Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008734

Physical Location & Seq

Genomic Coordinates Forward (+)

43611857 .. 43614737

Gene Structure 2881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1303700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCTTGAATCAAAAGGAAGCATGAATTTCCTCGTGTTATTCGGTCTTTCCCACCAGAATCCAATCTATGACATATTTTTCACTATGATATACAAAGTCAAGGACGTGGTGGATACTGGATATGATTTAGTACTCGTCACTCTGATTTTAATGGGAGAGGCGGTTTTACGCCTGAAGAAATGGAAGCCGTGTTTAGAGATGCTTGGATCAACTGCGAAAGTTGATGTTGAAGAAGAAGACAAATGTCTCTCTCTTCTTACCTCACTTTCAGATTTGTACGAGAACCTAGTGAAACTTTACTACATGAAAGATACAGTAAGTTTGGAGCAGGTGCAAGCTTCTTTGGTGTGGAATGATACACAAAAGAAGATGACCATGGATGATGGTGGGCATAAAACTGCTTTCGTTGTTCAAGGTTGGAATCGTGGAAGAAAATTAGAAAGAGGATCTGAGAGAGAGCAGGTTCAGATCCGGTTCCGAAGGCAAGGATCCATAGTGCTACAGGTGTTAGGCCGGGTTGTAGCAAATTTGTGGCAGAAAGCTTCGAGTATGCCCTCTAGTGAAGAGCAATATCTCTCCGGGGACGTAGGCATGTTTTTGCCAAACCTCGTAAATTTCTCAGTGCCTTTATTTCTTGTATTTTATTCTGTTCAACTGAGTGTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

223

Amino Acids

25.32

Weight (kDa)

