Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Forward (+)

11341428 .. 11341911

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGACTATGTTTCAAGAAAAAAAATCAACAAAGCATGATCAAAGGAAGCATCAAAGGATGTGGACTCCCTCTGAGGTGACGACATTGGTTGATGGTATTTCTCAATACGGAGTTGGACAATGGACAGACATAAAAAGAAAGTGGAGAGGGCCAGTTACGCAAGGCGCAGGCCCCCTAAATTGGGGCAGGCTCCGTGAAGGTTTCATACGCCATTTTAAGATCAGATTTCTACTGCCTTTCTCCATTTTGTGTTCTACAGGAGGACTTGAATTTCAGTTGAACAGTTGTCTTTGCGGTTTAACTTCTAACTTCACTACTTGCGCACGCTGCAGGACAATGGAGAAATATTTTAGGGAGGAGCTGCGGAAAGGAACTGAAGAACGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

130

Amino Acids

15.05

Weight (kDa)

9.85

Isoelectric Point (pI)

22.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	322
AciI	CCGC	2 cut(s)	294, 364
AcsI	RAATTY	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	180, 181
AgsI	TTSAA	3 cut(s)	14, 269, 280
AluBI	AGCT	1 cut(s)	361
AluI	AGCT	1 cut(s)	361
AoxI	GGCC	2 cut(s)	149, 169
ApeKI	GCWGC	2 cut(s)	327, 361
ApoI	RAATTY	1 cut(s)	269
AspLEI	GCGC	2 cut(s)	167, 323
AspS9I	GGNCC	2 cut(s)	149, 170
AsuHPI	GGTGA	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	189, 221
BbvI	GCAGC	2 cut(s)	314, 348
BccI	CCATC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	37
BfaI	CTAG	1 cut(s)	388
BfmI	CTRYAG	2 cut(s)	255, 328
BisI	GCNGC	2 cut(s)	328, 362
BlsI	GCNGC	2 cut(s)	329, 363
BmgT120I	GGNCC	2 cut(s)	149, 170
BmiI	GGNNCC	2 cut(s)	172, 191
BmsI	GCATC	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 181
Bse1I	ACTGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	180, 181
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	314, 348
BshFI	GGCC	2 cut(s)	151, 171
BslI	CCNNNNNNNGG	2 cut(s)	180, 181
BsnI	GGCC	2 cut(s)	151, 171
Bsp143I	GATC	2 cut(s)	37, 219
BspACI	CCGC	2 cut(s)	294, 364
BspANI	GGCC	2 cut(s)	151, 171
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	172, 191
BspMAI	CTGCAG	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	2 cut(s)	37, 219
Bst4CI	ACNGT	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	169, 188, 325
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	167, 323
BstKTI	GATC	2 cut(s)	40, 222
BstMBI	GATC	2 cut(s)	37, 219
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 327
BstSFI	CTRYAG	2 cut(s)	255, 328
BstV1I	GCAGC	2 cut(s)	314, 348
BsuRI	GGCC	2 cut(s)	151, 171
BtsCI	GGATG	1 cut(s)	63
Cac8I	GCNNGC	3 cut(s)	169, 188, 325
CfoI	GCGC	2 cut(s)	167, 323
Cfr13I	GGNCC	2 cut(s)	149, 170
CspCI	CAANNNNNGTGG	2 cut(s)	41, 76
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	5 cut(s)	151, 171, 190, 361, 387
CviKI_1	RGCY	5 cut(s)	151, 171, 190, 361, 387
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	39, 221
DpnII	GATC	2 cut(s)	37, 219
EcoO109I	RGGNCCY	1 cut(s)	170
FaeI	CATG	1 cut(s)	38
FaiI	YATR	4 cut(s)	8, 36, 131, 206
FatI	CATG	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	328, 362
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	2 cut(s)	328, 362
FspBI	CTAG	1 cut(s)	388
FspI	TGCGCA	1 cut(s)	322
GlaI	GCGC	2 cut(s)	166, 322
GluI	GCNGC	2 cut(s)	328, 362
HaeIII	GGCC	2 cut(s)	151, 171
HhaI	GCGC	2 cut(s)	167, 323
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	2 cut(s)	165, 321
HinP1I	GCGC	2 cut(s)	165, 321
HinfI	GANTC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	73, 224
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 327
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	2 cut(s)	165, 321
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	37, 219
LmnI	GCTCC	2 cut(s)	195, 358
LpnPI	CCDG	5 cut(s)	153, 165, 172, 243, 316
Lsp1109I	GCAGC	2 cut(s)	314, 348
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	76, 154
MalI	GATC	2 cut(s)	39, 221
MboI	GATC	2 cut(s)	37, 219
MboII	GAAGA	1 cut(s)	389
MluCI	AATT	2 cut(s)	178, 269
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	6 cut(s)	67, 79, 140, 254, 349, 377
MseI	TTAA	2 cut(s)	216, 299
MwoI	GCNNNNNNNGC	2 cut(s)	157, 327
NdeII	GATC	2 cut(s)	37, 219
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	2 cut(s)	172, 191
NmuCI	GTSAC	1 cut(s)	76
NsbI	TGCGCA	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	329, 363
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	172, 191
PspPI	GGNCC	2 cut(s)	149, 170
PstI	CTGCAG	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	216, 299
SatI	GCNGC	2 cut(s)	328, 362
Sau3AI	GATC	2 cut(s)	37, 219
Sau96I	GGNCC	2 cut(s)	149, 170
SchI	GAGTC	1 cut(s)	58
SetI	ASST	3 cut(s)	78, 202, 363
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	2 cut(s)	255, 328
Sse9I	AATT	2 cut(s)	178, 269
SsiI	CCGC	2 cut(s)	294, 364
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	284
TasI	AATT	2 cut(s)	178, 269
Tru1I	TTAA	2 cut(s)	216, 299
Tru9I	TTAA	2 cut(s)	216, 299
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	327, 361
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	193
TspGWI	ACGGA	2 cut(s)	123, 182
XapI	RAATTY	1 cut(s)	269
XspI	CTAG	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.