Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Forward (+)

18437076 .. 18441911

Gene Structure 4836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1115600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGATCATGAAGCACATGCACGTAAGAAGTTCGTCAACATGAAATCCCAAAGGGTGAAAGTGGAAGATTCTTTTGGTCCTGCATTAGAAGATGAATCCGAAACTATTGAACATTTACTAGCGGAACCTAAAACTGAATATGTTACGGTAGATGGTGTCTTATGCTTTGACAAGGAGAATGCAGAAAAAGGCTTGAACATGGAAGATTTTTCCTGTGGATATGACTTTGGTCTTAATACATACAGTGGTGAGTTTCGCTCTGCTCATCCTCGGGGAAGACACGATGAATTAGAACTTGGAGTTCTTGATGGATTGCTGGATGAAGTTGACGAAGTGGAGGATATAGATGCAATAAATGGCCTTGCAAGCCCGTGCGATGATTATCTTCTAGATATTGGATTTATAGGACAAGCTTCTCAACTGGGTTTTGGTCCTTGTGAAGGATCACGTTTAAGGAACTCAAGTTCTGCAAGTCAGTCACCGGGATTAAGTGGTAGTAGTAACAGTGCTGTTGGGATATCTGAATCGTCAACTGTGACTATTCAGGAATTTGAATGCAAGAATAGTTCTATTGACAAGGCAGTAACTCATGGGTTCCATGGTAACTTCAGGCAGAAGAAAAGACATCGAACACCAATTGCCCATCCTGCTTCAATCAATTTACGAAATCTTGACGAGTTAGATAACGATGAAAAACCTTCAGTAAGTGGAATAGTGTCTGCTGCTTTTCTTAAGGAGAAAAGACTACGTAAGCCTACTCGAAGATACATTGAGGAATTTTCGGGCAAGAAGTCAAAAGATTCCAAGGGGAGGGAAGATTGTTCTGCTGTTACTGCTACAGAGAATGGACGATTGAAGGCCAGATCTCAGAATAAACATCATCATCAGAGGCCGAGGACATTGGCAGCAGTTCCCGAGGATGATTTAATTTCTGAAAACCAGACACTGGCTGAATTCAGGAAGCAAAGAACACGTCGAAAGAAGTATGCATCAATTTCGATGCTTGAGTCAGATGAATCTGATGAGTCATACGAGTCCGATGAGCAACCTATAACATCTGAATCTGAAGATGACTCTGTGTCAAGGAAAAGATCAACAAAGCAAGATCGAAGGAAGCATCAAAGGATGTGGACTCCCTCTGAGGTGACGACATTGGTTGATGGTATTTCTCAATACGGAGTTGGACGATGGACAGATATAAAAAGGCTCCTATTTGCATCTTCTCCTTATCGCACGCCACTAGATCTCAGGGACAAATGGAGAAATATTTTAAGGAGGAGCTGTGGAAAGGAGCTGAAGAACGAGGCTAGATTTCTATCTGTTTATACTTTTGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

447

Amino Acids

50.37

Weight (kDa)

