Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008734

Physical Location & Seq

Genomic Coordinates Forward (+)

12959532 .. 12960205

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTGTAACTTGTACTGTTTTTCTCATAGTGAAGAGCAATATCTCTCCGAGGACGTAGGCAGGTTTTTGCCGAACCTCGTAAATTTCTCGGTGTCTTTATTTCTTCTGAATCTCAGTTCCGCACTAACGAACGGGCCAAGGCACAACAATTGGTATCAGAGCATCGTTGGGGGCTTTGGTTCGTTGGAGGTCCAGATTTGTTGTTCACCATGGAATTTTCAGTTGAGCAGTTTAAAGGGAGAGGCGGTTTTGCTCTTGGTAAAGGAGAGTAATGGAAGCCTGAAGAAATGGAAGCCGTGTTTAGGGATGCTTGGATCAACTGCGAAAGTTAATGTTGAGGAAGAAGACAAAGGCCTCTTTCTTCTTACCTCACTTTCAGATTTGTACGAGAACCTTCAGGTGCAAGCTTCTTTGGTGTGGAATGATACACACAAGAGACCATGGATGATGGTGGGCACAAGACTGCTTAAGCTATTCAAGGTTGAAATCGTGGAAGAAAATTGGAAAGAGGATCTGAGAGAGACAGCAGGTTCGGATCCGGTTCCGGAGGCAAGGGTCCACAGTGCTACGGGTGCAAGGCCGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00380 ko00901 ko00950 ko00965 ko01100 ko01110 ko04726 ko04728 ko05030 ko05031 ko05034 map00350 map00360 map00380 map00901 map00950 map00965 map01100 map01110 map04726 map04728 map05030 map05031 map05034

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

196

Amino Acids

21.87

Weight (kDa)

