Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Forward (+)

23610641 .. 23616144

Gene Structure 5504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G234700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGGATCATGAAGCACACTCGCGTAACAAGTTCGTCAACATGAAATCCCAAAGGGTGAAAGTAGAAGGTTCTTTTGCTCCTGCATTAGAAGATGAAACTGAAACCATTGAGCATTTACTAGCAGAACCTAAAAGTGAATATGTTACGGTAGATGGTGTCTTATGCTGTGGCAAGGAGAATGCAGGAAAGTGCATGGACATTGAAGATTTTTCCTGTGGATATGACTTTGGGCTTAATACATACAGTGGTGGATTGCATTCTGCTCATCCTCGTGGAAGATACGATGAATTAGAATTTGGAGTTCTTGACGGATTGTTGGACGAAGTTGATGAAGTGGAGGATATTCATGCAATAAATGGTCTTGCAAGCCCCTGTGATGATTATCTTTTAGATATTGGATTTACAGGAAAAGCTTCTGAACTGGGTTTTGGTCCTTGTGAAAAATCACATCTGGGAAACTCAAGTTCTGAAAGTCAGTCTCCACGATTAAGTGGCAGTAGTAACGGTGCTGTTGGGATATCCGAATCGTCAACTGTGACTATTCAAGAATTTGAATGCAAGAATAATTCTATTGACAAGGCAGTAACTCATGAATTTCATGGTGGGTTCAGGAGGAAAAAAAGACATCGAACACCTGTTGAAGGCAATGTCTATCCTGCTTCAATCAATTTACAAAATCTTGAGTTAGATAATGATGAAAAGTCTTTAGTAAGGGAAATAGTGTCTGGTGAAAATGAGAAGCTCTCTGTTGAAGCAACCAAACTTGGTGCTTTTTGTAAGGAAAAAAGACTGCGTAAGCCTACTTTGAGATATATTGAGGAATTTTCAGGTAAGAAGTCAAAAGATTCCAACGAGAGGGAAAATTGTTCTGCTGTTACTGCTACGCAGGATCGCTCAAAGGTCAGATGTCAGAATGAACATCATCATATGAGTCCTGGGATATTGTCATCAGTGCCTGAGGAGGATTCAATTTCAGAAAACCAGACACTGGCTGAATTTAGGACTCAAAGAAAACTTGCAAAGAAGCATGCATCAATTTTGGCGCTTGAGTCTGATGAGCAACCTATTACATCTGAGTCTGAAGATGACCATGTACCAAAAAAAAGATCTAGAAAGCATGATCGAAGGAAGCATCAAAGGATGTGGACGCTCTCTGAGGTGACGACATTGGTTGATGGTATTTCTGAATATGGAGTTGGACGATGGACAGATATTAAGAGGGTCCTATTTTCGTCTTCTGCTTATCGCACGCCAATAGATCTCAGGGACAAATGGAGAAATCTTTTAAGAGCTAGCTGTGGAAAGAAAATGAAGAAAGAGGTTGAGCAAAAGGAGATGCGAGCTTTACCAAAGTCTTTGGTACGCCGTGTCCGTGAGCTGGCGATGGTACACCCCTATCCTAGGCAGCGTGGCAAGAAGTTTGCCCCTCCCATACTTCCTACTCCCAGTAAAAGTGCTTCATCTGACCTAATCAGAAAGTATGTCCGAAGGAAGAATCGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

502

Amino Acids

56.51

Weight (kDa)

8.17

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	988
AccII	CGCG	1 cut(s)	22
AclWI	GGATC	2 cut(s)	12, 897
AcsI	RAATTY	5 cut(s)	293, 548, 593, 821, 995
AcuI	CTGAAG	1 cut(s)	1101
AfaI	GTAC	3 cut(s)	1095, 1362, 1389
AfiI	CCNNNNNNNGG	5 cut(s)	641, 855, 988, 1378, 1401
AgsI	TTSAA	7 cut(s)	203, 545, 554, 641, 663, 752, 969
AjnI	CCWGG	1 cut(s)	934
AjuI	GAANNNNNNNTTGG	6 cut(s)	279, 311, 411, 443, 1179, 1211
