Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Reverse (-)

15934275 .. 15938279

Gene Structure 4005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43579

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATCATGAAGCACACTTGCGCAAGAAGTTTGTCGACATGAAATCCCAAAGGGTGAAAGTGGAAGATTCATTTGCTCCTGCACTGGATGATGAAACCGAAACAATTGAGCACTTGCTTGCAGAACCTAAAACTGAATGTGTTACAGTAGATGGTGTCTTATGTTTTGGCAAGGAGAATGCAGAAAAATGCTTAAACTTTGATGATTTTTCTTCTGGATTTGACTATGGACTAAATACATATACTGGTGGGCGGCATTCTGCTCACCCTCGTGGGCCGCGTTCTGCTCATCCTCGCCAAGGAGATTATGAATTAGAACTTGGAGTTCTTGATGGATTGCTGGATGAAGTCGAAGAAGTGGAGGATATTCATGCAACAAATGGTCTTGCAAGTCCATGTGATGATTTTCTTCTAGATATTGGATTTACGGGGAAGGTTTCTGAACTGGAATTTGGTCCTTGTGAAAGATCACATCTTGGAAACTCTGAAAGTCGGTCTCCAGGGTTAAGTGGCAGTAGTAATAGTGCAGTAGGGGTTTCAGAATCGTCTACAGTGACAATTCAAGAATTTGAGTGCAAAAATCATTCTTGTCCCAACGAATCACCTCATAAGTTGCCTGGTGACTTCAGGCGGAAAAAAAGACGTCAGGCACCAGTTGAAGGAAGTACCTGCCCTAGTTCATTCAGTTTACAAAATCTTGAAGAGTTAGATAATAATCAGAAACCTGTAGTAAGTGGATTATTGTCCAGTGAAAATGAGAAGAGCTCCGTTGAAGGAAACAAAATTGGTGCTATTATTAAGAAGAAAAGACTGCCTAAGACTACTCGGAGACATGTTGAAGATTCGTCAAAAAGGAAAGCAAAAGATTTAATGGGAAGTGAAAATATTTCTCATCTTGCTGCTACAGATGATCAGTGCTTGAAGGCTAGATCTCAGAACAAACTTCATCATACAAGACCTATGACATTGTCGTCAGTTCCTGAGGAGGATTCAATTTCAGATAATCTGACGCTGTCTGAATTCAAGATTCGGATAGCACGTCCAAAGAAGCAGTACCCTTGGTCAGACCCAGGCAATTCGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

361

Amino Acids

39.9

Weight (kDa)

