Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008734

Physical Location & Seq

Genomic Coordinates Reverse (-)

24561552 .. 24563266

Gene Structure 1715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G250500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGTTCATCTCTAGCTTCCGACGCGTTCTTGGCGGATCTTCCTCTGCTCTTCAATCCCAGTTCGTCTGCATTCGTCACAATTCAACTCTCACTTCCCCCAAGCTATTCATCAGCGGTCTTTCCAGATTAACAACAGATGAAAAGCTTCAAGAGGCATTTTCTCCATTTGGGCAGATTATAGATGCGAAAGTGGTTATCGATAGGGCGTCGGGAAGATCAAAGGGGTTTGGTTTCATCACATACACGTCCATTGAAGAGGCCGAGCAAGCTAGACAGGGAATGAATGCCAAGTTCTTAGATGGGTGGGTTATTTTCGTTGACCCTGCAAAACCTAGGGAGCCTAGGCCTCCACCTCAAGCACAGCCAAGTCCTTCTGAAACTGGTTTCAGAACCAACAAGACCATTGGATGGTGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

141

Amino Acids

15.39

Weight (kDa)

9.62

Isoelectric Point (pI)

65.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37510 AT2G37510
fragaria_vesca	FvH4_6g14291
malus_domestica	MD04G1122000.v1.1 MD05G1303700.v1.1 MD07G1026700.v1.1 MD11G1053600.v1.1 MD12G1138600.v1.1 MD15G1425700.v1.1 MD16G1185200.v1.1
prunus_persica	Prupe.6G250500_v2.0.a1
pyrus_communis	pycom01g12040 pycom04g11060 pycom12g13260
rosa_chinensis	RchiOBHm_Chr3g0467261
rosa_laevigata	RLG00000024513
rosa_roxburghii	Rroxscaffold_6G00413770
rosa_rugosa	Rorug03G0086300
rosa_samantha	Rh3AG134600 Rh3BG155900 Rh3CG155500 Rh3DG156700
rosa_wichuraiana	Rw3G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	411
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	36, 117
AclWI	GGATC	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	411
AflIII	ACRYGT	2 cut(s)	25, 246
AgsI	TTSAA	4 cut(s)	56, 87, 152, 257
AjiI	CACGTC	1 cut(s)	249
AluBI	AGCT	4 cut(s)	18, 106, 148, 272
AluI	AGCT	4 cut(s)	18, 106, 148, 272
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	2 cut(s)	261, 347
Asp700I	GAANNNNTTC	1 cut(s)	147
AspA2I	CCTAGG	2 cut(s)	335, 344
AvrII	CCTAGG	2 cut(s)	335, 344
BccI	CCATC	2 cut(s)	296, 405
BfaI	CTAG	4 cut(s)	15, 273, 336, 345
BlnI	CCTAGG	2 cut(s)	335, 344
BmgBI	CACGTC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	175
BmuI	ACTGGG	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	342
Bsa29I	ATCGAT	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	335, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse1I	ACTGG	2 cut(s)	61, 388
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	335, 344
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	61, 388
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	263, 349
BshVI	ATCGAT	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmI	GAATGC	2 cut(s)	72, 292
BsnI	GGCC	2 cut(s)	263, 349
Bsp143I	GATC	2 cut(s)	38, 218
BspACI	CCGC	2 cut(s)	36, 117
BspANI	GGCC	2 cut(s)	263, 349
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	46
BspQI	GCTCTTC	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	61, 388
BssECI	CCNNGG	2 cut(s)	335, 344
BssMI	GATC	2 cut(s)	38, 218
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	2 cut(s)	335, 344
Bst6I	CTCTTC	2 cut(s)	57, 252
BstACI	GRCGYC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	416
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	2 cut(s)	41, 221
BstMBI	GATC	2 cut(s)	38, 218
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 33, 269
BstUI	CGCG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	263, 349
BsuTUI	ATCGAT	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	2 cut(s)	33, 198
CviJI	RGCY	8 cut(s)	18, 106, 148, 263, 272, 343, 349, 367
CviKI_1	RGCY	8 cut(s)	18, 106, 148, 263, 272, 343, 349, 367
DdeI	CTNAG	1 cut(s)	298
DpnI	GATC	2 cut(s)	40, 220
DpnII	GATC	2 cut(s)	38, 218
Eam1104I	CTCTTC	2 cut(s)	57, 252
EarI	CTCTTC	2 cut(s)	57, 252
EciI	GGCGGA	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	335, 344
Eco147I	AGGCCT	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	335, 344
ErhI	CCWWGG	2 cut(s)	335, 344
FaiI	YATR	2 cut(s)	182, 244
FspBI	CTAG	4 cut(s)	15, 273, 336, 345
HaeIII	GGCC	2 cut(s)	263, 349
HgaI	GACGC	2 cut(s)	33, 198
Hin1I	GRCGYC	1 cut(s)	209
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	3 cut(s)	23, 379, 392
Hpy188III	TCNNGA	3 cut(s)	126, 152, 213
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	2 cut(s)	27, 214
HpyAV	CCTTC	1 cut(s)	384
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	72, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 33, 269
HpyF3I	CTNAG	1 cut(s)	298
HpySE526I	ACGT	1 cut(s)	248
Hsp92I	GRCGYC	1 cut(s)	209
Kzo9I	GATC	2 cut(s)	38, 218
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	5 cut(s)	74, 139, 263, 339, 369
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	4 cut(s)	15, 273, 336, 345
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	2 cut(s)	40, 220
MboI	GATC	2 cut(s)	38, 218
MboII	GAAGA	4 cut(s)	33, 44, 228, 269
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	1 cut(s)	82
MluI	ACGCGT	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	5 cut(s)	55, 148, 253, 360, 366
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	117
Mva1269I	GAATGC	2 cut(s)	72, 292
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	24, 33, 269
NdeII	GATC	2 cut(s)	38, 218
NlaIV	GGNNCC	1 cut(s)	342
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	77
PceI	AGGCCT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	57
PctI	GAATGC	2 cut(s)	72, 292
PdmI	GAANNNNTTC	1 cut(s)	147
PflMI	CCANNNNNTGG	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	38, 218
SetI	ASST	7 cut(s)	20, 108, 150, 251, 274, 337, 358
SfaNI	GCATC	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	1 cut(s)	82
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	2 cut(s)	36, 117
SspMI	CTAG	4 cut(s)	15, 273, 336, 345
StuI	AGGCCT	1 cut(s)	349
StyI	CCWWGG	2 cut(s)	335, 344
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	4 cut(s)	100, 156, 226, 299
Van91I	CCANNNNNTGG	1 cut(s)	411
XmaJI	CCTAGG	2 cut(s)	335, 344
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	4 cut(s)	15, 273, 336, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.