6.07

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	376 - 424	7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	946
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	12, 451
AcsI	RAATTY	3 cut(s)	548, 776, 953
AcuI	CTGAAG	4 cut(s)	592, 684, 1086, 1316
AfiI	CCNNNNNNNGG	3 cut(s)	440, 810, 946
AflII	CTTAAG	1 cut(s)	731
AflIII	ACRYGT	1 cut(s)	971
AgsI	TTSAA	5 cut(s)	110, 196, 554, 654, 856
AhdI	GACNNNNNGTC	1 cut(s)	1078
AjiI	CACGTC	1 cut(s)	974
AjuI	GAANNNNNNNTTGG	4 cut(s)	57, 89, 279, 311
AloI	GAACNNNNNNTCC	2 cut(s)	448, 480
AluBI	AGCT	3 cut(s)	413, 1281, 1294
AluI	AGCT	3 cut(s)	413, 1281, 1294
AlwI	GGATC	2 cut(s)	12, 451
AlwNI	CAGNNNCTG	1 cut(s)	946
Ama87I	CYCGRG	2 cut(s)	270, 914
AoxI	GGCC	3 cut(s)	358, 858, 890
ApeKI	GCWGC	2 cut(s)	722, 905
ApoI	RAATTY	3 cut(s)	548, 776, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	958, 990
AspS9I	GGNCC	2 cut(s)	77, 431
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	4 cut(s)	67, 260, 471, 1156
AvaI	CYCGRG	2 cut(s)	270, 914
AvaII	GGWCC	2 cut(s)	77, 431
BbsI	GAAGAC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	709, 917
BccI	CCATC	5 cut(s)	146, 302, 651, 1154, 1182
BcgI	CGANNNNNNTGC	2 cut(s)	978, 1012
BcnI	CCSGG	1 cut(s)	483
BfaI	CTAG	4 cut(s)	119, 389, 1241, 1308
BfmI	CTRYAG	1 cut(s)	837
BfrI	CTTAAG	1 cut(s)	731
BglII	AGATCT	2 cut(s)	863, 1243
BisI	GCNGC	2 cut(s)	723, 906
BlsI	GCNGC	2 cut(s)	724, 907
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	2 cut(s)	77, 431
BmeRI	GACNNNNNGTC	1 cut(s)	1078
BmeT110I	CYCGRG	2 cut(s)	270, 914
BmgBI	CACGTC	1 cut(s)	974
BmgT120I	GGNCC	2 cut(s)	77, 431
BmiI	GGNNCC	3 cut(s)	126, 596, 1208
BmrFI	CCNGG	1 cut(s)	483
BmrI	ACTGGG	1 cut(s)	431
BmsI	GCATC	5 cut(s)	337, 990, 998, 1126, 1226
BmuI	ACTGGG	1 cut(s)	431
BoxI	GACNNNNGTC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpuEI	CTTGAG	2 cut(s)	445, 1025
BpuMI	CCSGG	1 cut(s)	483
BsaAI	YACGTR	2 cut(s)	23, 749
BsaBI	GATNNNNATC	2 cut(s)	381, 1315
BsaJI	CCNNGG	5 cut(s)	269, 598, 804, 893, 915
BsaXI	ACNNNNNCTCC	2 cut(s)	1267, 1297
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 810, 946
Bse1I	ACTGG	2 cut(s)	426, 951
Bse8I	GATNNNNATC	2 cut(s)	381, 1315
BseDI	CCNNGG	5 cut(s)	269, 598, 804, 893, 915
BseGI	GGATG	5 cut(s)	265, 325, 643, 925, 1131
BseJI	GATNNNNATC	2 cut(s)	381, 1315
BseLI	CCNNNNNNNGG	3 cut(s)	440, 810, 946
BseMII	CTCAG	3 cut(s)	881, 1131, 1261
BseNI	ACTGG	2 cut(s)	426, 951
BseRI	GAGGAG	1 cut(s)	1291
BseXI	GCAGC	2 cut(s)	709, 917
BshFI	GGCC	3 cut(s)	360, 860, 892
BsiHKCI	CYCGRG	2 cut(s)	270, 914
BsiSI	CCGG	1 cut(s)	482
BslFI	GGGAC	1 cut(s)	1265
BslI	CCNNNNNNNGG	3 cut(s)	440, 810, 946
BsmFI	GGGAC	1 cut(s)	1265
BsmI	GAATGC	2 cut(s)	184, 560
BsnI	GGCC	3 cut(s)	360, 860, 892
BsoBI	CYCGRG	2 cut(s)	270, 914
Bsp143I	GATC	6 cut(s)	4, 443, 863, 1091, 1105, 1243
Bsp19I	CCATGG	1 cut(s)	598
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	3 cut(s)	360, 860, 892
BspCNI	CTCAG	3 cut(s)	880, 1132, 1260
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	126, 596, 1208
BspPI	GGATC	2 cut(s)	12, 451
BspTI	CTTAAG	1 cut(s)	731
