Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Forward (+)

17621041 .. 17623016

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1095700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTATTTTGGTTTCATTTTTCCAGATAAATTTTGGAATCGCGTTCTTGACGGATTGCTGGATGAAGTTGATGAAGTGGAGGATATACATGCAATAAATGATATTGGATTTATAGGACAAGCTTCTGAACTGGGTTTTGGTTCTTGTGAAGGATCACGTAAAAGAAACTCATGTTCTGCAAATCAGTCTCCAGGATTAAGTGGTAGTGGTAACAGTGCTGTTGGGATATCTGAATCAACTGTGACCATTCAAGAATTTGAGTGCAAGAATAATTCTATTGACAAGGCTGAGAAAAGACTACATAAGCCTACTCGAAGATACATTGAGGAATTTCCGGACAAGATGTCAAAAGATTCCAAGGGGAGGGAAGATTGTTCTGCTGTTACTACTACAGAGAGTCGACGCTCGAAGGTCAGATCACAGAATAAACATCATCATCTGAGGCCTAGGACATTGGCATCAGTCCCTGAGGATGATTTAATTTTGAAAAGCAGACACTGGCTGAATTCAGGAAGCAAAGAGCATGTCGAAAGAAGTATGCATCAATTTCGTCGGGAAAGAAGAATAAGGGAGAGAGAGGGAGGGAGTTTGGGGGTGTGGTGGAGAGATCTGGGGAACAATTACTTGGGATTCTTCTGCAGGGGAAGAAGAAGAGGGAGAGAGAGGGAGGGAGTTTGGGGGGGGGGGTGCAGAGAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

234

Amino Acids

26.72

Weight (kDa)

9.08

Isoelectric Point (pI)

