RLG00000024308
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
34330518 .. 34334405
3888 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024308

Sequence Viewer

Length: 1710 bp
ATGAAATCCCAAAGGGTGAAAGTGGAAGATTCATTTGCTCCTGCACTGGATGATGAAACCGAAACAATTGAGCACTTGCTTGCAGAACCTAAAACTGAATGTGTTACAGTAGATGGTGTCTTATGTTTTGGCAAGGAGAATGCAGAAAAATGCTTAAACTTTGATGATTTTTCTTCTGGATTTGACTATGGACTAAATACATATACTGGTGGGCGGCATTCTGCTCACCCTCGTGGGCCGCGTTCTGCTCATCCTCGCCAAGGAGACTATGAATTAGAACTTGGAGTTCTTGATGGATTGCTGGATGAAGTTGAAGAAGTGGAGGATATTCATGCAACAAATGGTCTTGCAAGTCCATGTGATGATTTTCTCCTAGATATTGGATTTACAGGGAAAGTTTCTGAACTGGAATTTGGTCCTTGTGAAAGATCACATCTTGGAAACTCTGAAAGTCGGTCTCCAGGGTTAAGTGGCAGTAGTAATAGTGCTGTAGGGGTTTCAGAATCGTCAACAGTGACAATTCAAGAATTTGAGTGCAAAAATAATTCTTGTCCCAAGGAATCACCTCATAAGTTGCCTGGTGACTTCAGGCGGAAAAAAAGACGTCAGGCACCAGTTGAAGGAAGTACCTGCCCTAGTTCATTCAGTTTACAAAATCTTGAAGAGTTAGATAATAATCAGAAACCTTTAGTAAGTGGGTTATTGTCCAGTGAAAATGAGAAGAGCTCCGTTGAAGCAAACAAAATTGGTGCTATTATTAAGAAGAAAAGACTGCCTAAGACTACTCGGAGACTCGTTGAAGATTCTTTAAAAAGGAAAGCAAAAGATTTAATGGGAAGTGAAAATATTTCTCGTCTTGCTGCTACAGAGGATCAGTGCTTGAAGGCTAGATCTCAGAATAAACTTCATCATACAAGACCTATGACATTGTCGTCAGTTCCTGAGGAGGATTCAATTTCAGATAATCTGACACTGTCTGAATTCAAGATTCGGATAGCACGTCCAAAGAAGCAGGCAATTCGGACTGAATTTCAACCCATTACATCTGAGTCTGAAGATGAAATTGTGAGAGTGACGATATCCGAAAAGCATGATCGAAGGAAGGATCAACCGTATAAATCCAAGTCTGACAATGAAACGGTGATCACGAAGATATCCAAAAAGCACGATCGAAGGAAGGATCAACCTATTAAATCTGAGTCGGAAGATGAAACTGTGACAAGGAGAAGATCTACAAGGCATAATCGAAGGAAGCATCAGCCTATTAACTCCGAGTCAGAAGATGAGATTGTGAGAAAGAAAAGATCTAAAAAGCATGATCGAAGGAAGCATCAAAGGATGTGGGATGTCTCTGAGGTGATGGCATTGATTGATGGTATTTCTGAATATGGAGTTGGACAATGGACACGCATAAAGAGGCTTCTATTTACATCTTCTGCTTATCGCACACCAATAGATCTCAGGGACAAATGGAGAAATCTTCTGAGAAGTAGCTGTCGAAGGAAACTGAAGAAAGAGGTCGAGGAAAAGGAGGAGAGTGACATGCATTTACCGAAGTCACTGATATACCGTGTCCGTGAGCTGGCAAAGAAACATCCATATCCAAGGCAGCGTGGTAAAAAGTGTTCCCCTGCCATACTCCCTGCTGAAAGCAAAGGTGCTTCATCTGACCTTATCATTAAGTATGTGAGAAGGAAGAACCGTTCTTGA

Protein Analysis

570

Amino Acids

64.8

Weight (kDa)

9.18

Isoelectric Point (pI)