5.59

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	970
AatII	GACGTC	1 cut(s)	646
Acc16I	TGCGCA	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	677
AccB1I	GGYRCC	1 cut(s)	649
AccI	GTMKAC	2 cut(s)	36, 548
AccII	CGCG	1 cut(s)	280
AciI	CCGC	3 cut(s)	253, 278, 631
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	449, 566, 1019
AcuI	CTGAAG	1 cut(s)	610
AcyI	GRCGYC	1 cut(s)	643
AfaI	GTAC	2 cut(s)	667, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	299, 659
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	8 cut(s)	563, 659, 701, 773, 839, 922, 993, 1024
AjiI	CACGTC	1 cut(s)	1040
AjnI	CCWGG	3 cut(s)	499, 616, 1069
AjuI	GAANNNNNNNTTGG	4 cut(s)	303, 335, 435, 467
AleI	CACNNNNGTG	1 cut(s)	270
AluBI	AGCT	1 cut(s)	765
AluI	AGCT	1 cut(s)	765
Alw21I	GWGCWC	2 cut(s)	114, 767
Alw26I	GTCTC	2 cut(s)	501, 823
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	980
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	899
ApoI	RAATTY	3 cut(s)	449, 566, 1019
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	275, 455
AsuHPI	GGTGA	4 cut(s)	67, 257, 594, 632
AvaII	GGWCC	1 cut(s)	455
AxyI	CCTNAGG	1 cut(s)	981
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	767
BauI	CACGAG	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	114, 767
BbvI	GCAGC	1 cut(s)	886
BccI	CCATC	2 cut(s)	146, 326
BciT130I	CCWGG	3 cut(s)	501, 618, 1071
BclI	TGATCA	1 cut(s)	910
BcoDI	GTCTC	2 cut(s)	501, 823
BfaI	CTAG	3 cut(s)	413, 675, 927
BfmI	CTRYAG	3 cut(s)	549, 726, 903
BfuAI	ACCTGC	1 cut(s)	677
BglII	AGATCT	1 cut(s)	929
BisI	GCNGC	3 cut(s)	254, 278, 900
BlsI	GCNGC	3 cut(s)	255, 279, 901
Bme1390I	CCNGG	3 cut(s)	501, 618, 1071
Bme18I	GGWCC	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	1040
BmgT120I	GGNCC	2 cut(s)	275, 455
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	3 cut(s)	501, 618, 1071
BplI	GAGNNNNNCTC	2 cut(s)	749, 781
BpmI	CTGGAG	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	714
BsaHI	GRCGYC	1 cut(s)	643
BsaI	GGTCTC	1 cut(s)	501
BsaJI	CCNNGG	4 cut(s)	298, 500, 1058, 1069
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 659
Bse1I	ACTGG	5 cut(s)	90, 250, 450, 653, 747
Bse21I	CCTNAGG	1 cut(s)	981
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	3 cut(s)	501, 618, 1071
BseDI	CCNNGG	4 cut(s)	298, 500, 1058, 1069
BseGI	GGATG	3 cut(s)	94, 289, 349
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	2 cut(s)	299, 659
BseMII	CTCAG	2 cut(s)	947, 972
BseNI	ACTGG	5 cut(s)	90, 250, 450, 653, 747
BseRI	GAGGAG	1 cut(s)	998
BseXI	GCAGC	1 cut(s)	886
BsgI	GTGCAG	2 cut(s)	66, 546
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	649
BsiHKAI	GWGCWC	2 cut(s)	114, 767
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	2 cut(s)	299, 659
BsmAI	GTCTC	2 cut(s)	501, 823
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	2 cut(s)	184, 256
BsnI	GGCC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	114, 767
Bsp143I	GATC	4 cut(s)	4, 467, 910, 929
BspACI	CCGC	3 cut(s)	253, 278, 631
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	946, 973
BspFNI	CGCG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	651
BspMI	ACCTGC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	755
BspT107I	GGYRCC	1 cut(s)	649
BspTNI	GGTCTC	1 cut(s)	501
BsrI	ACTGG	5 cut(s)	90, 250, 450, 653, 747
BssECI	CCNNGG	4 cut(s)	298, 500, 1058, 1069
BssMI	GATC	4 cut(s)	4, 467, 910, 929