AluBI	AGCT	6 cut(s)	413, 742, 1292, 1296, 1343, 1378
AluI	AGCT	6 cut(s)	413, 742, 1292, 1296, 1343, 1378
Alw26I	GTCTC	1 cut(s)	483
AlwI	GGATC	2 cut(s)	12, 897
AlwNI	CAGNNNCTG	2 cut(s)	956, 988
ApeKI	GCWGC	1 cut(s)	1405
ApoI	RAATTY	5 cut(s)	293, 548, 593, 821, 995
Asp700I	GAANNNNTTC	1 cut(s)	412
AspA2I	CCTAGG	1 cut(s)	1400
AspLEI	GCGC	1 cut(s)	1045
AspS9I	GGNCC	2 cut(s)	431, 1222
AsuHPI	GGTGA	3 cut(s)	67, 740, 1171
AsuNHI	GCTAGC	1 cut(s)	1292
AvaII	GGWCC	2 cut(s)	431, 1222
AvrII	CCTAGG	1 cut(s)	1400
AxyI	CCTNAGG	1 cut(s)	957
BarI	GAAGNNNNNNTAC	2 cut(s)	1441, 1473
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	1227
BbvI	GCAGC	1 cut(s)	1417
BccI	CCATC	4 cut(s)	146, 1169, 1197, 1378
BceAI	ACGGC	1 cut(s)	1350
BciT130I	CCWGG	1 cut(s)	936
BcoDI	GTCTC	1 cut(s)	483
BfaI	CTAG	4 cut(s)	119, 1110, 1293, 1401
BfoI	RGCGCY	1 cut(s)	1046
BglII	AGATCT	2 cut(s)	1106, 1258
BisI	GCNGC	1 cut(s)	1406
BlnI	CCTAGG	1 cut(s)	1400
BlsI	GCNGC	1 cut(s)	1407
Bme1390I	CCNGG	1 cut(s)	936
Bme18I	GGWCC	2 cut(s)	431, 1222
BmgT120I	GGNCC	2 cut(s)	431, 1222
BmiI	GGNNCC	1 cut(s)	1223
BmrFI	CCNGG	1 cut(s)	936
BmrI	ACTGGG	2 cut(s)	431, 1440
BmsI	GCATC	3 cut(s)	1040, 1141, 1326
BmtI	GCTAGC	1 cut(s)	1296
BmuI	ACTGGG	2 cut(s)	431, 1440
BpiI	GAAGAC	1 cut(s)	1227
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpuEI	CTTGAG	3 cut(s)	445, 701, 1067
Bsa29I	ATCGAT	1 cut(s)	1498
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	935, 1400
Bsc4I	CCNNNNNNNGG	5 cut(s)	641, 855, 988, 1378, 1401
Bse1I	ACTGG	3 cut(s)	426, 993, 1446
Bse21I	CCTNAGG	1 cut(s)	957
Bse3DI	GCAATG	1 cut(s)	652
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	936
BseCI	ATCGAT	1 cut(s)	1498
BseDI	CCNNGG	2 cut(s)	935, 1400
BseGI	GGATG	2 cut(s)	265, 1146
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	5 cut(s)	641, 855, 988, 1378, 1401
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	4 cut(s)	948, 1065, 1146, 1276
BseNI	ACTGG	3 cut(s)	426, 993, 1446
BseRI	GAGGAG	1 cut(s)	974
BseXI	GCAGC	1 cut(s)	1417
Bsh1236I	CGCG	1 cut(s)	22
BshVI	ATCGAT	1 cut(s)	1498
BslFI	GGGAC	1 cut(s)	1280
BslI	CCNNNNNNNGG	5 cut(s)	641, 855, 988, 1378, 1401
BsmAI	GTCTC	1 cut(s)	483
BsmFI	GGGAC	1 cut(s)	1280
BsmI	GAATGC	3 cut(s)	184, 256, 560