5.6

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37510 AT2G37510
fragaria_vesca	FvH4_6g14291
malus_domestica	MD04G1122000.v1.1 MD05G1303700.v1.1 MD07G1026700.v1.1 MD11G1053600.v1.1 MD12G1138600.v1.1 MD15G1425700.v1.1 MD16G1185200.v1.1
prunus_persica	Prupe.6G250500_v2.0.a1
pyrus_communis	pycom01g12040 pycom04g11060 pycom12g13260
rosa_chinensis	RchiOBHm_Chr3g0467261
rosa_laevigata	RLG00000024513
rosa_roxburghii	Rroxscaffold_6G00413770
rosa_rugosa	Rorug03G0086300
rosa_samantha	Rh3AG134600 Rh3BG155900 Rh3CG155500 Rh3DG156700
rosa_wichuraiana	Rw3G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	51, 518
AccIII	TCCGGA	1 cut(s)	544
AciI	CCGC	2 cut(s)	120, 245
AclWI	GGATC	4 cut(s)	322, 519, 530, 543
AcsI	RAATTY	2 cut(s)	82, 214
AcuI	CTGAAG	2 cut(s)	302, 380
AfaI	GTAC	2 cut(s)	14, 386
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	478, 485
AluBI	AGCT	2 cut(s)	407, 472
AluI	AGCT	2 cut(s)	407, 472
Alw26I	GTCTC	2 cut(s)	430, 515
AlwI	GGATC	4 cut(s)	322, 519, 530, 543
Aor13HI	TCCGGA	1 cut(s)	544
AoxI	GGCC	3 cut(s)	134, 352, 578
ApoI	RAATTY	2 cut(s)	82, 214
ArsI	GACNNNNNNTTYG	2 cut(s)	514, 546
AspS9I	GGNCC	3 cut(s)	134, 190, 556
AsuC2I	CCSGG	1 cut(s)	582
AsuHPI	GGTGA	1 cut(s)	198
AvaII	GGWCC	2 cut(s)	190, 556
BaeGI	GKGCMC	1 cut(s)	458
BamHI	GGATCC	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	351
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	582
BcoDI	GTCTC	2 cut(s)	430, 515
BfrI	CTTAAG	1 cut(s)	467
BfuAI	ACCTGC	2 cut(s)	51, 518
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	2 cut(s)	190, 556
BmgT120I	GGNCC	3 cut(s)	134, 190, 556
BmiI	GGNNCC	3 cut(s)	537, 543, 557
BmrFI	CCNGG	1 cut(s)	582
BmsI	GCATC	2 cut(s)	171, 297
BpiI	GAAGAC	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	4 cut(s)	48, 137, 209, 440
BsaWI	WCCGGW	2 cut(s)	538, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	544
BseDI	CCNNGG	4 cut(s)	48, 137, 209, 440
BseGI	GGATG	2 cut(s)	312, 450
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	127, 506
BseSI	GKGCMC	1 cut(s)	458
BshFI	GGCC	3 cut(s)	136, 354, 580
BsiSI	CCGG	3 cut(s)	539, 545, 581
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	2 cut(s)	430, 515
BsnI	GGCC	3 cut(s)	136, 354, 580
Bso31I	GGTCTC	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp13I	TCCGGA	1 cut(s)	544
Bsp143I	GATC	3 cut(s)	314, 511, 535
Bsp19I	CCATGG	2 cut(s)	209, 440
BspACI	CCGC	2 cut(s)	120, 245
BspANI	GGCC	3 cut(s)	136, 354, 580
BspCNI	CTCAG	2 cut(s)	126, 507
BspEI	TCCGGA	1 cut(s)	544
BspLI	GGNNCC	3 cut(s)	537, 543, 557
BspMI	ACCTGC	2 cut(s)	51, 518
BspPI	GGATC	4 cut(s)	322, 519, 530, 543
BspQI	GCTCTTC	1 cut(s)	27
BspTI	CTTAAG	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	430
BssECI	CCNNGG	4 cut(s)	48, 137, 209, 440
BssMI	GATC	3 cut(s)	314, 511, 535
BssT1I	CCWWGG	3 cut(s)	137, 209, 440
Bst4CI	ACNGT	2 cut(s)	17, 563
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	113, 515
BstDSI	CCRYGG	2 cut(s)	209, 440
BstF5I	GGATG	2 cut(s)	312, 450
BstKTI	GATC	3 cut(s)	317, 514, 538
BstMAI	GTCTC	2 cut(s)	430, 515
BstMBI	GATC	3 cut(s)	314, 511, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	580
BstSLI	GKGCMC	1 cut(s)	458
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	2 cut(s)	511, 535
BstYI	RGATCY	2 cut(s)	511, 535
BsuRI	GGCC	3 cut(s)	136, 354, 580
BtgI	CCRYGG	2 cut(s)	209, 440
BtsCI	GGATG	2 cut(s)	312, 450
BtsIMutI	CAGTG	1 cut(s)	568
BveI	ACCTGC	2 cut(s)	51, 518
Cac8I	GCNNGC	1 cut(s)	405
Cfr13I	GGNCC	3 cut(s)	134, 190, 556
Csp6I	GTAC	2 cut(s)	13, 385
CviAII	CATG	2 cut(s)	210, 441
CviJI	RGCY	8 cut(s)	136, 174, 279, 295, 354, 407, 472, 580
CviKI_1	RGCY	8 cut(s)	136, 174, 279, 295, 354, 407, 472, 580
CviQI	GTAC	2 cut(s)	13, 385
DdeI	CTNAG	2 cut(s)	113, 515
DpnI	GATC	3 cut(s)	316, 513, 537
DpnII	GATC	3 cut(s)	314, 511, 535
DraI	TTTAAA	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	137, 209, 440
Eco147I	AGGCCT	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	190, 556
Eco57I	CTGAAG	2 cut(s)	302, 380
EcoT14I	CCWWGG	3 cut(s)	137, 209, 440
ErhI	CCWWGG	3 cut(s)	137, 209, 440
FaeI	CATG	2 cut(s)	213, 444
FaiI	YATR	3 cut(s)	27, 211, 442
FatI	CATG	2 cut(s)	209, 440
FokI	GGATG	2 cut(s)	319, 457
HaeIII	GGCC	3 cut(s)	136, 354, 580
HapII	CCGG	3 cut(s)	539, 545, 581
Hin1II	CATG	2 cut(s)	213, 444
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	3 cut(s)	539, 545, 581
HphI	GGTGA	1 cut(s)	198
Hpy166II	GTNNAC	2 cut(s)	206, 559
Hpy188I	TCNGA	6 cut(s)	49, 108, 159, 379, 516, 535
Hpy188III	TCNNGA	2 cut(s)	193, 545
Hpy8I	GTNNAC	2 cut(s)	206, 559
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	17, 563
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	403, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	2 cut(s)	113, 515
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	2 cut(s)	213, 444
Kpn2I	TCCGGA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	314, 511, 535
LguI	GCTCTTC	1 cut(s)	27
LpnPI	CCDG	7 cut(s)	46, 206, 293, 383, 513, 552, 558
LweI	GCATC	2 cut(s)	171, 297
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	3 cut(s)	316, 513, 537
MboI	GATC	3 cut(s)	314, 511, 535
MboII	GAAGA	7 cut(s)	44, 95, 295, 353, 353, 356, 506
MfeI	CAATTG	1 cut(s)	148
MflI	RGATCY	2 cut(s)	511, 535
MhlI	GDGCHC	1 cut(s)	458
MluCI	AATT	4 cut(s)	82, 148, 214, 499
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	9 cut(s)	43, 86, 181, 235, 331, 365, 379, 502, 541
MroI	TCCGGA	1 cut(s)	544
MseI	TTAA	3 cut(s)	233, 330, 468
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	3 cut(s)	539, 545, 581
MspR9I	CCNGG	1 cut(s)	582
MunI	CAATTG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	572
NciI	CCSGG	1 cut(s)	582
NcoI	CCATGG	2 cut(s)	209, 440
NdeII	GATC	3 cut(s)	314, 511, 535
NlaIII	CATG	2 cut(s)	213, 444
NlaIV	GGNNCC	3 cut(s)	537, 543, 557
PceI	AGGCCT	1 cut(s)	354
PciSI	GCTCTTC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	109
PspN4I	GGNNCC	3 cut(s)	537, 543, 557
PspPI	GGNCC	3 cut(s)	134, 190, 556
PsuI	RGATCY	2 cut(s)	511, 535
RsaI	GTAC	2 cut(s)	14, 386
RsaNI	GTAC	2 cut(s)	13, 385
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	233, 330, 468
Sau3AI	GATC	3 cut(s)	314, 511, 535
Sau96I	GGNCC	3 cut(s)	134, 190, 556
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	1 cut(s)	458
SfaNI	GCATC	2 cut(s)	171, 297
SinI	GGWCC	2 cut(s)	190, 556
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	4 cut(s)	82, 148, 214, 499
SseBI	AGGCCT	1 cut(s)	354
SsiI	CCGC	2 cut(s)	120, 245
StuI	AGGCCT	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	580
StyI	CCWWGG	3 cut(s)	137, 209, 440
TaaI	ACNGT	2 cut(s)	17, 563
TaiI	ACGT	1 cut(s)	57
TasI	AATT	4 cut(s)	82, 148, 214, 499
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	3 cut(s)	233, 330, 468
Tru9I	TTAA	3 cut(s)	233, 330, 468
TscAI	CASTG	1 cut(s)	568
TspRI	CASTG	1 cut(s)	568
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	190, 556
XapI	RAATTY	2 cut(s)	82, 214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.