63.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 448 - 495 6.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 931
AatII GACGTC 1 cut(s) 607
Acc36I ACCTGC 1 cut(s) 638
AccB1I GGYRCC 1 cut(s) 610
AccII CGCG 1 cut(s) 241
AciI CCGC 3 cut(s) 214, 239, 592
AclWI GGATC 3 cut(s) 879, 1113, 1188
AcsI RAATTY 4 cut(s) 410, 527, 980, 1028
AcuI CTGAAG 3 cut(s) 571, 1074, 1529
AcyI GRCGYC 1 cut(s) 604
AfaI GTAC 1 cut(s) 628
AfiI CCNNNNNNNGG 3 cut(s) 260, 620, 1582
AjiI CACGTC 1 cut(s) 1001
AjnI CCWGG 2 cut(s) 460, 577
AjuI GAANNNNNNNTTGG 6 cut(s) 264, 296, 396, 428, 1377, 1409
AleI CACNNNNGTG 1 cut(s) 231
AloI GAACNNNNNNTCC 1 cut(s) 1687
AluBI AGCT 3 cut(s) 726, 1494, 1582
AluI AGCT 3 cut(s) 726, 1494, 1582
Alw21I GWGCWC 2 cut(s) 75, 728
Alw26I GTCTC 4 cut(s) 258, 462, 784, 1354
AlwI GGATC 3 cut(s) 879, 1113, 1188
AlwNI CAGNNNCTG 1 cut(s) 941
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 860, 1609
ApoI RAATTY 4 cut(s) 410, 527, 980, 1028
AspS9I GGNCC 2 cut(s) 236, 416
AsuHPI GGTGA 6 cut(s) 28, 218, 555, 593, 1153, 1369
AvaII GGWCC 1 cut(s) 416
AxyI CCTNAGG 1 cut(s) 942
BanI GGYRCC 1 cut(s) 610
BanII GRGCYC 1 cut(s) 728
BauI CACGAG 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 75, 728
BbvI GCAGC 2 cut(s) 847, 1621
BccI CCATC 4 cut(s) 107, 287, 1354, 1367
BcgI CGANNNNNNTGC 2 cut(s) 1001, 1035
BciT130I CCWGG 2 cut(s) 462, 579
BclI TGATCA 1 cut(s) 1143
BcoDI GTCTC 4 cut(s) 258, 462, 784, 1354
BfaI CTAG 3 cut(s) 374, 636, 888
BfmI CTRYAG 2 cut(s) 489, 864
BfuAI ACCTGC 1 cut(s) 638
BglII AGATCT 4 cut(s) 890, 1229, 1304, 1456
BisI GCNGC 4 cut(s) 215, 239, 861, 1610
BlsI GCNGC 4 cut(s) 216, 240, 862, 1611
Bme1390I CCNGG 2 cut(s) 462, 579
Bme18I GGWCC 1 cut(s) 416
BmgBI CACGTC 1 cut(s) 1001
BmgT120I GGNCC 2 cut(s) 236, 416
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 2 cut(s) 462, 579
BmsI GCATC 2 cut(s) 1264, 1339
BplI GAGNNNNNCTC 2 cut(s) 710, 742
BpmI CTGGAG 1 cut(s) 444
BsaBI GATNNNNATC 1 cut(s) 675
BsaHI GRCGYC 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 462
BsaJI CCNNGG 4 cut(s) 259, 461, 555, 1604
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 620, 1582
Bse1I ACTGG 5 cut(s) 51, 211, 411, 614, 708
Bse21I CCTNAGG 1 cut(s) 942
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 2 cut(s) 462, 579
BseDI CCNNGG 4 cut(s) 259, 461, 555, 1604
BseGI GGATG 6 cut(s) 55, 250, 310, 1344, 1351, 1594
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 3 cut(s) 260, 620, 1582
BseMII CTCAG 7 cut(s) 908, 933, 1038, 1188, 1344, 1474, 1475