BsrI	ACTGG	2 cut(s)	426, 951
BssECI	CCNNGG	5 cut(s)	269, 598, 804, 893, 915
BssMI	GATC	6 cut(s)	4, 443, 863, 1091, 1105, 1243
BssT1I	CCWWGG	2 cut(s)	598, 804
Bst4CI	ACNGT	4 cut(s)	148, 245, 506, 535
BstAFI	CTTAAG	1 cut(s)	731
BstBAI	YACGTR	2 cut(s)	23, 749
BstC8I	GCNNGC	2 cut(s)	367, 1235
BstDEI	CTNAG	3 cut(s)	867, 1140, 1247
BstDSI	CCRYGG	1 cut(s)	598
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstF5I	GGATG	5 cut(s)	265, 325, 643, 925, 1131
BstKTI	GATC	6 cut(s)	7, 446, 866, 1094, 1108, 1246
BstMBI	GATC	6 cut(s)	4, 443, 863, 1091, 1105, 1243
BstMWI	GCNNNNNNNGC	3 cut(s)	366, 647, 833
BstNSI	RCATGY	1 cut(s)	20
BstPAI	GACNNNNGTC	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	837
BstSNI	TACGTA	1 cut(s)	749
BstV1I	GCAGC	2 cut(s)	709, 917
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	863, 1243
BstYI	RGATCY	2 cut(s)	863, 1243
BsuRI	GGCC	3 cut(s)	360, 860, 892
BtgI	CCRYGG	1 cut(s)	598
BtgZI	GCGATG	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	974
BtsCI	GGATG	5 cut(s)	265, 325, 643, 925, 1131
BtsIMutI	CAGTG	3 cut(s)	250, 511, 944
Cac8I	GCNNGC	2 cut(s)	367, 1235
CaiI	CAGNNNCTG	1 cut(s)	946
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	77, 431
CspCI	CAANNNNNGTGG	2 cut(s)	1109, 1144
CviAII	CATG	6 cut(s)	8, 17, 40, 199, 590, 599
DdeI	CTNAG	3 cut(s)	867, 1140, 1247
DpnI	GATC	6 cut(s)	6, 445, 865, 1093, 1107, 1245
DpnII	GATC	6 cut(s)	4, 443, 863, 1091, 1105, 1243
DriI	GACNNNNNGTC	1 cut(s)	1078
Eam1105I	GACNNNNNGTC	1 cut(s)	1078
Eco105I	TACGTA	1 cut(s)	749
Eco130I	CCWWGG	2 cut(s)	598, 804
Eco32I	GATATC	1 cut(s)	519
Eco47I	GGWCC	2 cut(s)	77, 431
Eco57I	CTGAAG	4 cut(s)	592, 684, 1086, 1316
Eco88I	CYCGRG	2 cut(s)	270, 914
EcoNI	CCTNNNNNAGG	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	953
EcoRV	GATATC	1 cut(s)	519
EcoT14I	CCWWGG	2 cut(s)	598, 804
EcoT22I	ATGCAT	1 cut(s)	991
ErhI	CCWWGG	2 cut(s)	598, 804
FaeI	CATG	6 cut(s)	11, 20, 43, 202, 593, 602
FaqI	GGGAC	1 cut(s)	1265
FatI	CATG	6 cut(s)	7, 16, 39, 198, 589, 598
Fnu4HI	GCNGC	2 cut(s)	723, 906
FokI	GGATG	5 cut(s)	252, 332, 630, 932, 1138
Fsp4HI	GCNGC	2 cut(s)	723, 906
FspBI	CTAG	4 cut(s)	119, 389, 1241, 1308
GluI	GCNGC	2 cut(s)	723, 906
HaeIII	GGCC	3 cut(s)	360, 860, 892
HapII	CCGG	1 cut(s)	482
Hin1II	CATG	6 cut(s)	11, 20, 43, 202, 593, 602
HincII	GTYRAC	3 cut(s)	37, 328, 531
HindII	GTYRAC	3 cut(s)	37, 328, 531
HindIII	AAGCTT	1 cut(s)	411
HpaII	CCGG	1 cut(s)	482
HphI	GGTGA	4 cut(s)	67, 260, 471, 1156
Hpy166II	GTNNAC	4 cut(s)	37, 328, 531, 1131
Hpy188III	TCNNGA	7 cut(s)	8, 305, 389, 545, 671, 914, 958
Hpy8I	GTNNAC	4 cut(s)	37, 328, 531, 1131
Hpy99I	CGWCG	1 cut(s)	978
HpyAV	CCTTC	4 cut(s)	434, 708, 850, 1104
HpyCH4III	ACNGT	4 cut(s)	148, 245, 506, 535
HpyCH4IV	ACGT	4 cut(s)	22, 448, 748, 973
HpyF10VI	GCNNNNNNNGC	3 cut(s)	366, 647, 833
HpyF3I	CTNAG	3 cut(s)	867, 1140, 1247
HpySE526I	ACGT	4 cut(s)	22, 448, 748, 973
Hsp92II	CATG	6 cut(s)	11, 20, 43, 202, 593, 602
Kzo9I	GATC	6 cut(s)	4, 443, 863, 1091, 1105, 1243
LmnI	GCTCC	3 cut(s)	1212, 1278, 1291
Lsp1109I	GCAGC	2 cut(s)	709, 917
LweI	GCATC	5 cut(s)	337, 990, 998, 1126, 1226