BssNI	GRCGYC	1 cut(s)	643
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	298, 1058
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	3 cut(s)	501, 618, 1071
Bst4CI	ACNGT	2 cut(s)	148, 553
Bst6I	CTCTTC	2 cut(s)	696, 755
BstACI	GRCGYC	1 cut(s)	643
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	816, 933, 981
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstF5I	GGATG	3 cut(s)	94, 289, 349
BstFNI	CGCG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	4 cut(s)	7, 470, 913, 932
BstMAI	GTCTC	2 cut(s)	501, 823
BstMBI	GATC	4 cut(s)	4, 467, 910, 929
BstNI	CCWGG	3 cut(s)	501, 618, 1071
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	3 cut(s)	499, 616, 1069
BstSFI	CTRYAG	3 cut(s)	549, 726, 903
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	886
BstX2I	RGATCY	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	929
Bsu36I	CCTNAGG	1 cut(s)	981
BsuRI	GGCC	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	1040
BtsCI	GGATG	3 cut(s)	94, 289, 349
BtsIMutI	CAGTG	4 cut(s)	83, 558, 754, 920
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	980
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	275, 455
CseI	GACGC	1 cut(s)	1018
Csp6I	GTAC	2 cut(s)	666, 1054
CviAII	CATG	5 cut(s)	8, 40, 371, 396, 833
CviJI	RGCY	3 cut(s)	277, 765, 926
CviKI_1	RGCY	3 cut(s)	277, 765, 926
CviQI	GTAC	2 cut(s)	666, 1054
DdeI	CTNAG	3 cut(s)	816, 933, 981
DpnI	GATC	4 cut(s)	6, 469, 912, 931
DpnII	GATC	4 cut(s)	4, 467, 910, 929
DrdI	GACNNNNNNGTC	1 cut(s)	970
DseDI	GACNNNNNNGTC	1 cut(s)	970
Eam1104I	CTCTTC	2 cut(s)	696, 755
EarI	CTCTTC	2 cut(s)	696, 755
EciI	GGCGGA	1 cut(s)	646
Ecl136II	GAGCTC	1 cut(s)	765
Eco130I	CCWWGG	2 cut(s)	298, 1058
Eco24I	GRGCYC	1 cut(s)	767
Eco31I	GGTCTC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	455
Eco53kI	GAGCTC	1 cut(s)	765
Eco57I	CTGAAG	1 cut(s)	610
Eco81I	CCTNAGG	1 cut(s)	981
EcoICRI	GAGCTC	1 cut(s)	765
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	1019
EcoRII	CCWGG	3 cut(s)	499, 616, 1069
EcoT14I	CCWWGG	2 cut(s)	298, 1058
EcoT38I	GRGCYC	1 cut(s)	767
ErhI	CCWWGG	2 cut(s)	298, 1058
FaeI	CATG	5 cut(s)	11, 43, 374, 399, 836
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	5 cut(s)	7, 39, 370, 395, 832
FbaI	TGATCA	1 cut(s)	910
FblI	GTMKAC	2 cut(s)	36, 548
Fnu4HI	GCNGC	3 cut(s)	254, 278, 900
FokI	GGATG	3 cut(s)	101, 276, 356
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	3 cut(s)	254, 278, 900
FspBI	CTAG	3 cut(s)	413, 675, 927
FspI	TGCGCA	1 cut(s)	23
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	3 cut(s)	254, 278, 900
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	277
HgaI	GACGC	1 cut(s)	1018
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	643
Hin1II	CATG	5 cut(s)	11, 43, 374, 399, 836
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	6 cut(s)	68, 542, 599, 842, 989, 1027
HphI	GGTGA	4 cut(s)	67, 257, 594, 632
Hpy166II	GTNNAC	3 cut(s)	37, 549, 689
Hpy188III	TCNNGA	8 cut(s)	8, 216, 329, 413, 563, 698, 980, 1024
Hpy8I	GTNNAC	3 cut(s)	37, 549, 689
HpyAV	CCTTC	4 cut(s)	427, 653, 767, 916
HpyCH4III	ACNGT	2 cut(s)	148, 553
HpyCH4IV	ACGT	2 cut(s)	643, 1039
HpyCH4V	TGCA	7 cut(s)	83, 122, 182, 374, 389, 527, 576
HpyF3I	CTNAG	3 cut(s)	816, 933, 981
HpySE526I	ACGT	2 cut(s)	643, 1039
Hsp92I	GRCGYC	1 cut(s)	643
Hsp92II	CATG	5 cut(s)	11, 43, 374, 399, 836
