FvH4_6g16130
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
10151150 .. 10156327
5178 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16130.t2

Sequence Viewer

Length: 1713 bp
ATGGATCATGAAGCTCAGTTGTGCAAGAAGTTTGTCAACATGAAATCCCAAAGGGTGAAGGCGGAAGATTATTTTGCTCCTGCACTGGATGATGAAACCGAAACTATTGAGCACCTACTAGCAGAACCTAAAGCTGAATTTGTTACAGTTGATGGTGTCTTGTGTTTTGGCAAGGAGAATGCAGAAAATTGCTTGAACTTTGATGACTTTTCTTCTGGATTTGACTATGGACTAAATACATTTAATGGTGAGCGGCATTCTGTTCATCCCCGCGGGTTGCGTTCTGCTCATCCTCGCCAAGGGGACTATGAATTAGAACTTGGAGTTCTTGATGGGTTGCTGGATGAAATTGAAGAAGTGGAAGATATTCATGCAACAAATGGTCTTGCAAGTCCATGTGATGATTTTCTTCTTGATATTGGATTTACAGGGAAACTTTCTGAATTGGAATTTGGTCCTTGTGAAAAATCAAATTGTGGAAACACTGAAAGTCGGTCTCCAGGGTTAAGTGGTAGTAGTAATAGTGCTGTAGGAGTTTCAGAATCGTCAACAGTGACAATTCAAGAATTTGAGTGCAAAAATCATTCTCATCCCAAGGAATCACCTCATAAGTTTCCTGGTGACTTCAGGCGGAAAAAAAGACGTCAGACACCAGTTGAAAGAACTACCTGCCCTAGTTCGTTCAGTTTACAAAACCTTGAGGAACCTTTAGTGAATGGGTTATTGTCAAGTGAAAATGAGAAATCCTCTGTTGAAGCAAACAAAGTTGGTGCCCTTATTAAGAAGAAAAGGCTGCCTAAGACTACTCAGAGACTCGTTAAAAGGAAAGCAAAAGATTTAGTGGAAAGTGAAAACATCTCCCATCTTGCTGCTACAGAGGATCAGTGCTTGAATGCTAGATCTCAGAATAAACTTCATCCAAGACCTAGGACATTGCCACCAGTGCCTGAGGAGGATTCAATTTCAGATAATCTGACACTGTCTGAATTCAAGATTCGGATAGCACGTCCAAAGAAGCAGGCAATTCGGACTGAATTTCAACCCATTACATCTGAATCTGAAGATGAAATTGTGAGAGTGACGATACCCGAAAAGCATGATACAAGGAAGCATCAACCTATTAAATCTAAGTCTGAAGATGAAAAGGTGACCATGAAGATATCCAAAAAGCGTGATCAAAGGAAGCATCAACATATTAAATCCAAGTCTGAATATCAAACTGTGTCAAGGAGAAGATCTACAAGGCATAATCGAAGGAAGCATCAGCCTGTTGACTCTGACTCCGAAGATGAGATCCTGAGGAGGAAAAGATCTAACAAGGATGATCGAAGGAAGCATCAAAGGATGTGGGATATCTCTGAGATTATGACATTGGTTGATGGTATTTCTGAGTATGGAGTTGCACAATGGACACGCATAAAGAGGCTTCTATTTACTAATGCTTATCGTACGCCTATAGATCTCAGGGACAAATGGAGAAATCTTCTGAGTAACTGCTGTCACAGGAAACTGAAGAAAGAGCTTGATGAAAAGGAGGAGAATGACATGGATCTACCGAAGTCACTGATATACCGAGTGCGTGAGCTGGCAAAGAAACATCCATATCCAAGGCAGCGTGGTAAAAAGTGTTCCCCTGCCATACTCCCTGTTGAAAGCAAAGGTGCTTCATCTGACCTCATCATAAAGTATGTGAGAAGGAAGAACCGTTCTTGA

