FvH4_6g14291

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008734
Physical Location & Seq
Forward (+)
8762546 .. 8764281
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14291.t1

Sequence Viewer

Length: 423 bp
ATGGCGTTCATGTCTAGCTTCCGTCGCGTTCTTGGCGTATCGGCCTCTGCTCTTCCATCTCAATTCGCCGCCATTCGTCACAATACAACCCTCACATCGCCTAAGCTATTCATCAGCGGACTTTCAAGATTAACAACTGATGAAAAACTTAAACAGACGTTTTCTGAATTTGGTCAGATTGAACACGCAAAAGTGATAACCGATAGGCAAACCGGAAGATCAAAGGGGTTTGCTTTCGTCACATACTCATCGATTGAAGAAGCTGAGAAGGCTAAAGAAGGAATGAACGGCAAGTTCTTGGATGGGTGGGTTATTTTTGTTGACCCTGCCAAGCCTAGGGAGTATAGACCCCCACCTCCAGCACAGCAAGAGTCTTCTGATAGTGGTTTCAAAGTAAACAAGACTATTGGATGGTGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

141

Amino Acids

15.51

Weight (kDa)

9.52

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 36 - 102 2.3e-24 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AciI CCGC 2 cut(s) 69, 117
AcsI RAATTY 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 336
AgsI TTSAA 4 cut(s) 126, 182, 257, 391
AluBI AGCT 3 cut(s) 18, 106, 263
AluI AGCT 3 cut(s) 18, 106, 263
AoxI GGCC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 167
AspA2I CCTAGG 1 cut(s) 335
AvrII CCTAGG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 366
BccI CCATC 3 cut(s) 64, 296, 405
BceAI ACGGC 1 cut(s) 304
BfaI CTAG 2 cut(s) 15, 336
BisI GCNGC 1 cut(s) 69
BlnI CCTAGG 1 cut(s) 335
BlsI GCNGC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 102
Bsa29I ATCGAT 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 2 cut(s) 307, 416
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 251
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 336
BsnI GGCC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 218
BspACI CCGC 2 cut(s) 69, 117
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 256
BspDI ATCGAT 1 cut(s) 251
BspFNI CGCG 1 cut(s) 27
BspQI GCTCTTC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 102, 264
BstF5I GGATG 2 cut(s) 307, 416
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 1 cut(s) 221
BstMBI GATC 1 cut(s) 218
BstMWI GCNNNNNNNGC 3 cut(s) 24, 33, 269
BstUI CGCG 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 366
Bsu15I ATCGAT 1 cut(s) 251
BsuRI GGCC 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 251
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 307, 416
ClaI ATCGAT 1 cut(s) 251
CviAII CATG 1 cut(s) 10
CviJI RGCY 6 cut(s) 18, 44, 106, 263, 272, 334
CviKI_1 RGCY 6 cut(s) 18, 44, 106, 263, 272, 334
DdeI CTNAG 2 cut(s) 102, 264
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 1 cut(s) 13
FaiI YATR 3 cut(s) 11, 244, 345
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 15, 336
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 1 cut(s) 44
HapII CCGG 1 cut(s) 213
Hin1II CATG 1 cut(s) 13
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 1 cut(s) 371
HpaII CCGG 1 cut(s) 213
Hpy166II GTNNAC 2 cut(s) 322, 397
Hpy188I TCNGA 3 cut(s) 166, 177, 379
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 2 cut(s) 322, 397
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 262, 272
HpyCH4IV ACGT 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 33, 269
HpyF3I CTNAG 2 cut(s) 102, 264
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 1 cut(s) 218
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 3 cut(s) 226, 339, 372
MaeI CTAG 2 cut(s) 15, 336
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 77, 238
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MboII GAAGA 4 cut(s) 44, 228, 269, 366
MluCI AATT 2 cut(s) 62, 167
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 3 cut(s) 55, 101, 366
MseI TTAA 2 cut(s) 131, 150
MspA1I CMGCKG 1 cut(s) 117
MspI CCGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 24, 33, 269
NdeII GATC 1 cut(s) 218
NlaIII CATG 1 cut(s) 13
NmuCI GTSAC 2 cut(s) 77, 238
PciSI GCTCTTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 131, 150
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 218
SchI GAGTC 1 cut(s) 380
SetI ASST 5 cut(s) 20, 108, 161, 265, 358
Sse9I AATT 2 cut(s) 62, 167
SsiI CCGC 2 cut(s) 69, 117
SspMI CTAG 2 cut(s) 15, 336
StyI CCWWGG 1 cut(s) 335
TaiI ACGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 251
TasI AATT 2 cut(s) 62, 167
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 131, 150
Tru9I TTAA 2 cut(s) 131, 150
TseFI GTSAC 2 cut(s) 77, 238
Tsp45I GTSAC 2 cut(s) 77, 238
TspDTI ATGAA 3 cut(s) 100, 156, 299
TspGWI ACGGA 1 cut(s) 11
XapI RAATTY 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 335
XspI CTAG 2 cut(s) 15, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.