MD07G1026700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0008734
Physical Location & Seq
Forward (+)
2245182 .. 2246415
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1026700.v1.1.491

Sequence Viewer

Length: 510 bp
ATGGTTTTAGTTCAAGGATGGTATACCTTATTGGGAAAAGCAATACTGCACTTTGGTCGGGCCTATACCGTGGTGGAAGGTAGTAGATGCCTGCTGAGGAGGCATTTCAAGATGCAAAAAAAGGCTTTTGGACAGACATCAATGGCCTCCGCTGTGACGCCTCTCTGCCAGATTATTGATACAATAGATTGGAACCCCAATATCGATCGTGCACTCGTTAAGGAGGTGGATCATGAATACTTTGCTCCTGATGAGGGAGAAGGGAAAGGCAAGATTGGGCAAACAAACAAGAAGGCAAAATATTCAGATTTTGTTCCTCTCGATGAACATAACACAATCCTAGATGATCGTACAAATCCTTGGGAATGTGACAACATTCTGTTGTGTTTGGCTCATACATTTCAATATCTCTCCGGGGACGTAGGCAGGATTTTTGCCGAACCTCGTAAATTTCTCGGTGTCTTTATTTCTTGTATTTTATTCTGTTCAACTGTGAGTGTGATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.2

Weight (kDa)

6.94

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 23
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 237
AcsI RAATTY 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 4 cut(s) 14, 109, 404, 489
Alw21I GWGCWC 1 cut(s) 214
Alw44I GTGCAC 1 cut(s) 210
AlwI GGATC 1 cut(s) 237
AoxI GGCC 2 cut(s) 60, 144
ApaLI GTGCAC 1 cut(s) 210
ApoI RAATTY 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 60
AsuC2I CCSGG 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 12
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BcnI CCSGG 1 cut(s) 415
BfaI CTAG 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 415
BmsI GCATC 2 cut(s) 77, 102
Bpu10I CCTNAGC 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 415
Bsa29I ATCGAT 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 3 cut(s) 69, 359, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 254
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 69, 359, 414
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 2 cut(s) 62, 146
BshVI ATCGAT 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 2 cut(s) 62, 146
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 3 cut(s) 205, 229, 346
BspACI CCGC 1 cut(s) 150
BspANI GGCC 2 cut(s) 62, 146
BspCNI CTCAG 1 cut(s) 87
BspDI ATCGAT 1 cut(s) 204
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 194
BspPI GGATC 1 cut(s) 237
BssECI CCNNGG 3 cut(s) 69, 359, 414
BssMI GATC 3 cut(s) 205, 229, 346
BssNAI GTATAC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 359
Bst1107I GTATAC 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 70, 493
BstACI GRCGYC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 23
BstKTI GATC 3 cut(s) 208, 232, 349
BstMBI GATC 3 cut(s) 205, 229, 346
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 413
BstSLI GKGCMC 1 cut(s) 214
BstZ17I GTATAC 1 cut(s) 24
Bsu15I ATCGAT 1 cut(s) 204
BsuRI GGCC 2 cut(s) 62, 146
BsuTUI ATCGAT 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 92
CciI TCATGA 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 60
ClaI ATCGAT 1 cut(s) 204
CseI GACGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 351
CviAII CATG 1 cut(s) 233
CviJI RGCY 4 cut(s) 62, 125, 146, 392
CviKI_1 RGCY 4 cut(s) 62, 125, 146, 392
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 1 cut(s) 95
DpnI GATC 3 cut(s) 207, 231, 348
DpnII GATC 3 cut(s) 205, 229, 346
Eco130I CCWWGG 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 1 cut(s) 236
FaiI YATR 5 cut(s) 24, 66, 234, 330, 396
FaqI GGGAC 1 cut(s) 431
FatI CATG 1 cut(s) 232
FblI GTMKAC 1 cut(s) 23
FokI GGATG 1 cut(s) 30
FspBI CTAG 1 cut(s) 341
HaeIII GGCC 2 cut(s) 62, 146
HapII CCGG 1 cut(s) 414
HgaI GACGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 1 cut(s) 236
HpaII CCGG 1 cut(s) 414
Hpy166II GTNNAC 2 cut(s) 24, 212
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 4 cut(s) 109, 233, 248, 320
Hpy8I GTNNAC 2 cut(s) 24, 212
HpyAV CCTTC 3 cut(s) 71, 254, 286
HpyCH4III ACNGT 2 cut(s) 70, 493
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 3 cut(s) 49, 115, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 420
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 3 cut(s) 205, 229, 346
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 5 cut(s) 104, 182, 261, 412, 427
LweI GCATC 2 cut(s) 77, 102
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 2 cut(s) 154, 368
MalI GATC 3 cut(s) 207, 231, 348
MboI GATC 3 cut(s) 205, 229, 346
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 449
MnlI CCTC 8 cut(s) 90, 93, 157, 171, 217, 247, 327, 453
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 415
MwoI GCNNNNNNNGC 1 cut(s) 100
NciI CCSGG 1 cut(s) 415
NdeII GATC 3 cut(s) 205, 229, 346
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 154, 368
PagI TCATGA 1 cut(s) 232
Ple19I CGATCG 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 60
PvuI CGATCG 1 cut(s) 208
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 3 cut(s) 205, 229, 346
Sau96I GGNCC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 415
SduI GDGCHC 1 cut(s) 214
SetI ASST 5 cut(s) 29, 82, 228, 423, 445
SfaNI GCATC 2 cut(s) 77, 102
Sse9I AATT 1 cut(s) 449
SsiI CCGC 1 cut(s) 150
SspI AATATT 1 cut(s) 302
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 2 cut(s) 70, 493
TaiI ACGT 1 cut(s) 423
TaqI TCGA 2 cut(s) 204, 321
TasI AATT 1 cut(s) 449
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 2 cut(s) 154, 368
Tsp45I GTSAC 2 cut(s) 154, 368
TspDTI ATGAA 2 cut(s) 249, 339
VneI GTGCAC 1 cut(s) 210
XapI RAATTY 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.