6.16

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37510 AT2G37510
fragaria_vesca	FvH4_6g14291
malus_domestica	MD04G1122000.v1.1 MD05G1303700.v1.1 MD07G1026700.v1.1 MD11G1053600.v1.1 MD12G1138600.v1.1 MD15G1425700.v1.1 MD16G1185200.v1.1
prunus_persica	Prupe.6G250500_v2.0.a1
pyrus_communis	pycom01g12040 pycom04g11060 pycom12g13260
rosa_chinensis	RchiOBHm_Chr3g0467261
rosa_laevigata	RLG00000024513
rosa_roxburghii	Rroxscaffold_6G00413770
rosa_rugosa	Rorug03G0086300
rosa_samantha	Rh3AG134600 Rh3BG155900 Rh3CG155500 Rh3DG156700
rosa_wichuraiana	Rw3G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
Acc36I	ACCTGC	2 cut(s)	319, 451
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	5 cut(s)	214, 454, 463, 483, 496
AcsI	RAATTY	3 cut(s)	25, 526, 613
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	2 cut(s)	132, 278
AgsI	TTSAA	4 cut(s)	8, 230, 413, 653
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	2 cut(s)	338, 542
AluI	AGCT	2 cut(s)	338, 542
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	5 cut(s)	214, 454, 463, 483, 496
AoxI	GGCC	1 cut(s)	511
ApoI	RAATTY	3 cut(s)	25, 526, 613
AsuC2I	CCSGG	2 cut(s)	515, 580
BamHI	GGATCC	1 cut(s)	488
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	243
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	172
BciVI	GTATCC	1 cut(s)	106
BcnI	CCSGG	2 cut(s)	515, 580
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	2 cut(s)	287, 558
BfmI	CTRYAG	1 cut(s)	500
BfuAI	ACCTGC	2 cut(s)	319, 451
BfuI	GTATCC	1 cut(s)	106
BmcAI	AGTACT	1 cut(s)	132
Bme1390I	CCNGG	2 cut(s)	515, 580
BmgBI	CACGTC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	476, 490
BmrFI	CCNGG	2 cut(s)	515, 580
BmsI	GCATC	1 cut(s)	189
BoxI	GACNNNNGTC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	243
BpuMI	CCSGG	2 cut(s)	515, 580
BsaJI	CCNNGG	2 cut(s)	375, 579
BsaWI	WCCGGW	1 cut(s)	471
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bse1I	ACTGG	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	375, 579
BseGI	GGATG	1 cut(s)	385
BseMII	CTCAG	3 cut(s)	441, 633, 647
BseNI	ACTGG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	513
BsiSI	CCGG	3 cut(s)	472, 514, 579
BslFI	GGGAC	1 cut(s)	596
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	206, 446, 468, 488
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	3 cut(s)	442, 632, 648
BspLI	GGNNCC	2 cut(s)	476, 490
BspMI	ACCTGC	2 cut(s)	319, 451
BspPI	GGATC	5 cut(s)	214, 454, 463, 483, 496
BspQI	GCTCTTC	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	375, 579
BssMI	GATC	4 cut(s)	206, 446, 468, 488
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	2 cut(s)	258, 558
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	450, 619, 656
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	4 cut(s)	209, 449, 471, 491
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	206, 446, 468, 488
BstNSI	RCATGY	1 cut(s)	595
BstPAI	GACNNNNGTC	1 cut(s)	243
BstSCI	CCNGG	2 cut(s)	513, 578
BstSFI	CTRYAG	1 cut(s)	500
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	3 cut(s)	446, 468, 488
BstYI	RGATCY	3 cut(s)	446, 468, 488
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	513
BtgI	CCRYGG	1 cut(s)	375
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	627
BveI	ACCTGC	2 cut(s)	319, 451
Cac8I	GCNNGC	1 cut(s)	336
Csp6I	GTAC	2 cut(s)	131, 277
CviAII	CATG	4 cut(s)	22, 304, 376, 592
CviJI	RGCY	4 cut(s)	187, 338, 513, 542
CviKI_1	RGCY	4 cut(s)	187, 338, 513, 542
CviQI	GTAC	2 cut(s)	131, 277
DdeI	CTNAG	3 cut(s)	450, 619, 656
DpnI	GATC	4 cut(s)	208, 448, 470, 490
DpnII	GATC	4 cut(s)	206, 446, 468, 488
Eam1104I	CTCTTC	2 cut(s)	258, 558
EarI	CTCTTC	2 cut(s)	258, 558
Eco130I	CCWWGG	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	4 cut(s)	25, 307, 379, 595
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	4 cut(s)	21, 303, 375, 591
FokI	GGATG	1 cut(s)	392
FspBI	CTAG	2 cut(s)	287, 558
HaeIII	GGCC	1 cut(s)	513
HapII	CCGG	3 cut(s)	472, 514, 579
Hin1II	CATG	4 cut(s)	25, 307, 379, 595
HindIII	AAGCTT	2 cut(s)	336, 540
HinfI	GANTC	3 cut(s)	8, 58, 421
HpaII	CCGG	3 cut(s)	472, 514, 579
Hpy188I	TCNGA	5 cut(s)	144, 271, 451, 468, 479
HpyAV	CCTTC	1 cut(s)	474
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	2 cut(s)	105, 585
HpyCH4V	TGCA	1 cut(s)	334
HpyF3I	CTNAG	3 cut(s)	450, 619, 656
HpySE526I	ACGT	2 cut(s)	105, 585
Hsp92II	CATG	4 cut(s)	25, 307, 379, 595
Kzo9I	GATC	4 cut(s)	206, 446, 468, 488
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	9 cut(s)	68, 102, 185, 314, 446, 485, 488, 527, 592
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	287, 558
MaeII	ACGT	2 cut(s)	105, 585
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	4 cut(s)	208, 448, 470, 490
MboI	GATC	4 cut(s)	206, 446, 468, 488
MboII	GAAGA	8 cut(s)	187, 242, 245, 245, 248, 379, 441, 575
MflI	RGATCY	3 cut(s)	446, 468, 488
MluCI	AATT	4 cut(s)	25, 434, 526, 613
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	6 cut(s)	41, 151, 271, 437, 565, 617
MseI	TTAA	1 cut(s)	149
MspI	CCGG	3 cut(s)	472, 514, 579
MspR9I	CCNGG	2 cut(s)	515, 580
NciI	CCSGG	2 cut(s)	515, 580
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	4 cut(s)	206, 446, 468, 488
NlaIII	CATG	4 cut(s)	25, 307, 379, 595
NlaIV	GGNNCC	2 cut(s)	476, 490
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	595
PaqCI	CACCTGC	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	558
PfeI	GAWTC	3 cut(s)	8, 58, 421
PshAI	GACNNNNGTC	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	476, 490
PsuI	RGATCY	3 cut(s)	446, 468, 488
RsaI	GTAC	2 cut(s)	132, 278
RsaNI	GTAC	2 cut(s)	131, 277
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	149
Sau3AI	GATC	4 cut(s)	206, 446, 468, 488
ScaI	AGTACT	1 cut(s)	132
ScrFI	CCNGG	2 cut(s)	515, 580
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	500
Sse9I	AATT	4 cut(s)	25, 434, 526, 613
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	2 cut(s)	287, 558
StyD4I	CCNGG	2 cut(s)	513, 578
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	2 cut(s)	108, 588
TaqI	TCGA	1 cut(s)	545
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	4 cut(s)	25, 434, 526, 613
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	8, 58, 421
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	627
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	38, 320
TspRI	CASTG	1 cut(s)	627
XapI	RAATTY	3 cut(s)	25, 526, 613
XceI	RCATGY	1 cut(s)	595
XspI	CTAG	2 cut(s)	287, 558
ZrmI	AGTACT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.