Protein Analysis

571

Amino Acids

65.49

Weight (kDa)

9.01

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 646
Acc36I ACCTGC 1 cut(s) 677
AccB1I GGYRCC 1 cut(s) 770
AccBSI CCGCTC 1 cut(s) 253
AccII CGCG 1 cut(s) 273
AciI CCGC 5 cut(s) 62, 253, 271, 273, 631
AclWI GGATC 4 cut(s) 12, 888, 1288, 1557
AcsI RAATTY 5 cut(s) 137, 449, 566, 986, 1034
AcuI CTGAAG 4 cut(s) 610, 1080, 1155, 1532
AcyI GRCGYC 1 cut(s) 643
AfaI GTAC 1 cut(s) 1450
AfiI CCNNNNNNNGG 1 cut(s) 299
AjiI CACGTC 1 cut(s) 1007
AjnI CCWGG 2 cut(s) 499, 616
AjuI GAANNNNNNNTTGG 4 cut(s) 303, 335, 435, 467
AloI GAACNNNNNNTCC 1 cut(s) 1690
AluBI AGCT 4 cut(s) 14, 134, 1522, 1585
AluI AGCT 4 cut(s) 14, 134, 1522, 1585
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 501, 805
AlwI GGATC 4 cut(s) 12, 888, 1288, 1557
AlwNI CAGNNNCTG 1 cut(s) 947
ApeKI GCWGC 3 cut(s) 793, 869, 1612
ApoI RAATTY 5 cut(s) 137, 449, 566, 986, 1034
Asp700I GAANNNNTTC 1 cut(s) 366
AspA2I CCTAGG 1 cut(s) 926
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 5 cut(s) 67, 260, 594, 632, 1159
AvaII GGWCC 1 cut(s) 455
AvrII CCTAGG 1 cut(s) 926
AxyI CCTNAGG 2 cut(s) 948, 1298
BaeGI GKGCMC 1 cut(s) 775
BanI GGYRCC 1 cut(s) 770
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 780, 856, 1624
BccI CCATC 4 cut(s) 146, 326, 870, 1373
BcgI CGANNNNNNTGC 2 cut(s) 1007, 1041
BciT130I CCWGG 2 cut(s) 501, 618
BclI TGATCA 1 cut(s) 1174
BcoDI GTCTC 2 cut(s) 501, 805
BfaI CTAG 4 cut(s) 119, 675, 897, 927
BfmI CTRYAG 3 cut(s) 528, 873, 1455
BfuAI ACCTGC 1 cut(s) 677
BglII AGATCT 4 cut(s) 899, 1235, 1310, 1459
BisI GCNGC 4 cut(s) 254, 794, 870, 1613
BlnI CCTAGG 1 cut(s) 926
BlsI GCNGC 4 cut(s) 255, 795, 871, 1614
Bme1390I CCNGG 2 cut(s) 501, 618
Bme18I GGWCC 1 cut(s) 455
BmgBI CACGTC 1 cut(s) 1007
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 2 cut(s) 705, 772
BmrFI CCNGG 2 cut(s) 501, 618
BmsI GCATC 4 cut(s) 1120, 1195, 1270, 1345
BplI GAGNNNNNCTC 2 cut(s) 731, 763
BpmI CTGGAG 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 643
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 6 cut(s) 271, 298, 500, 594, 926, 1607
BsaXI ACNNNNNCTCC 2 cut(s) 1265, 1295
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse1I ACTGG 3 cut(s) 90, 653, 941
Bse21I CCTNAGG 2 cut(s) 948, 1298
Bse3DI GCAATG 1 cut(s) 932
BseBI CCWGG 2 cut(s) 501, 618
BseDI CCNNGG 6 cut(s) 271, 298, 500, 594, 926, 1607
BseGI GGATG 9 cut(s) 94, 265, 289, 349, 589, 916, 1327, 1350, 1597
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 932