Bsp143I	GATC	6 cut(s)	4, 889, 1106, 1120, 1258, 1499
BspCNI	CTCAG	4 cut(s)	949, 1066, 1147, 1275
BspDI	ATCGAT	1 cut(s)	1498
BspFNI	CGCG	1 cut(s)	22
BspHI	TCATGA	2 cut(s)	7, 589
BspLI	GGNNCC	1 cut(s)	1223
BspOI	GCTAGC	1 cut(s)	1296
BspPI	GGATC	2 cut(s)	12, 897
BsrDI	GCAATG	1 cut(s)	652
BsrI	ACTGG	3 cut(s)	426, 993, 1446
BssECI	CCNNGG	2 cut(s)	935, 1400
BssMI	GATC	6 cut(s)	4, 889, 1106, 1120, 1258, 1499
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	1400
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	4 cut(s)	148, 245, 506, 535
BstC8I	GCNNGC	6 cut(s)	367, 1029, 1250, 1294, 1341, 1380
BstDEI	CTNAG	4 cut(s)	957, 1074, 1155, 1262
BstENI	CCTNNNNNAGG	2 cut(s)	639, 1399
BstF5I	GGATG	2 cut(s)	265, 1146
BstFNI	CGCG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	1046
BstHHI	GCGC	1 cut(s)	1045
BstKTI	GATC	6 cut(s)	7, 892, 1109, 1123, 1261, 1502
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	6 cut(s)	4, 889, 1106, 1120, 1258, 1499
BstMWI	GCNNNNNNNGC	1 cut(s)	878
BstNI	CCWGG	1 cut(s)	936
BstNSI	RCATGY	1 cut(s)	1031
BstSCI	CCNGG	1 cut(s)	934
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	1417
BstV2I	GAAGAC	1 cut(s)	1227
BstX2I	RGATCY	2 cut(s)	1106, 1258
BstYI	RGATCY	2 cut(s)	1106, 1258
Bsu15I	ATCGAT	1 cut(s)	1498
Bsu36I	CCTNAGG	1 cut(s)	957
BsuTUI	ATCGAT	1 cut(s)	1498
BtgZI	GCGATG	1 cut(s)	1397
BtsCI	GGATG	2 cut(s)	265, 1146
BtsIMutI	CAGTG	3 cut(s)	250, 957, 986
Cac8I	GCNNGC	6 cut(s)	367, 1029, 1250, 1294, 1341, 1380
CaiI	CAGNNNCTG	2 cut(s)	956, 988
CciI	TCATGA	2 cut(s)	7, 589
CfoI	GCGC	1 cut(s)	1045
Cfr13I	GGNCC	2 cut(s)	431, 1222
ClaI	ATCGAT	1 cut(s)	1498
CseI	GACGC	1 cut(s)	1156
Csp6I	GTAC	3 cut(s)	1094, 1361, 1388
CspCI	CAANNNNNGTGG	2 cut(s)	1124, 1159
CviAII	CATG	9 cut(s)	8, 40, 193, 347, 590, 599, 1028, 1091, 1118
CviQI	GTAC	3 cut(s)	1094, 1361, 1388
DdeI	CTNAG	4 cut(s)	957, 1074, 1155, 1262
DpnI	GATC	6 cut(s)	6, 891, 1108, 1122, 1260, 1501
DpnII	GATC	6 cut(s)	4, 889, 1106, 1120, 1258, 1499
Eco130I	CCWWGG	1 cut(s)	1400
Eco32I	GATATC	1 cut(s)	519
Eco47I	GGWCC	2 cut(s)	431, 1222
Eco57I	CTGAAG	1 cut(s)	1101
Eco81I	CCTNAGG	1 cut(s)	957
EcoNI	CCTNNNNNAGG	2 cut(s)	639, 1399
EcoO109I	RGGNCCY	1 cut(s)	1222
EcoRII	CCWGG	1 cut(s)	934
EcoRV	GATATC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	1400
