Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008734

Physical Location & Seq

Genomic Coordinates Reverse (-)

15948005 .. 15950073

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1185200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAAAGTTACAGACAAGTGCTGCAAAGTGCAAGCTTCTTTGGTGTGGAATGATACACAAAGGAGACCATGGATGATGGTGGGCACGAGACTGCTTAAGCTATTCAAGGTTGGAATCATGGAAGAAAATTGGAAAGGGGATCTGAGAGAGACAACAGGTTCATATCCGGTTTCAGAGGCAAGGGCCACAGTGCTACGGGTGCAAGGCCGGGTTGTAGCAAGTTTGTGGCAGAAGGCTTCGAGTATGCCCTCTAGTGAAGAGCAATATCTCTCCGGGGACGTAGGTAGGATTTTTGCCGAACCTCGTAAATTTCTCGGTGTCTTTATTTATTGTATTTTATTATGTTCAACTGAGTGTGATTTGGTGAGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00380 ko00901 ko00950 ko00965 ko01100 ko01110 ko04726 ko04728 ko05030 ko05031 ko05034 map00350 map00360 map00380 map00901 map00950 map00965 map01100 map01110 map04726 map04728 map05030 map05031 map05034

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

125

Amino Acids

14.14

Weight (kDa)

9.1

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37510 AT2G37510
fragaria_vesca	FvH4_6g14291
malus_domestica	MD04G1122000.v1.1 MD05G1303700.v1.1 MD07G1026700.v1.1 MD11G1053600.v1.1 MD12G1138600.v1.1 MD15G1425700.v1.1 MD16G1185200.v1.1
prunus_persica	Prupe.6G250500_v2.0.a1
pyrus_communis	pycom01g12040 pycom04g11060 pycom12g13260
rosa_chinensis	RchiOBHm_Chr3g0467261
rosa_laevigata	RLG00000024513
rosa_roxburghii	Rroxscaffold_6G00413770
rosa_rugosa	Rorug03G0086300
rosa_samantha	Rh3AG134600 Rh3BG155900 Rh3CG155500 Rh3DG156700
rosa_wichuraiana	Rw3G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	308
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	106, 348
AluBI	AGCT	2 cut(s)	35, 100
AluI	AGCT	2 cut(s)	35, 100
Alw26I	GTCTC	3 cut(s)	58, 82, 143
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	2 cut(s)	183, 205
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	2 cut(s)	209, 274
BaeGI	GKGCMC	1 cut(s)	86
BauI	CACGAG	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	8
BccI	CCATC	1 cut(s)	70
BcnI	CCSGG	2 cut(s)	209, 274
BcoDI	GTCTC	3 cut(s)	58, 82, 143
BfaI	CTAG	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	209, 274
BmgT120I	GGNCC	1 cut(s)	183
BmrFI	CCNGG	2 cut(s)	209, 274
BpuMI	CCSGG	2 cut(s)	209, 274
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	68, 273
BsaWI	WCCGGW	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	68, 273
BseGI	GGATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	134, 342
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	8
BshFI	GGCC	2 cut(s)	185, 207
BsiSI	CCGG	3 cut(s)	167, 208, 273
BslFI	GGGAC	1 cut(s)	290
BsmAI	GTCTC	3 cut(s)	58, 82, 143
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	185, 207
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	139
Bsp19I	CCATGG	1 cut(s)	68
BspANI	GGCC	2 cut(s)	185, 207
BspCNI	CTCAG	2 cut(s)	135, 343
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	252
BspTI	CTTAAG	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	68, 273
BssMI	GATC	1 cut(s)	139
BssSI	CACGAG	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	252
BstAFI	CTTAAG	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	143, 351
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	3 cut(s)	58, 82, 143
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	207, 272
BstSLI	GKGCMC	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	185, 207
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	183
CviAII	CATG	2 cut(s)	69, 118
CviJI	RGCY	5 cut(s)	35, 100, 185, 207, 236
CviKI_1	RGCY	5 cut(s)	35, 100, 185, 207, 236
DdeI	CTNAG	2 cut(s)	143, 351
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	2 cut(s)	72, 121
FaiI	YATR	5 cut(s)	70, 119, 163, 245, 343
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	68, 117
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	185, 207
HapII	CCGG	3 cut(s)	167, 208, 273
Hin1II	CATG	2 cut(s)	72, 121
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	3 cut(s)	167, 208, 273
Hpy188I	TCNGA	2 cut(s)	144, 175
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	24, 31, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	2 cut(s)	143, 351
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	72, 121
Kzo9I	GATC	1 cut(s)	139
LguI	GCTCTTC	1 cut(s)	252
LpnPI	CCDG	4 cut(s)	141, 180, 221, 286
Lsp1109I	GCAGC	1 cut(s)	8
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	2 cut(s)	134, 269
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	2 cut(s)	127, 308
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	4 cut(s)	169, 259, 312, 360
MseI	TTAA	1 cut(s)	96
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	3 cut(s)	167, 208, 273
MspR9I	CCNGG	2 cut(s)	209, 274
MwoI	GCNNNNNNNGC	1 cut(s)	199
NciI	CCSGG	2 cut(s)	209, 274
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	72, 121
PciSI	GCTCTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	183
ScrFI	CCNGG	2 cut(s)	209, 274
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	8 cut(s)	37, 102, 111, 160, 282, 286, 304, 371
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	127, 308
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	207, 272
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	239
TasI	AATT	2 cut(s)	127, 308
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	17, 150
TspRI	CASTG	1 cut(s)	195
Vha464I	CTTAAG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	308
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.