoRI	GAATTC	1 cut(s)	785
EcoRII	CCWGG	2 cut(s)	265, 382
EcoRV	GATATC	2 cut(s)	885, 960
EcoT14I	CCWWGG	2 cut(s)	360, 1409
EcoT22I	ATGCAT	1 cut(s)	1353
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	2 cut(s)	360, 1409
FaeI	CATG	6 cut(s)	140, 165, 899, 974, 1124, 1351
FaqI	GGGAC	2 cut(s)	342, 1283
FatI	CATG	6 cut(s)	136, 161, 895, 970, 1120, 1347
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	2 cut(s)	666, 1415
FokI	GGATG	4 cut(s)	62, 1156, 1163, 1386
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	2 cut(s)	666, 1415
FspBI	CTAG	3 cut(s)	179, 441, 693
GluI	GCNGC	2 cut(s)	666, 1415
GsuI	CTGGAG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	784
Hin1I	GRCGYC	1 cut(s)	409
Hin1II	CATG	6 cut(s)	140, 165, 899, 974, 1124, 1351
HincII	GTYRAC	1 cut(s)	1072
HindII	GTYRAC	1 cut(s)	1072
HinfI	GANTC	9 cut(s)	29, 308, 365, 608, 755, 793, 854, 1004, 1079
HpaI	GTTAAC	1 cut(s)	1072
HphI	GGTGA	4 cut(s)	28, 360, 398, 1174
Hpy166II	GTNNAC	3 cut(s)	315, 455, 1072
Hpy188III	TCNNGA	7 cut(s)	179, 329, 464, 746, 790, 952, 1512
Hpy8I	GTNNAC	3 cut(s)	315, 455, 1072
HpyCH4III	ACNGT	5 cut(s)	109, 319, 1021, 1376, 1508
HpyCH4IV	ACGT	2 cut(s)	409, 805
HpyCH4V	TGCA	6 cut(s)	44, 83, 140, 293, 342, 1351
HpyF3I	CTNAG	8 cut(s)	582, 699, 747, 852, 1002, 1158, 1265, 1289
HpySE526I	ACGT	2 cut(s)	409, 805
Hsp92I	GRCGYC	1 cut(s)	409
Hsp92II	CATG	6 cut(s)	140, 165, 899, 974, 1124, 1351
Ksp22I	TGATCA	1 cut(s)	676
KspAI	GTTAAC	1 cut(s)	1072
LguI	GCTCTTC	1 cut(s)	521
LmnI	GCTCC	2 cut(s)	43, 536
Lsp1109I	GCAGC	2 cut(s)	652, 1426
LweI	GCATC	2 cut(s)	1069, 1144
MaeI	CTAG	3 cut(s)	179, 441, 693
MaeII	ACGT	2 cut(s)	409, 805
MaeIII	GTNAC	6 cut(s)	103, 319, 386, 877, 1021, 1362
MfeI	CAATTG	1 cut(s)	66
MflI	RGATCY	4 cut(s)	695, 1034, 1109, 1261
MhlI	GDGCHC	2 cut(s)	75, 533
MlyI	GAGTC	3 cut(s)	863, 1013, 1088
MmeI	TCCRAC	1 cut(s)	1180
MnlI	CCTC	9 cut(s)	121, 381, 742, 745, 1153, 1215, 1315, 1321, 1330
Mph1103I	ATGCAT	1 cut(s)	1353
MseI	TTAA	7 cut(s)	272, 564, 635, 921, 996, 1071, 1485
MspR9I	CCNGG	2 cut(s)	267, 384
MunI	CAATTG	1 cut(s)	66
MvaI	CCWGG	2 cut(s)	267, 384
NlaIII	CATG	6 cut(s)	140, 165, 899, 974, 1124, 1351
NlaIV	GGNNCC	1 cut(s)	417
NmuCI	GTSAC	5 cut(s)	319, 386, 877, 1021, 1362
NsiI	ATGCAT	1 cut(s)	1353
NspI	RCATGY	1 cut(s)	1351
PciSI	GCTCTTC	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	802
PfeI	GAWTC	6 cut(s)	29, 308, 365, 608, 755, 793
PflFI	GACNNNGTC	2 cut(s)	733, 778
PkrI	GCNGC	2 cut(s)	667, 1416
PleI	GAGTC	3 cut(s)	862, 1012, 1087
PpsI	GAGTC	3 cut(s)	862, 1012, 1087
Psp124BI	GAGCTC	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	265, 382
PspGI	CCWGG	2 cut(s)	265, 382
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	221
PsrI	GAACNNNNNNTAC	2 cut(s)	1414, 1446
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	4 cut(s)	695, 1034, 1109, 1261
PsyI	GACNNNGTC	2 cut(s)	733, 778
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	533
SapI	GCTCTTC	1 cut(s)	521
SaqAI	TTAA	7 cut(s)	272, 564, 635, 921, 996, 1071, 1485
SatI	GCNGC	2 cut(s)	666, 1415
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	3 cut(s)	863, 1013, 1088
ScrFI	CCNGG	2 cut(s)	267, 384
SduI	GDGCHC	2 cut(s)	75, 533
SfaNI	GCATC	2 cut(s)	1069, 1144
SfcI	CTRYAG	2 cut(s)	315, 669
SinI	GGWCC	1 cut(s)	221
SsiI	CCGC	1 cut(s)	397
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	3 cut(s)	179, 441, 693
SstI	GAGCTC	1 cut(s)	533
StyD4I	CCNGG	2 cut(s)	265, 382
StyI	CCWWGG	2 cut(s)	360, 1409
TaaI	ACNGT	5 cut(s)	109, 319, 1021, 1376, 1508
TaiI	ACGT	2 cut(s)	412, 808
TaqI	TCGA	7 cut(s)	117, 901, 976, 1051, 1126, 1303, 1469
TaqII	GACCGA	1 cut(s)	249
TfiI	GAWTC	6 cut(s)	29, 308, 365, 608, 755, 793
Tru1I	TTAA	7 cut(s)	272, 564, 635, 921, 996, 1071, 1485
Tru9I	TTAA	7 cut(s)	272, 564, 635, 921, 996, 1071, 1485
TscAI	CASTG	4 cut(s)	51, 324, 520, 686
TseFI	GTSAC	5 cut(s)	319, 386, 877, 1021, 1362
TseI	GCWGC	2 cut(s)	665, 1414
Tsp45I	GTSAC	5 cut(s)	319, 386, 877, 1021, 1362
TspDTI	ATGAA	9 cut(s)	17, 21, 69, 125, 435, 701, 879, 954, 1029
TspGWI	ACGGA	2 cut(s)	523, 1370
TspRI	CASTG	4 cut(s)	51, 324, 520, 686
Tth111I	GACNNNGTC	2 cut(s)	733, 778
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	4 cut(s)	215, 332, 785, 833
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	1 cut(s)	1351
XmiI	GTMKAC	1 cut(s)	314
XspI	CTAG	3 cut(s)	179, 441, 693
ZraI	GACGTC	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	1353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.