EcoT22I	ATGCAT	1 cut(s)	1033
ErhI	CCWWGG	1 cut(s)	1400
FaeI	CATG	9 cut(s)	11, 43, 196, 350, 593, 602, 1031, 1094, 1121
FaqI	GGGAC	1 cut(s)	1280
FatI	CATG	9 cut(s)	7, 39, 192, 346, 589, 598, 1027, 1090, 1117
FauNDI	CATATG	1 cut(s)	927
Fnu4HI	GCNGC	1 cut(s)	1406
FokI	GGATG	2 cut(s)	252, 1153
Fsp4HI	GCNGC	1 cut(s)	1406
FspBI	CTAG	4 cut(s)	119, 1110, 1293, 1401
GlaI	GCGC	1 cut(s)	1044
GluI	GCNGC	1 cut(s)	1406
HaeII	RGCGCY	1 cut(s)	1046
HgaI	GACGC	1 cut(s)	1156
HhaI	GCGC	1 cut(s)	1045
Hin1II	CATG	9 cut(s)	11, 43, 196, 350, 593, 602, 1031, 1094, 1121
Hin6I	GCGC	1 cut(s)	1043
HinP1I	GCGC	1 cut(s)	1043
HincII	GTYRAC	2 cut(s)	37, 531
HindII	GTYRAC	2 cut(s)	37, 531
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	8 cut(s)	524, 845, 931, 965, 1003, 1049, 1076, 1495
HphI	GGTGA	3 cut(s)	67, 740, 1171
Hpy166II	GTNNAC	4 cut(s)	37, 531, 1146, 1390
Hpy188III	TCNNGA	8 cut(s)	8, 305, 545, 590, 610, 680, 1110, 1503
Hpy8I	GTNNAC	4 cut(s)	37, 531, 1146, 1390
HpyAV	CCTTC	4 cut(s)	59, 635, 1119, 1482
HpyCH4III	ACNGT	4 cut(s)	148, 245, 506, 535
HpyCH4V	TGCA	9 cut(s)	83, 182, 192, 256, 350, 365, 558, 1019, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	878
HpyF3I	CTNAG	4 cut(s)	957, 1074, 1155, 1262
Hsp92II	CATG	9 cut(s)	11, 43, 196, 350, 593, 602, 1031, 1094, 1121
HspAI	GCGC	1 cut(s)	1043
Kzo9I	GATC	6 cut(s)	4, 889, 1106, 1120, 1258, 1499
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	1417
LweI	GCATC	3 cut(s)	1040, 1141, 1326
MaeI	CTAG	4 cut(s)	119, 1110, 1293, 1401
MaeIII	GTNAC	7 cut(s)	23, 142, 500, 535, 583, 874, 1159
MalI	GATC	6 cut(s)	6, 891, 1108, 1122, 1260, 1501
MboI	GATC	6 cut(s)	4, 889, 1106, 1120, 1258, 1499
MboII	GAAGA	7 cut(s)	101, 215, 288, 1094, 1227, 1324, 1504
MflI	RGATCY	2 cut(s)	1106, 1258
MlyI	GAGTC	4 cut(s)	940, 997, 1058, 1085
MmeI	TCCRAC	3 cut(s)	297, 873, 1177
Mph1103I	ATGCAT	1 cut(s)	1033
MroXI	GAANNNNTTC	1 cut(s)	412
MseI	TTAA	4 cut(s)	234, 488, 1215, 1286
MslI	CAYNNNNRTG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	936
Mva1269I	GAATGC	3 cut(s)	184, 256, 560
MvaI	CCWGG	1 cut(s)	936
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	878
NdeI	CATATG	1 cut(s)	927
NdeII	GATC	6 cut(s)	4, 889, 1106, 1120, 1258, 1499
NheI	GCTAGC	1 cut(s)	1292