BseNI ACTGG 5 cut(s) 51, 211, 411, 614, 708
BseRI GAGGAG 2 cut(s) 959, 1547
BseXI GCAGC 2 cut(s) 847, 1621
BsgI GTGCAG 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 1171
BshFI GGCC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 610
BsiEI CGRYCG 1 cut(s) 1171
BsiHKAI GWGCWC 2 cut(s) 75, 728
BslFI GGGAC 2 cut(s) 537, 1478
BslI CCNNNNNNNGG 3 cut(s) 260, 620, 1582
BsmAI GTCTC 4 cut(s) 258, 462, 784, 1354
BsmFI GGGAC 2 cut(s) 537, 1478
BsmI GAATGC 2 cut(s) 145, 217
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 462
Bsp1286I GDGCHC 2 cut(s) 75, 728
BspACI CCGC 3 cut(s) 214, 239, 592
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 7 cut(s) 907, 934, 1039, 1189, 1345, 1473, 1476
BspFNI CGCG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 612
BspMI ACCTGC 1 cut(s) 638
BspPI GGATC 3 cut(s) 879, 1113, 1188
BspQI GCTCTTC 1 cut(s) 716
BspT107I GGYRCC 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 462
BsrI ACTGG 5 cut(s) 51, 211, 411, 614, 708
BssECI CCNNGG 4 cut(s) 259, 461, 555, 1604
BssNI GRCGYC 1 cut(s) 604
BssSI CACGAG 1 cut(s) 231
BssT1I CCWWGG 3 cut(s) 259, 555, 1604
Bst2BI CACGAG 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 462, 579
Bst4CI ACNGT 8 cut(s) 109, 514, 975, 1113, 1141, 1216, 1571, 1703
Bst6I CTCTTC 2 cut(s) 657, 716
BstACI GRCGYC 1 cut(s) 604
BstC8I GCNNGC 3 cut(s) 81, 1014, 1584
BstDEI CTNAG 8 cut(s) 777, 894, 942, 1047, 1197, 1353, 1460, 1484
BstENI CCTNNNNNAGG 1 cut(s) 258
BstF5I GGATG 6 cut(s) 55, 250, 310, 1344, 1351, 1594
BstFNI CGCG 1 cut(s) 241
BstMAI GTCTC 4 cut(s) 258, 462, 784, 1354
BstMCI CGRYCG 1 cut(s) 1171
BstNI CCWGG 2 cut(s) 462, 579
BstNSI RCATGY 1 cut(s) 1546
BstSCI CCNGG 2 cut(s) 460, 577
BstSFI CTRYAG 2 cut(s) 489, 864
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 847, 1621
BstX2I RGATCY 4 cut(s) 890, 1229, 1304, 1456
BstYI RGATCY 4 cut(s) 890, 1229, 1304, 1456
Bsu36I CCTNAGG 1 cut(s) 942
BsuRI GGCC 1 cut(s) 238
BtrI CACGTC 1 cut(s) 1001
BtsCI GGATG 6 cut(s) 55, 250, 310, 1344, 1351, 1594
BtsIMutI CAGTG 6 cut(s) 44, 519, 715, 881, 971, 1559
BveI ACCTGC 1 cut(s) 638
Cac8I GCNNGC 3 cut(s) 81, 1014, 1584
CaiI CAGNNNCTG 1 cut(s) 941
Cfr13I GGNCC 2 cut(s) 236, 416
Csp6I GTAC 1 cut(s) 627
CspCI CAANNNNNGTGG 2 cut(s) 1322, 1357
CviAII CATG 5 cut(s) 332, 357, 1091, 1316, 1543
CviJI RGCY 7 cut(s) 238, 726, 887, 1261, 1420, 1494, 1582
CviKI_1 RGCY 7 cut(s) 238, 726, 887, 1261, 1420, 1494, 1582
CviQI GTAC 1 cut(s) 627
DdeI CTNAG 8 cut(s) 777, 894, 942, 1047, 1197, 1353, 1460, 1484