BseMII CTCAG 9 cut(s) 29, 821, 917, 939, 1289, 1350, 1380, 1477, 1478
BseNI ACTGG 3 cut(s) 90, 653, 941
BseRI GAGGAG 3 cut(s) 965, 1315, 1550
BseSI GKGCMC 1 cut(s) 775
BseXI GCAGC 3 cut(s) 780, 856, 1624
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 770
BsiHKAI GWGCWC 1 cut(s) 114
BsiWI CGTACG 1 cut(s) 1448
BslFI GGGAC 2 cut(s) 317, 1481
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 2 cut(s) 501, 805
BsmFI GGGAC 2 cut(s) 317, 1481
BsmI GAATGC 3 cut(s) 184, 256, 898
Bso31I GGTCTC 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 114, 775
BspACI CCGC 5 cut(s) 62, 253, 271, 273, 631
BspCNI CTCAG 9 cut(s) 28, 820, 916, 940, 1290, 1351, 1381, 1476, 1479
BspFNI CGCG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 705, 772
BspMI ACCTGC 1 cut(s) 677
BspPI GGATC 4 cut(s) 12, 888, 1288, 1557
BspT107I GGYRCC 1 cut(s) 770
BspTNI GGTCTC 1 cut(s) 501
BsrBI CCGCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 932
BsrI ACTGG 3 cut(s) 90, 653, 941
BssECI CCNNGG 6 cut(s) 271, 298, 500, 594, 926, 1607
BssNI GRCGYC 1 cut(s) 643
BssT1I CCWWGG 4 cut(s) 298, 594, 926, 1607
Bst2UI CCWGG 2 cut(s) 501, 618
Bst4CI ACNGT 5 cut(s) 148, 553, 981, 1222, 1706
BstACI GRCGYC 1 cut(s) 643
BstC8I GCNNGC 2 cut(s) 1020, 1587
BstDSI CCRYGG 1 cut(s) 271
BstEII GGTNACC 1 cut(s) 1147
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 9 cut(s) 94, 265, 289, 349, 589, 916, 1327, 1350, 1597
BstFNI CGCG 1 cut(s) 273
BstMAI GTCTC 2 cut(s) 501, 805
BstMWI GCNNNNNNNGC 1 cut(s) 943
BstNI CCWGG 2 cut(s) 501, 618
BstPI GGTNACC 1 cut(s) 1147
BstSCI CCNGG 2 cut(s) 499, 616
BstSFI CTRYAG 3 cut(s) 528, 873, 1455
BstSLI GKGCMC 1 cut(s) 775
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 3 cut(s) 780, 856, 1624
BstX2I RGATCY 6 cut(s) 899, 1235, 1293, 1310, 1459, 1549
BstYI RGATCY 6 cut(s) 899, 1235, 1293, 1310, 1459, 1549
Bsu36I CCTNAGG 2 cut(s) 948, 1298
BtgI CCRYGG 1 cut(s) 271
BtrI CACGTC 1 cut(s) 1007
BtsCI GGATG 9 cut(s) 94, 265, 289, 349, 589, 916, 1327, 1350, 1597
BtsIMutI CAGTG 7 cut(s) 83, 483, 558, 890, 948, 977, 1562
BveI ACCTGC 1 cut(s) 677
Cac8I GCNNGC 2 cut(s) 1020, 1587
CaiI CAGNNNCTG 1 cut(s) 947
CciI TCATGA 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 455
Cfr42I CCGCGG 1 cut(s) 274
Csp6I GTAC 1 cut(s) 1449
CspCI CAANNNNNGTGG 2 cut(s) 1328, 1363
CviAII CATG 7 cut(s) 8, 40, 371, 396, 1097, 1153, 1546
CviJI RGCY 7 cut(s) 14, 134, 793, 1267, 1426, 1522, 1585
CviKI_1 RGCY 7 cut(s) 14, 134, 793, 1267, 1426, 1522, 1585