MaeI	CTAG	4 cut(s)	119, 389, 1241, 1308
MaeII	ACGT	4 cut(s)	22, 448, 748, 973
MaeIII	GTNAC	8 cut(s)	142, 477, 500, 535, 583, 602, 829, 1144
MalI	GATC	6 cut(s)	6, 445, 865, 1093, 1107, 1245
MboI	GATC	6 cut(s)	4, 443, 863, 1091, 1105, 1243
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	2 cut(s)	863, 1243
MluCI	AATT	8 cut(s)	287, 548, 636, 658, 776, 927, 953, 993
MlyI	GAGTC	5 cut(s)	1016, 1034, 1043, 1067, 1126
MmeI	TCCRAC	1 cut(s)	1162
Mph1103I	ATGCAT	1 cut(s)	991
MseI	TTAA	6 cut(s)	234, 452, 488, 732, 926, 1271
MspCI	CTTAAG	1 cut(s)	731
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	1 cut(s)	483
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	2 cut(s)	184, 560
MwoI	GCNNNNNNNGC	3 cut(s)	366, 647, 833
NciI	CCSGG	1 cut(s)	483
NcoI	CCATGG	1 cut(s)	598
NdeII	GATC	6 cut(s)	4, 443, 863, 1091, 1105, 1243
NlaIII	CATG	6 cut(s)	11, 20, 43, 202, 593, 602
NlaIV	GGNNCC	3 cut(s)	126, 596, 1208
NmeAIII	GCCGAG	1 cut(s)	918
NmuCI	GTSAC	3 cut(s)	477, 535, 1144
NsiI	ATGCAT	1 cut(s)	991
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	1 cut(s)	7
PctI	GAATGC	2 cut(s)	184, 560
PfeI	GAWTC	6 cut(s)	68, 95, 524, 800, 1016, 1061
PflMI	CCANNNNNTGG	1 cut(s)	946
PkrI	GCNGC	2 cut(s)	724, 907
PleI	GAGTC	5 cut(s)	1015, 1033, 1042, 1067, 1126
PpsI	GAGTC	5 cut(s)	1015, 1033, 1042, 1067, 1126
Ppu21I	YACGTR	2 cut(s)	23, 749
PshAI	GACNNNNGTC	1 cut(s)	228
PspN4I	GGNNCC	3 cut(s)	126, 596, 1208
PspPI	GGNCC	2 cut(s)	77, 431
PstNI	CAGNNNCTG	1 cut(s)	946
PsuI	RGATCY	2 cut(s)	863, 1243
SaqAI	TTAA	6 cut(s)	234, 452, 488, 732, 926, 1271
SatI	GCNGC	2 cut(s)	723, 906
Sau3AI	GATC	6 cut(s)	4, 443, 863, 1091, 1105, 1243
Sau96I	GGNCC	2 cut(s)	77, 431
SchI	GAGTC	5 cut(s)	1016, 1034, 1043, 1067, 1126
ScrFI	CCNGG	1 cut(s)	483
SfaNI	GCATC	5 cut(s)	337, 990, 998, 1126, 1226
SfcI	CTRYAG	1 cut(s)	837
SinI	GGWCC	2 cut(s)	77, 431
SmlI	CTYRAG	3 cut(s)	460, 731, 1004
SmoI	CTYRAG	3 cut(s)	460, 731, 1004
SnaBI	TACGTA	1 cut(s)	749
Sse9I	AATT	8 cut(s)	287, 548, 636, 658, 776, 927, 953, 993
SsiI	CCGC	1 cut(s)	122
SspI	AATATT	1 cut(s)	1267
SspMI	CTAG	4 cut(s)	119, 389, 1241, 1308
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	2 cut(s)	598, 804
TaaI	ACNGT	4 cut(s)	148, 245, 506, 535
TaiI	ACGT	4 cut(s)	25, 451, 751, 976
TaqI	TCGA	5 cut(s)	628, 760, 976, 998, 1108
TasI	AATT	8 cut(s)	287, 548, 636, 658, 776, 927, 953, 993
TfiI	GAWTC	6 cut(s)	68, 95, 524, 800, 1016, 1061
Tru1I	TTAA	6 cut(s)	234, 452, 488, 732, 926, 1271
Tru9I	TTAA	6 cut(s)	234, 452, 488, 732, 926, 1271
TscAI	CASTG	3 cut(s)	250, 511, 951
TseFI	GTSAC	3 cut(s)	477, 535, 1144
TseI	GCWGC	2 cut(s)	722, 905
Tsp45I	GTSAC	3 cut(s)	477, 535, 1144
TspDTI	ATGAA	7 cut(s)	24, 56, 108, 300, 336, 705, 1029
TspGWI	ACGGA	1 cut(s)	1191
TspRI	CASTG	3 cut(s)	250, 511, 951
Van91I	CCANNNNNTGG	1 cut(s)	946
Vha464I	CTTAAG	1 cut(s)	731
VpaK11BI	GGWCC	2 cut(s)	77, 431
XagI	CCTNNNNNAGG	1 cut(s)	438
XapI	RAATTY	3 cut(s)	548, 776, 953
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	1 cut(s)	20
XspI	CTAG	4 cut(s)	119, 389, 1241, 1308
Zsp2I	ATGCAT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.