DraI TTTAAA 1 cut(s) 810
DrdI GACNNNNNNGTC 1 cut(s) 931
DseDI GACNNNNNNGTC 1 cut(s) 931
Eam1104I CTCTTC 2 cut(s) 657, 716
EarI CTCTTC 2 cut(s) 657, 716
EciI GGCGGA 1 cut(s) 607
Ecl136II GAGCTC 1 cut(s) 726
Eco130I CCWWGG 3 cut(s) 259, 555, 1604
Eco24I GRGCYC 1 cut(s) 728
Eco31I GGTCTC 1 cut(s) 462
Eco32I GATATC 2 cut(s) 1080, 1155
Eco47I GGWCC 1 cut(s) 416
Eco53kI GAGCTC 1 cut(s) 726
Eco57I CTGAAG 3 cut(s) 571, 1074, 1529
Eco81I CCTNAGG 1 cut(s) 942
EcoICRI GAGCTC 1 cut(s) 726
EcoNI CCTNNNNNAGG 1 cut(s) 258
EcoRI GAATTC 1 cut(s) 980
EcoRII CCWGG 2 cut(s) 460, 577
EcoRV GATATC 2 cut(s) 1080, 1155
EcoT14I CCWWGG 3 cut(s) 259, 555, 1604
EcoT22I ATGCAT 1 cut(s) 1548
EcoT38I GRGCYC 1 cut(s) 728
ErhI CCWWGG 3 cut(s) 259, 555, 1604
FaeI CATG 5 cut(s) 335, 360, 1094, 1319, 1546
FaqI GGGAC 2 cut(s) 537, 1478
FatI CATG 5 cut(s) 331, 356, 1090, 1315, 1542
FbaI TGATCA 1 cut(s) 1143
Fnu4HI GCNGC 4 cut(s) 215, 239, 861, 1610
FokI GGATG 6 cut(s) 62, 237, 317, 1351, 1358, 1581
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 4 cut(s) 215, 239, 861, 1610
FspBI CTAG 3 cut(s) 374, 636, 888
GluI GCNGC 4 cut(s) 215, 239, 861, 1610
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 604
Hin1II CATG 5 cut(s) 335, 360, 1094, 1319, 1546
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HphI GGTGA 6 cut(s) 28, 218, 555, 593, 1153, 1369
Hpy166II GTNNAC 2 cut(s) 510, 650
Hpy188III TCNNGA 8 cut(s) 177, 290, 524, 659, 941, 985, 1147, 1707
Hpy8I GTNNAC 2 cut(s) 510, 650
HpyCH4III ACNGT 8 cut(s) 109, 514, 975, 1113, 1141, 1216, 1571, 1703
HpyCH4IV ACGT 2 cut(s) 604, 1000
HpyCH4V TGCA 7 cut(s) 44, 83, 143, 335, 350, 537, 1546
HpyF3I CTNAG 8 cut(s) 777, 894, 942, 1047, 1197, 1353, 1460, 1484
HpySE526I ACGT 2 cut(s) 604, 1000
Hsp92I GRCGYC 1 cut(s) 604
Hsp92II CATG 5 cut(s) 335, 360, 1094, 1319, 1546
Ksp22I TGATCA 1 cut(s) 1143
LguI GCTCTTC 1 cut(s) 716
LmnI GCTCC 2 cut(s) 43, 731
Lsp1109I GCAGC 2 cut(s) 847, 1621
LweI GCATC 2 cut(s) 1264, 1339
MaeI CTAG 3 cut(s) 374, 636, 888
MaeII ACGT 2 cut(s) 604, 1000
MaeIII GTNAC 7 cut(s) 103, 514, 581, 1072, 1216, 1538, 1557
MfeI CAATTG 1 cut(s) 66
MflI RGATCY 4 cut(s) 890, 1229, 1304, 1456
MhlI GDGCHC 2 cut(s) 75, 728
MlyI GAGTC 4 cut(s) 786, 1058, 1208, 1283
MmeI TCCRAC 2 cut(s) 1182, 1375
Mph1103I ATGCAT 1 cut(s) 1548
MseI TTAA 8 cut(s) 155, 467, 759, 809, 830, 1191, 1266, 1680
MslI CAYNNNNRTG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 462, 579
MunI CAATTG 1 cut(s) 66
Mva1269I GAATGC 2 cut(s) 145, 217
MvaI CCWGG 2 cut(s) 462, 579