NlaIII	CATG	9 cut(s)	11, 43, 196, 350, 593, 602, 1031, 1094, 1121
NlaIV	GGNNCC	1 cut(s)	1223
NmuCI	GTSAC	2 cut(s)	535, 1159
NsiI	ATGCAT	1 cut(s)	1033
NspI	RCATGY	1 cut(s)	1031
PaeI	GCATGC	1 cut(s)	1031
PagI	TCATGA	2 cut(s)	7, 589
PcsI	WCGNNNNNNNCGW	1 cut(s)	1369
PctI	GAATGC	3 cut(s)	184, 256, 560
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	4 cut(s)	524, 845, 965, 1495
PflMI	CCANNNNNTGG	1 cut(s)	988
PkrI	GCNGC	1 cut(s)	1407
PleI	GAGTC	4 cut(s)	939, 997, 1057, 1084
PpsI	GAGTC	4 cut(s)	939, 997, 1057, 1084
PpuMI	RGGWCCY	1 cut(s)	1222
Psp5II	RGGWCCY	1 cut(s)	1222
Psp6I	CCWGG	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	934
PspN4I	GGNNCC	1 cut(s)	1223
PspPI	GGNCC	2 cut(s)	431, 1222
PspPPI	RGGWCCY	1 cut(s)	1222
PstNI	CAGNNNCTG	2 cut(s)	956, 988
PsuI	RGATCY	2 cut(s)	1106, 1258
RsaI	GTAC	3 cut(s)	1095, 1362, 1389
RsaNI	GTAC	3 cut(s)	1094, 1361, 1388
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	4 cut(s)	234, 488, 1215, 1286
SatI	GCNGC	1 cut(s)	1406
Sau3AI	GATC	6 cut(s)	4, 889, 1106, 1120, 1258, 1499
Sau96I	GGNCC	2 cut(s)	431, 1222
SchI	GAGTC	4 cut(s)	940, 997, 1058, 1085
ScrFI	CCNGG	1 cut(s)	936
SfaNI	GCATC	3 cut(s)	1040, 1141, 1326
SinI	GGWCC	2 cut(s)	431, 1222
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	3 cut(s)	460, 680, 1046
SmoI	CTYRAG	3 cut(s)	460, 680, 1046
SphI	GCATGC	1 cut(s)	1031
SspMI	CTAG	4 cut(s)	119, 1110, 1293, 1401
StyD4I	CCNGG	1 cut(s)	934
StyI	CCWWGG	1 cut(s)	1400
TaaI	ACNGT	4 cut(s)	148, 245, 506, 535
TaqI	TCGA	3 cut(s)	628, 1123, 1498
TfiI	GAWTC	4 cut(s)	524, 845, 965, 1495
Tru1I	TTAA	4 cut(s)	234, 488, 1215, 1286
Tru9I	TTAA	4 cut(s)	234, 488, 1215, 1286
TscAI	CASTG	3 cut(s)	250, 957, 993
TseFI	GTSAC	2 cut(s)	535, 1159
TseI	GCWGC	1 cut(s)	1405
Tsp45I	GTSAC	2 cut(s)	535, 1159
TspGWI	ACGGA	2 cut(s)	324, 1361
TspRI	CASTG	3 cut(s)	250, 957, 993
Van91I	CCANNNNNTGG	1 cut(s)	988
VpaK11BI	GGWCC	2 cut(s)	431, 1222
XagI	CCTNNNNNAGG	2 cut(s)	639, 1399
XapI	RAATTY	5 cut(s)	293, 548, 593, 821, 995
XbaI	TCTAGA	1 cut(s)	1109
XceI	RCATGY	1 cut(s)	1031
XmaJI	CCTAGG	1 cut(s)	1400
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	4 cut(s)	119, 1110, 1293, 1401
Zsp2I	ATGCAT	1 cut(s)	1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.