CviQI GTAC 1 cut(s) 1449
EciI GGCGGA 2 cut(s) 77, 646
Eco130I CCWWGG 4 cut(s) 298, 594, 926, 1607
Eco31I GGTCTC 1 cut(s) 501
Eco32I GATATC 2 cut(s) 1161, 1354
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 4 cut(s) 610, 1080, 1155, 1532
Eco81I CCTNAGG 2 cut(s) 948, 1298
Eco91I GGTNACC 1 cut(s) 1147
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoO65I GGTNACC 1 cut(s) 1147
EcoRI GAATTC 1 cut(s) 986
EcoRII CCWGG 2 cut(s) 499, 616
EcoRV GATATC 2 cut(s) 1161, 1354
EcoT14I CCWWGG 4 cut(s) 298, 594, 926, 1607
ErhI CCWWGG 4 cut(s) 298, 594, 926, 1607
FaeI CATG 7 cut(s) 11, 43, 374, 399, 1100, 1156, 1549
FaqI GGGAC 2 cut(s) 317, 1481
FatI CATG 7 cut(s) 7, 39, 370, 395, 1096, 1152, 1545
FauI CCCGC 2 cut(s) 266, 278
FbaI TGATCA 1 cut(s) 1174
Fnu4HI GCNGC 4 cut(s) 254, 794, 870, 1613
FokI GGATG 9 cut(s) 101, 252, 276, 356, 576, 903, 1334, 1357, 1584
Fsp4HI GCNGC 4 cut(s) 254, 794, 870, 1613
FspBI CTAG 4 cut(s) 119, 675, 897, 927
GluI GCNGC 4 cut(s) 254, 794, 870, 1613
GsuI CTGGAG 1 cut(s) 483
Hin1I GRCGYC 1 cut(s) 643
Hin1II CATG 7 cut(s) 11, 43, 374, 399, 1100, 1156, 1549
HincII GTYRAC 3 cut(s) 37, 549, 1273
HindII GTYRAC 3 cut(s) 37, 549, 1273
HinfI GANTC 8 cut(s) 542, 599, 813, 956, 994, 1055, 1274, 1280
HphI GGTGA 5 cut(s) 67, 260, 594, 632, 1159
Hpy166II GTNNAC 4 cut(s) 37, 549, 689, 1273
Hpy188III TCNNGA 8 cut(s) 8, 216, 329, 413, 563, 991, 1297, 1710
Hpy8I GTNNAC 4 cut(s) 37, 549, 689, 1273
HpyAV CCTTC 4 cut(s) 52, 1248, 1323, 1689
HpyCH4III ACNGT 5 cut(s) 148, 553, 981, 1222, 1706
HpyCH4IV ACGT 2 cut(s) 643, 1006
HpyCH4V TGCA 7 cut(s) 24, 83, 182, 374, 389, 576, 1403
HpyF10VI GCNNNNNNNGC 1 cut(s) 943
HpySE526I ACGT 2 cut(s) 643, 1006
Hsp92I GRCGYC 1 cut(s) 643
Hsp92II CATG 7 cut(s) 11, 43, 374, 399, 1100, 1156, 1549
Ksp22I TGATCA 1 cut(s) 1174
KspI CCGCGG 1 cut(s) 274
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 3 cut(s) 780, 856, 1624
LweI GCATC 4 cut(s) 1120, 1195, 1270, 1345
MaeI CTAG 4 cut(s) 119, 675, 897, 927
MaeII ACGT 2 cut(s) 643, 1006
MaeIII GTNAC 8 cut(s) 142, 553, 620, 1078, 1147, 1490, 1499, 1560
MbiI CCGCTC 1 cut(s) 253
MflI RGATCY 6 cut(s) 899, 1235, 1293, 1310, 1459, 1549
MhlI GDGCHC 2 cut(s) 114, 775
MlyI GAGTC 3 cut(s) 807, 1268, 1274
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 6 cut(s) 243, 506, 780, 819, 1122, 1197
MspA1I CMGCKG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 501, 618
Mva1269I GAATGC 3 cut(s) 184, 256, 898
MvaI CCWGG 2 cut(s) 501, 618