MvnI CGCG 1 cut(s) 241
NlaIII CATG 5 cut(s) 335, 360, 1094, 1319, 1546
NlaIV GGNNCC 1 cut(s) 612
NmuCI GTSAC 6 cut(s) 514, 581, 1072, 1216, 1538, 1557
NsiI ATGCAT 1 cut(s) 1548
NspI RCATGY 1 cut(s) 1546
OliI CACNNNNGTG 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 716
PcsI WCGNNNNNNNCGW 3 cut(s) 238, 997, 1145
PctI GAATGC 2 cut(s) 145, 217
PfeI GAWTC 6 cut(s) 29, 503, 560, 803, 950, 988
PflFI GACNNNGTC 2 cut(s) 928, 973
PkrI GCNGC 4 cut(s) 216, 240, 862, 1611
Ple19I CGATCG 1 cut(s) 1171
PleI GAGTC 4 cut(s) 786, 1057, 1207, 1282
PpsI GAGTC 4 cut(s) 786, 1057, 1207, 1282
Psp124BI GAGCTC 1 cut(s) 728
Psp6I CCWGG 2 cut(s) 460, 577
PspGI CCWGG 2 cut(s) 460, 577
PspN4I GGNNCC 1 cut(s) 612
PspPI GGNCC 2 cut(s) 236, 416
PsrI GAACNNNNNNTAC 2 cut(s) 1609, 1641
PstNI CAGNNNCTG 1 cut(s) 941
PsuI RGATCY 4 cut(s) 890, 1229, 1304, 1456
PsyI GACNNNGTC 2 cut(s) 928, 973
PvuI CGATCG 1 cut(s) 1171
RsaI GTAC 1 cut(s) 628
RsaNI GTAC 1 cut(s) 627
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 728
SapI GCTCTTC 1 cut(s) 716
SaqAI TTAA 8 cut(s) 155, 467, 759, 809, 830, 1191, 1266, 1680
SatI GCNGC 4 cut(s) 215, 239, 861, 1610
Sau96I GGNCC 2 cut(s) 236, 416
SchI GAGTC 4 cut(s) 786, 1058, 1208, 1283
ScrFI CCNGG 2 cut(s) 462, 579
SduI GDGCHC 2 cut(s) 75, 728
SfaNI GCATC 2 cut(s) 1264, 1339
SfcI CTRYAG 2 cut(s) 489, 864
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 231
SsiI CCGC 3 cut(s) 214, 239, 592
SspI AATATT 1 cut(s) 847
SspMI CTAG 3 cut(s) 374, 636, 888
SstI GAGCTC 1 cut(s) 728
StyD4I CCNGG 2 cut(s) 460, 577
StyI CCWWGG 3 cut(s) 259, 555, 1604
TaaI ACNGT 8 cut(s) 109, 514, 975, 1113, 1141, 1216, 1571, 1703
TaiI ACGT 2 cut(s) 607, 1003
TaqI TCGA 6 cut(s) 1096, 1171, 1246, 1321, 1498, 1521
TaqII GACCGA 1 cut(s) 444
TauI GCSGC 2 cut(s) 217, 241
TfiI GAWTC 6 cut(s) 29, 503, 560, 803, 950, 988
Tru1I TTAA 8 cut(s) 155, 467, 759, 809, 830, 1191, 1266, 1680
Tru9I TTAA 8 cut(s) 155, 467, 759, 809, 830, 1191, 1266, 1680
TscAI CASTG 6 cut(s) 51, 519, 715, 881, 978, 1566
TseFI GTSAC 6 cut(s) 514, 581, 1072, 1216, 1538, 1557
TseI GCWGC 2 cut(s) 860, 1609
Tsp45I GTSAC 6 cut(s) 514, 581, 1072, 1216, 1538, 1557
TspGWI ACGGA 2 cut(s) 718, 1565
TspRI CASTG 6 cut(s) 51, 519, 715, 881, 978, 1566
Tth111I GACNNNGTC 2 cut(s) 928, 973
VpaK11BI GGWCC 1 cut(s) 416
XagI CCTNNNNNAGG 1 cut(s) 258
XapI RAATTY 4 cut(s) 410, 527, 980, 1028
XceI RCATGY 1 cut(s) 1546
XspI CTAG 3 cut(s) 374, 636, 888
ZraI GACGTC 1 cut(s) 605
Zsp2I ATGCAT 1 cut(s) 1548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.