Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8179602.1

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 562

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8179602.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

gacaaatggagaaatcttctgagaagtagctgtcgaaggaaactgaagaaagaggttgaggaaaacgaggagaatgacatgcatttaccaaagtcactaatataccgtgtccgtgagctggcaaagaaacatccatatccaaggcagcgtggtaaaaagtgttcccctgccatactccctgctgaaagcaaaggtgcttcgactgaccttatcattaagtatgtgagaaggaagaaccgttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

81

Amino Acids

9.65

Weight (kDa)

10.29

Isoelectric Point (pI)

72.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	118
AloI	GAACNNNNNNTCC	1 cut(s)	223
AluBI	AGCT	2 cut(s)	30, 118
AluI	AGCT	2 cut(s)	30, 118
ApeKI	GCWGC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	157
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	107, 239
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	130
BstNSI	RCATGY	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	120
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	2 cut(s)	30, 118
CviKI_1	RGCY	2 cut(s)	30, 118
DdeI	CTNAG	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	1 cut(s)	82
FaiI	YATR	5 cut(s)	80, 103, 136, 173, 222
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	21
HpyAV	CCTTC	2 cut(s)	30, 222
HpyCH4III	ACNGT	2 cut(s)	107, 239
HpyCH4V	TGCA	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	82
LpnPI	CCDG	3 cut(s)	104, 180, 192
Lsp1109I	GCAGC	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	93
MboII	GAAGA	3 cut(s)	8, 58, 244
MnlI	CCTC	3 cut(s)	46, 52, 61
Mph1103I	ATGCAT	1 cut(s)	84
MseI	TTAA	2 cut(s)	216, 244
NlaIII	CATG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	84
NspI	RCATGY	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	147
PsrI	GAACNNNNNNTAC	2 cut(s)	145, 177
SaqAI	TTAA	2 cut(s)	216, 244
SatI	GCNGC	1 cut(s)	146
SetI	ASST	5 cut(s)	32, 57, 120, 196, 210
SgeI	CNNG	9 cut(s)	79, 91, 119, 125, 131, 153, 161, 179, 191
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	2 cut(s)	107, 239
TaqI	TCGA	2 cut(s)	34, 200
Tru1I	TTAA	2 cut(s)	216, 244
Tru9I	TTAA	2 cut(s)	216, 244
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	93
TspGWI	ACGGA	1 cut(s)	101
XceI	RCATGY	1 cut(s)	82
Zsp2I	ATGCAT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.