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 943
NlaIII CATG 7 cut(s) 11, 43, 374, 399, 1100, 1156, 1549
NlaIV GGNNCC 2 cut(s) 705, 772
NmuCI GTSAC 6 cut(s) 553, 620, 1078, 1147, 1499, 1560
PagI TCATGA 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 1003
PctI GAATGC 3 cut(s) 184, 256, 898
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 5 cut(s) 542, 599, 956, 994, 1055
Pfl23II CGTACG 1 cut(s) 1448
PflFI GACNNNGTC 1 cut(s) 979
PkrI GCNGC 4 cut(s) 255, 795, 871, 1614
PleI GAGTC 3 cut(s) 807, 1268, 1274
PpsI GAGTC 3 cut(s) 807, 1268, 1274
Psp6I CCWGG 2 cut(s) 499, 616
PspEI GGTNACC 1 cut(s) 1147
PspGI CCWGG 2 cut(s) 499, 616
PspLI CGTACG 1 cut(s) 1448
PspN4I GGNNCC 2 cut(s) 705, 772
PspPI GGNCC 1 cut(s) 455
PsrI GAACNNNNNNTAC 2 cut(s) 1612, 1644
PstNI CAGNNNCTG 1 cut(s) 947
PsuI RGATCY 6 cut(s) 899, 1235, 1293, 1310, 1459, 1549
PsyI GACNNNGTC 1 cut(s) 979
RsaI GTAC 1 cut(s) 1450
RsaNI GTAC 1 cut(s) 1449
SacII CCGCGG 1 cut(s) 274
SaqAI TTAA 6 cut(s) 243, 506, 780, 819, 1122, 1197
SatI GCNGC 4 cut(s) 254, 794, 870, 1613
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 3 cut(s) 807, 1268, 1274
ScrFI CCNGG 2 cut(s) 501, 618
SduI GDGCHC 2 cut(s) 114, 775
SfaNI GCATC 4 cut(s) 1120, 1195, 1270, 1345
SfcI CTRYAG 3 cut(s) 528, 873, 1455
Sfr303I CCGCGG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 274
SinI GGWCC 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
SsiI CCGC 5 cut(s) 62, 253, 271, 273, 631
SspMI CTAG 4 cut(s) 119, 675, 897, 927
StyD4I CCNGG 2 cut(s) 499, 616
StyI CCWWGG 4 cut(s) 298, 594, 926, 1607
TaaI ACNGT 5 cut(s) 148, 553, 981, 1222, 1706
TaiI ACGT 2 cut(s) 646, 1009
TaqI TCGA 2 cut(s) 1252, 1327
TaqII GACCGA 1 cut(s) 483
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 5 cut(s) 542, 599, 956, 994, 1055
Tru1I TTAA 6 cut(s) 243, 506, 780, 819, 1122, 1197
Tru9I TTAA 6 cut(s) 243, 506, 780, 819, 1122, 1197
TscAI CASTG 7 cut(s) 90, 490, 558, 890, 948, 984, 1569
TseFI GTSAC 6 cut(s) 553, 620, 1078, 1147, 1499, 1560
TseI GCWGC 3 cut(s) 793, 869, 1612
Tsp45I GTSAC 6 cut(s) 553, 620, 1078, 1147, 1499, 1560
TspRI CASTG 7 cut(s) 90, 490, 558, 890, 948, 984, 1569
Tth111I GACNNNGTC 1 cut(s) 979
VpaK11BI GGWCC 1 cut(s) 455
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 5 cut(s) 137, 449, 566, 986, 1034
XmaJI CCTAGG 1 cut(s) 926
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 4 cut(s) 119, 675, 897, 927
ZraI GACGTC 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.