HspAI	GCGC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	910
Kzo9I	GATC	4 cut(s)	4, 467, 910, 929
LguI	GCTCTTC	1 cut(s)	755
LmnI	GCTCC	2 cut(s)	82, 770
Lsp1109I	GCAGC	1 cut(s)	886
MaeI	CTAG	3 cut(s)	413, 675, 927
MaeII	ACGT	2 cut(s)	643, 1039
MaeIII	GTNAC	3 cut(s)	142, 553, 620
MalI	GATC	4 cut(s)	6, 469, 912, 931
MboI	GATC	4 cut(s)	4, 467, 910, 929
MboII	GAAGA	8 cut(s)	77, 204, 365, 401, 713, 772, 814, 851
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	929
MhlI	GDGCHC	2 cut(s)	114, 767
MluCI	AATT	9 cut(s)	105, 311, 449, 558, 566, 783, 993, 1019, 1075
MnlI	CCTC	6 cut(s)	279, 303, 355, 615, 976, 979
MseI	TTAA	4 cut(s)	194, 506, 798, 869
MslI	CAYNNNNRTG	1 cut(s)	270
MspR9I	CCNGG	3 cut(s)	501, 618, 1071
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	2 cut(s)	184, 256
MvaI	CCWGG	3 cut(s)	501, 618, 1071
MvnI	CGCG	1 cut(s)	280
NdeII	GATC	4 cut(s)	4, 467, 910, 929
NlaIII	CATG	5 cut(s)	11, 43, 374, 399, 836
NlaIV	GGNNCC	1 cut(s)	651
NmuCI	GTSAC	2 cut(s)	553, 620
NsbI	TGCGCA	1 cut(s)	23
NspI	RCATGY	1 cut(s)	836
OliI	CACNNNNGTG	1 cut(s)	270
PagI	TCATGA	1 cut(s)	7
PciI	ACATGT	1 cut(s)	832
PciSI	GCTCTTC	1 cut(s)	755
PcsI	WCGNNNNNNNCGW	2 cut(s)	277, 1036
PctI	GAATGC	2 cut(s)	184, 256
PfeI	GAWTC	6 cut(s)	68, 542, 599, 842, 989, 1027
PflFI	GACNNNGTC	2 cut(s)	967, 1012
PkrI	GCNGC	3 cut(s)	255, 279, 901
PscI	ACATGT	1 cut(s)	832
Psp124BI	GAGCTC	1 cut(s)	767
Psp6I	CCWGG	3 cut(s)	499, 616, 1069
PspGI	CCWGG	3 cut(s)	499, 616, 1069
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	2 cut(s)	275, 455
PstNI	CAGNNNCTG	1 cut(s)	980
PsuI	RGATCY	1 cut(s)	929
PsyI	GACNNNGTC	2 cut(s)	967, 1012
RsaI	GTAC	2 cut(s)	667, 1055
RsaNI	GTAC	2 cut(s)	666, 1054
RseI	CAYNNNNRTG	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	767
SalI	GTCGAC	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	755
SaqAI	TTAA	4 cut(s)	194, 506, 798, 869
SatI	GCNGC	3 cut(s)	254, 278, 900
Sau3AI	GATC	4 cut(s)	4, 467, 910, 929
Sau96I	GGNCC	2 cut(s)	275, 455
ScrFI	CCNGG	3 cut(s)	501, 618, 1071
SduI	GDGCHC	2 cut(s)	114, 767
SetI	ASST	9 cut(s)	130, 438, 607, 646, 671, 727, 767, 961, 1042
SfcI	CTRYAG	3 cut(s)	549, 726, 903
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	9 cut(s)	105, 311, 449, 558, 566, 783, 993, 1019, 1075
SsiI	CCGC	3 cut(s)	253, 278, 631
SspI	AATATT	1 cut(s)	886
SspMI	CTAG	3 cut(s)	413, 675, 927
SstI	GAGCTC	1 cut(s)	767
StyD4I	CCNGG	3 cut(s)	499, 616, 1069
StyI	CCWWGG	2 cut(s)	298, 1058
TaaI	ACNGT	2 cut(s)	148, 553
TaiI	ACGT	2 cut(s)	646, 1042
TaqI	TCGA	2 cut(s)	36, 351
TaqII	GACCGA	1 cut(s)	483
TasI	AATT	9 cut(s)	105, 311, 449, 558, 566, 783, 993, 1019, 1075
TauI	GCSGC	2 cut(s)	256, 280
TfiI	GAWTC	6 cut(s)	68, 542, 599, 842, 989, 1027
Tru1I	TTAA	4 cut(s)	194, 506, 798, 869
Tru9I	TTAA	4 cut(s)	194, 506, 798, 869
TscAI	CASTG	4 cut(s)	90, 558, 754, 920
TseFI	GTSAC	2 cut(s)	553, 620
TseI	GCWGC	1 cut(s)	899
Tsp45I	GTSAC	2 cut(s)	553, 620
TspDTI	ATGAA	9 cut(s)	24, 56, 60, 108, 324, 359, 360, 669, 935
TspGWI	ACGGA	1 cut(s)	757
TspRI	CASTG	4 cut(s)	90, 558, 754, 920
Tth111I	GACNNNGTC	2 cut(s)	967, 1012
VpaK11BI	GGWCC	1 cut(s)	455
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	3 cut(s)	449, 566, 1019
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	1 cut(s)	836
XmiI	GTMKAC	2 cut(s)	36, 548
XspI	CTAG	3 cut(s)	413, 675, 927
ZraI	GACGTC	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.