Rh3AG134600

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008734
Physical Location & Seq
Forward (+)
11677975 .. 11680232
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG134600.1

Sequence Viewer

Length: 423 bp
ATGGCGTTCATGTCTAGCTTCCGTCGCGTTCTTGGCGGATCGGCATCTGCTCTTCCATCCCAATTCGCTGCCATTCGTCACAATACAACCCTCACATCCCCTAAGCTATTCATCAGCGGACTTTCGAGATTAACAACTGATGAAAAACTTAAGCAGACGTTTTCTGAATTTGGGCAGATTGAACAGGCAAAAGTGATAACCGATAGGGCAACTGGAAGATCAAAGGGGTTTGCTTTCATTACATACTCAACGATTGAAGAAGCTGAGAAGGCAAAAGAAGGAATGAATGGCAAGTTCTTGGATGGGTGGGTCATTTTCGTTGACCCTGCCAAGCCTAGGGAGTATAGACCCCCACCTCAAGCGCAGCAAGAGTCTTCTGATAATGGTTTCAAAGTAAACAAGACAATTGGATGGTGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

140

Amino Acids

15.49

Weight (kDa)

9.52

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 36 - 102 2.1e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AciI CCGC 2 cut(s) 36, 117
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 336
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 3 cut(s) 182, 257, 391
AluBI AGCT 3 cut(s) 18, 106, 263
AluI AGCT 3 cut(s) 18, 106, 263
AlwI GGATC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 68, 364
ApoI RAATTY 1 cut(s) 167
AspA2I CCTAGG 1 cut(s) 335
AspLEI GCGC 1 cut(s) 364
AvrII CCTAGG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 55, 376
BccI CCATC 3 cut(s) 64, 296, 405
BfaI CTAG 2 cut(s) 15, 336
BfrI CTTAAG 1 cut(s) 149
BisI GCNGC 2 cut(s) 69, 365
BlnI CCTAGG 1 cut(s) 335
BlsI GCNGC 2 cut(s) 70, 366
BmsI GCATC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 4 cut(s) 56, 95, 307, 416
BseJI GATNNNNATC 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 55, 376
Bsh1236I CGCG 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 336
Bsp143I GATC 2 cut(s) 38, 218
BspACI CCGC 2 cut(s) 36, 117
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 27
BspPI GGATC 1 cut(s) 46
BspQI GCTCTTC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 2 cut(s) 38, 218
BssT1I CCWWGG 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 102, 264
BstF5I GGATG 4 cut(s) 56, 95, 307, 416
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 2 cut(s) 41, 221
BstMBI GATC 2 cut(s) 38, 218
BstMWI GCNNNNNNNGC 3 cut(s) 24, 33, 269
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 55, 376
BstV2I GAAGAC 1 cut(s) 366
BtsCI GGATG 4 cut(s) 56, 95, 307, 416
CfoI GCGC 1 cut(s) 364
CviAII CATG 1 cut(s) 10
CviJI RGCY 4 cut(s) 18, 106, 263, 334
CviKI_1 RGCY 4 cut(s) 18, 106, 263, 334
DdeI CTNAG 2 cut(s) 102, 264
DpnI GATC 2 cut(s) 40, 220
DpnII GATC 2 cut(s) 38, 218
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 1 cut(s) 13
FaiI YATR 3 cut(s) 11, 244, 345
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 69, 365
FokI GGATG 3 cut(s) 43, 82, 314
Fsp4HI GCNGC 2 cut(s) 69, 365
FspBI CTAG 2 cut(s) 15, 336
GlaI GCGC 1 cut(s) 363
GluI GCNGC 2 cut(s) 69, 365
HhaI GCGC 1 cut(s) 364
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 1 cut(s) 371
Hpy166II GTNNAC 2 cut(s) 322, 397
Hpy188I TCNGA 2 cut(s) 166, 379
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 2 cut(s) 322, 397
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 262, 272
HpyCH4IV ACGT 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 33, 269
HpyF3I CTNAG 2 cut(s) 102, 264
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 362
Kzo9I GATC 2 cut(s) 38, 218
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 3 cut(s) 170, 198, 339
Lsp1109I GCAGC 2 cut(s) 55, 376
LweI GCATC 1 cut(s) 53
MaeI CTAG 2 cut(s) 15, 336
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 40, 220
MboI GATC 2 cut(s) 38, 218
MboII GAAGA 4 cut(s) 44, 228, 269, 366
MfeI CAATTG 1 cut(s) 405
MluCI AATT 3 cut(s) 62, 167, 405
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 2 cut(s) 101, 366
MseI TTAA 2 cut(s) 131, 150
MspA1I CMGCKG 1 cut(s) 117
MspCI CTTAAG 1 cut(s) 149
MunI CAATTG 1 cut(s) 405
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 24, 33, 269
NdeII GATC 2 cut(s) 38, 218
NlaIII CATG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 70, 366
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 131, 150
SatI GCNGC 2 cut(s) 69, 365
Sau3AI GATC 2 cut(s) 38, 218
SchI GAGTC 1 cut(s) 380
SetI ASST 5 cut(s) 20, 108, 161, 265, 358
SfaNI GCATC 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 149, 357
SmoI CTYRAG 2 cut(s) 149, 357
Sse9I AATT 3 cut(s) 62, 167, 405
SsiI CCGC 2 cut(s) 36, 117
SspMI CTAG 2 cut(s) 15, 336
StyI CCWWGG 1 cut(s) 335
TaiI ACGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 125
TasI AATT 3 cut(s) 62, 167, 405
Tru1I TTAA 2 cut(s) 131, 150
Tru9I TTAA 2 cut(s) 131, 150
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 2 cut(s) 68, 364
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 4 cut(s) 100, 156, 226, 299
TspGWI ACGGA 1 cut(s) 11
Vha464I CTTAAG 1 cut(s) 149
XapI RAATTY 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 335
XspI CTAG 2 cut(s) 15, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.