AT2G37510

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008734
Physical Location & Seq
Reverse (-)
15742980 .. 15744606
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37510.1

Sequence Viewer

Length: 429 bp
ATGGCGTTCGTTTCCAGCTTTCGCCGTCTCGTTGCCGGATCCAGTAGCCTCTTGTCTTCTCCATCCTTGTGTGTTCGCCGCTGCTCAACTCTTACGTCTCCCCGGCTCTTCGTTAGCGGTCTCTCCAGACTCACAACAAATGAAAAGCTTCAGGATGCATTTGCTTCTTTTGGACAGCTCGTCGATGCGAGAGTGATCACAGACAGAGATTCCGGGAGATCAAAGGGTTTTGGTTTTGTGACATATGCAACAATTGAAGATGCAGAGAAAGCCAAGGCAGAGATGAATGCAAAGTTCTTGGACGGTTGGGTAATTTTTGTTGATCCTGCAAGACCTAGAGAACCAAGACGGCCTCTGCAACAGGAACCGCTTCGGCCTTCCTCCGAATCTGGTTTCACAACCAACAAAACCATCGGATGGTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

142

Amino Acids

15.71

Weight (kDa)

9.84

Isoelectric Point (pI)

65.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 36 - 102 1.7e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 417
AciI CCGC 3 cut(s) 79, 117, 368
AclWI GGATC 3 cut(s) 33, 46, 317
AcuI CTGAAG 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 417
AgsI TTSAA 1 cut(s) 257
AhdI GACNNNNNGTC 1 cut(s) 179
AluBI AGCT 3 cut(s) 18, 148, 178
AluI AGCT 3 cut(s) 18, 148, 178
Alw26I GTCTC 3 cut(s) 32, 102, 125
AlwI GGATC 3 cut(s) 33, 46, 317
AoxI GGCC 2 cut(s) 350, 374
ApeKI GCWGC 1 cut(s) 81
Asp700I GAANNNNTTC 2 cut(s) 147, 369
AsuC2I CCSGG 2 cut(s) 103, 214
BamHI GGATCC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 70, 411, 419
BceAI ACGGC 2 cut(s) 9, 365
BclI TGATCA 1 cut(s) 195
BcnI CCSGG 2 cut(s) 103, 214
BcoDI GTCTC 3 cut(s) 32, 102, 125
BfaI CTAG 1 cut(s) 336
BisI GCNGC 2 cut(s) 79, 82
BlsI GCNGC 2 cut(s) 80, 83
Bme1390I CCNGG 2 cut(s) 103, 214
BmeRI GACNNNNNGTC 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 40, 366
BmrFI CCNGG 2 cut(s) 103, 214
BmsI GCATC 3 cut(s) 145, 175, 250
BpiI GAAGAC 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 109
BpuMI CCSGG 2 cut(s) 103, 214
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 101, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse1I ACTGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 101, 273
BseGI GGATG 3 cut(s) 62, 160, 422
BseLI CCNNNNNNNGG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 68
BshFI GGCC 2 cut(s) 352, 376
BsiSI CCGG 3 cut(s) 36, 103, 213
BslI CCNNNNNNNGG 1 cut(s) 417
BsmAI GTCTC 3 cut(s) 32, 102, 125
BsmBI CGTCTC 2 cut(s) 32, 102
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 2 cut(s) 352, 376
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 38, 195, 218, 322
BspACI CCGC 3 cut(s) 79, 117, 368
BspANI GGCC 2 cut(s) 352, 376
BspLI GGNNCC 2 cut(s) 40, 366
BspPI GGATC 3 cut(s) 33, 46, 317
BspQI GCTCTTC 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 101, 273
BssMI GATC 4 cut(s) 38, 195, 218, 322
BssT1I CCWWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 113
BstF5I GGATG 3 cut(s) 62, 160, 422
BstKTI GATC 4 cut(s) 41, 198, 221, 325
BstMAI GTCTC 3 cut(s) 32, 102, 125
BstMBI GATC 4 cut(s) 38, 195, 218, 322
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 101, 212
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 2 cut(s) 352, 376
BtsCI GGATG 3 cut(s) 62, 160, 422
CviJI RGCY 8 cut(s) 18, 48, 106, 148, 178, 272, 352, 376
CviKI_1 RGCY 8 cut(s) 18, 48, 106, 148, 178, 272, 352, 376
DpnI GATC 4 cut(s) 40, 197, 220, 324
DpnII GATC 4 cut(s) 38, 195, 218, 322
DriI GACNNNNNGTC 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 113
Eam1105I GACNNNNNGTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 273
Esp3I CGTCTC 2 cut(s) 32, 102
FaiI YATR 2 cut(s) 244, 246
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 79, 82
FokI GGATG 2 cut(s) 49, 167
Fsp4HI GCNGC 2 cut(s) 79, 82
FspBI CTAG 1 cut(s) 336
GluI GCNGC 2 cut(s) 79, 82
GsuI CTGGAG 1 cut(s) 109
HaeIII GGCC 2 cut(s) 352, 376
HapII CCGG 3 cut(s) 36, 103, 213
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 3 cut(s) 129, 209, 386
HpaII CCGG 3 cut(s) 36, 103, 213
Hpy188I TCNGA 2 cut(s) 385, 416
Hpy188III TCNNGA 2 cut(s) 126, 152
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 6 cut(s) 158, 248, 263, 290, 329, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpySE526I ACGT 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 4 cut(s) 38, 195, 218, 322
LguI GCTCTTC 1 cut(s) 113
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 3 cut(s) 145, 175, 250
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 238
MalI GATC 4 cut(s) 40, 197, 220, 324
MboI GATC 4 cut(s) 38, 195, 218, 322
MboII GAAGA 3 cut(s) 48, 100, 269
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 38
MluCI AATT 2 cut(s) 252, 312
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 3 cut(s) 59, 363, 391
Mph1103I ATGCAT 1 cut(s) 160
MroXI GAANNNNTTC 2 cut(s) 147, 369
MslI CAYNNNNRTG 1 cut(s) 67
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 3 cut(s) 36, 103, 213
MspR9I CCNGG 2 cut(s) 103, 214
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 2 cut(s) 103, 214
NdeI CATATG 1 cut(s) 244
NdeII GATC 4 cut(s) 38, 195, 218, 322
NlaIV GGNNCC 2 cut(s) 40, 366
NmuCI GTSAC 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 113
PctI GAATGC 1 cut(s) 292
PdmI GAANNNNTTC 2 cut(s) 147, 369
PfeI GAWTC 2 cut(s) 209, 386
PflMI CCANNNNNTGG 1 cut(s) 417
PfoI TCCNGGA 1 cut(s) 212
PkrI GCNGC 2 cut(s) 80, 83
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 40, 366
PsuI RGATCY 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 67
SapI GCTCTTC 1 cut(s) 113
SatI GCNGC 2 cut(s) 79, 82
Sau3AI GATC 4 cut(s) 38, 195, 218, 322
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 103, 214
SetI ASST 5 cut(s) 20, 98, 150, 180, 337
SfaNI GCATC 3 cut(s) 145, 175, 250
SmiMI CAYNNNNRTG 1 cut(s) 67
Sse9I AATT 2 cut(s) 252, 312
SsiI CCGC 3 cut(s) 79, 117, 368
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 101, 212
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 183
TasI AATT 2 cut(s) 252, 312
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 2 cut(s) 209, 386
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 156, 299
Van91I CCANNNNNTGG 1 cut(s) 417
XmnI GAANNNNTTC 2 cut(s) 147, 369
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.