Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008734

Physical Location & Seq

Genomic Coordinates Reverse (-)

13866848 .. 13868115

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g11060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGTTCATCTCCGCCTTCCGCCGCGTCCTCGGAGGATCTTCCTCCGCTCTCCATTCCCAATTCGCAGCCATTCGTCACAATTCAACTCTCACATCCCCCAGGCTGTTCATCAGCGGTCTCTCAAGATTAACAACAGACGAAAAGCTTAGAGAGGCATTTTCCCCATTTGGGCAGATTGTAGATGCGAAAGTGGTTATCGATAGGGTGTCTCAAAGATCGAAGGGTTTTGGTTTCATTACATACGCATCAGTTGAAGAAGCCGAGAAAGCTAGAGAAGGGATGAATGCCAAGTTCTTGGATGGGTGGGTTATTTTTGTCGACCCTGCCAAACCTAGGGAGCCTAGATTTCCTCCTCCGCAAGCACAGCAGGACCCTTCTGAAACCGGCTTCAGATCAAACAAGACCATCGGATGGTGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

142

Amino Acids

15.61

Weight (kDa)

9.79

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37510 AT2G37510
fragaria_vesca	FvH4_6g14291
malus_domestica	MD04G1122000.v1.1 MD05G1303700.v1.1 MD07G1026700.v1.1 MD11G1053600.v1.1 MD12G1138600.v1.1 MD15G1425700.v1.1 MD16G1185200.v1.1
prunus_persica	Prupe.6G250500_v2.0.a1
pyrus_communis	pycom01g12040 pycom04g11060 pycom12g13260
rosa_chinensis	RchiOBHm_Chr3g0467261
rosa_laevigata	RLG00000024513
rosa_roxburghii	Rroxscaffold_6G00413770
rosa_rugosa	Rorug03G0086300
rosa_samantha	Rh3AG134600 Rh3BG155900 Rh3CG155500 Rh3DG156700
rosa_wichuraiana	Rw3G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	414
AccBSI	CCGCTC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	1 cut(s)	27
AciI	CCGC	6 cut(s)	15, 22, 25, 48, 117, 359
AclWI	GGATC	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	376
AfiI	CCNNNNNNNGG	3 cut(s)	171, 336, 414
AgsI	TTSAA	2 cut(s)	87, 257
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	2 cut(s)	148, 272
AluI	AGCT	2 cut(s)	148, 272
Alw26I	GTCTC	2 cut(s)	125, 216
AlwI	GGATC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	68
AspA2I	CCTAGG	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	373
AvrII	CCTAGG	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	3 cut(s)	296, 408, 416
BciT130I	CCWGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	125, 216
BfaI	CTAG	3 cut(s)	273, 336, 345
BisI	GCNGC	2 cut(s)	25, 69
BlnI	CCTAGG	1 cut(s)	335
BlsI	GCNGC	2 cut(s)	26, 70
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	342, 375
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	175, 257
BpuEI	CTTGAG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	31, 101, 335
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 336, 414
Bse118I	RCCGGY	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	103
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	3 cut(s)	31, 101, 335
BseGI	GGATG	4 cut(s)	95, 288, 307, 419
BseLI	CCNNNNNNNGG	3 cut(s)	171, 336, 414
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	387
BslI	CCNNNNNNNGG	3 cut(s)	171, 336, 414
BsmAI	GTCTC	2 cut(s)	125, 216
BsmI	GAATGC	1 cut(s)	292
Bso31I	GGTCTC	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	38, 218, 395
BspACI	CCGC	6 cut(s)	15, 22, 25, 48, 117, 359
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	342, 375
BspPI	GGATC	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	3 cut(s)	31, 101, 335
BssMI	GATC	3 cut(s)	38, 218, 395
BssT1I	CCWWGG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	4 cut(s)	95, 288, 307, 419
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	3 cut(s)	41, 221, 398
BstMAI	GTCTC	2 cut(s)	125, 216
BstMBI	GATC	3 cut(s)	38, 218, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 367
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	38
Bsu15I	ATCGAT	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	4 cut(s)	95, 288, 307, 419
Cac8I	GCNNGC	1 cut(s)	363
Cfr10I	RCCGGY	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	373
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	16
CviJI	RGCY	7 cut(s)	71, 106, 148, 263, 272, 343, 390
CviKI_1	RGCY	7 cut(s)	71, 106, 148, 263, 272, 343, 390
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	3 cut(s)	40, 220, 397
DpnII	GATC	3 cut(s)	38, 218, 395
EciI	GGCGGA	2 cut(s)	4, 11
Eco130I	CCWWGG	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	335
FaiI	YATR	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	25, 69
FokI	GGATG	3 cut(s)	82, 295, 314
Fsp4HI	GCNGC	2 cut(s)	25, 69
FspBI	CTAG	3 cut(s)	273, 336, 345
GluI	GCNGC	2 cut(s)	25, 69
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	146
HpaII	CCGG	1 cut(s)	387
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	4 cut(s)	35, 382, 395, 413
Hpy188III	TCNNGA	1 cut(s)	126
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	4 cut(s)	28, 217, 272, 387
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 367
HpyF3I	CTNAG	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	38, 218, 395
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	5 cut(s)	88, 115, 339, 356, 400
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	2 cut(s)	175, 257
MaeI	CTAG	3 cut(s)	273, 336, 345
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	40, 220, 397
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	3 cut(s)	38, 218, 395
MboII	GAAGA	2 cut(s)	33, 269
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	2 cut(s)	62, 82
MnlI	CCTC	6 cut(s)	29, 41, 55, 148, 363, 366
MseI	TTAA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	269, 367
NdeII	GATC	3 cut(s)	38, 218, 395
NlaIV	GGNNCC	2 cut(s)	342, 375
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	77
PctI	GAATGC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	26, 70
PpuMI	RGGWCCY	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	342, 375
PspPI	GGNCC	1 cut(s)	373
PspPPI	RGGWCCY	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	2 cut(s)	25, 69
Sau3AI	GATC	3 cut(s)	38, 218, 395
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	3 cut(s)	150, 274, 337
SfaNI	GCATC	2 cut(s)	175, 257
SinI	GGWCC	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	62, 82
SsiI	CCGC	6 cut(s)	15, 22, 25, 48, 117, 359
SspMI	CTAG	3 cut(s)	273, 336, 345
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	335
TaqI	TCGA	3 cut(s)	201, 221, 321
TasI	AATT	2 cut(s)	62, 82
TauI	GCSGC	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	100, 226, 299
Van91I	CCANNNNNTGG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	373
XmaJI	CCTAGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	3 cut(s)	273, 336, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.