67.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	400
AccII	CGCG	1 cut(s)	42
AccIII	TCCGGA	1 cut(s)	334
AclWI	GGATC	1 cut(s)	160
AcsI	RAATTY	4 cut(s)	29, 254, 329, 505
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	2 cut(s)	251, 487
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	190
AjuI	GAANNNNNNNTTGG	4 cut(s)	120, 152, 608, 640
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	160
AlwNI	CAGNNNCTG	2 cut(s)	467, 498
Aor13HI	TCCGGA	1 cut(s)	334
AoxI	GGCC	1 cut(s)	443
ApoI	RAATTY	4 cut(s)	29, 254, 329, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	510, 542
AspA2I	CCTAGG	1 cut(s)	446
AvrII	CCTAGG	1 cut(s)	446
AxyI	CCTNAGG	1 cut(s)	468
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	2 cut(s)	447, 700
BfmI	CTRYAG	2 cut(s)	390, 637
BglII	AGATCT	2 cut(s)	607, 696
BlnI	CCTAGG	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	192
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	467, 550
BmuI	ACTGGG	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	357, 446
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	2 cut(s)	135, 503
Bse21I	CCTNAGG	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	357, 446
BseGI	GGATG	2 cut(s)	67, 478
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMII	CTCAG	3 cut(s)	279, 431, 459
BseNI	ACTGG	2 cut(s)	135, 503
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	445
Bsp13I	TCCGGA	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	152, 416, 607, 696
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	3 cut(s)	280, 432, 460
BspEI	TCCGGA	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	641
BspPI	GGATC	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	135, 503
BssECI	CCNNGG	2 cut(s)	357, 446
BssMI	GATC	4 cut(s)	152, 416, 607, 696
BssT1I	CCWWGG	2 cut(s)	357, 446
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	215, 241
Bst6I	CTCTTC	1 cut(s)	646
BstBAI	YACGTR	1 cut(s)	158
BstDEI	CTNAG	3 cut(s)	288, 440, 468
BstF5I	GGATG	2 cut(s)	67, 478
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	4 cut(s)	155, 419, 610, 699
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	4 cut(s)	152, 416, 607, 696
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	2 cut(s)	92, 527
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	2 cut(s)	390, 637
BstUI	CGCG	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	607, 696
BstYI	RGATCY	2 cut(s)	607, 696
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	67, 478
BtsIMutI	CAGTG	2 cut(s)	220, 496
CaiI	CAGNNNCTG	2 cut(s)	467, 498
CseI	GACGC	1 cut(s)	411
CviAII	CATG	3 cut(s)	89, 171, 524
CviJI	RGCY	5 cut(s)	122, 287, 307, 445, 502
CviKI_1	RGCY	5 cut(s)	122, 287, 307, 445, 502
DdeI	CTNAG	3 cut(s)	288, 440, 468
DpnI	GATC	4 cut(s)	154, 418, 609, 698
DpnII	GATC	4 cut(s)	152, 416, 607, 696
DriI	GACNNNNNGTC	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	646
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	646
Eco130I	CCWWGG	2 cut(s)	357, 446
Eco147I	AGGCCT	1 cut(s)	445
Eco32I	GATATC	1 cut(s)	228
Eco81I	CCTNAGG	1 cut(s)	468
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	190
EcoRV	GATATC	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	357, 446
EcoT22I	ATGCAT	1 cut(s)	543
ErhI	CCWWGG	2 cut(s)	357, 446
FaeI	CATG	3 cut(s)	92, 174, 527
FaiI	YATR	7 cut(s)	86, 90, 113, 172, 303, 525, 539
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	3 cut(s)	88, 170, 523
FblI	GTMKAC	1 cut(s)	400
FokI	GGATG	2 cut(s)	74, 485
FspBI	CTAG	2 cut(s)	447, 700
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	411
Hin1II	CATG	3 cut(s)	92, 174, 527
HincII	GTYRAC	1 cut(s)	401
HindII	GTYRAC	1 cut(s)	401
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	5 cut(s)	37, 233, 353, 397, 630
HpaII	CCGG	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	4 cut(s)	127, 232, 416, 441
Hpy188III	TCNNGA	6 cut(s)	23, 47, 251, 335, 510, 554
Hpy8I	GTNNAC	1 cut(s)	401
Hpy99I	CGWCG	2 cut(s)	405, 555
HpyAV	CCTTC	2 cut(s)	143, 403
HpyCH4III	ACNGT	2 cut(s)	215, 241
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	6 cut(s)	92, 179, 264, 541, 639, 690
HpyF3I	CTNAG	3 cut(s)	288, 440, 468
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	92, 174, 527
Kpn2I	TCCGGA	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	152, 416, 607, 696
LweI	GCATC	2 cut(s)	467, 550
MaeI	CTAG	2 cut(s)	447, 700
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	3 cut(s)	209, 241, 382
MalI	GATC	4 cut(s)	154, 418, 609, 698
MboI	GATC	4 cut(s)	152, 416, 607, 696
MboII	GAAGA	7 cut(s)	327, 380, 573, 625, 657, 660, 663
MflI	RGATCY	2 cut(s)	607, 696
MluCI	AATT	8 cut(s)	29, 254, 271, 329, 480, 505, 545, 619
MlyI	GAGTC	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	543
MroI	TCCGGA	1 cut(s)	334
MseI	TTAA	2 cut(s)	197, 479
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	42
NdeII	GATC	4 cut(s)	152, 416, 607, 696
NlaIII	CATG	3 cut(s)	92, 174, 527
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	543
NspI	RCATGY	2 cut(s)	92, 527
PceI	AGGCCT	1 cut(s)	445
PfeI	GAWTC	4 cut(s)	37, 233, 353, 630
PfoI	TCCNGGA	1 cut(s)	190
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
Ppu21I	YACGTR	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	641
PstNI	CAGNNNCTG	2 cut(s)	467, 498
PsuI	RGATCY	2 cut(s)	607, 696
SalI	GTCGAC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	197, 479
Sau3AI	GATC	4 cut(s)	152, 416, 607, 696
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	3 cut(s)	124, 160, 414
SfaNI	GCATC	2 cut(s)	467, 550
SfcI	CTRYAG	2 cut(s)	390, 637
Sse9I	AATT	8 cut(s)	29, 254, 271, 329, 480, 505, 545, 619
SseBI	AGGCCT	1 cut(s)	445
SspMI	CTAG	2 cut(s)	447, 700
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	2 cut(s)	357, 446
TaaI	ACNGT	2 cut(s)	215, 241
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	4 cut(s)	313, 400, 407, 528
TasI	AATT	8 cut(s)	29, 254, 271, 329, 480, 505, 545, 619
TfiI	GAWTC	4 cut(s)	37, 233, 353, 630
Tru1I	TTAA	2 cut(s)	197, 479
Tru9I	TTAA	2 cut(s)	197, 479
TscAI	CASTG	2 cut(s)	220, 503
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	4, 78, 87
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	220, 503
XapI	RAATTY	4 cut(s)	29, 254, 329, 505
XceI	RCATGY	2 cut(s)	92, 527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XmaJI	CCTAGG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	400
XspI	CTAG	2 cut(s)	447, 700
Zsp2I	ATGCAT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.