Rw3G012740

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0008734
Physical Location & Seq
Forward (+)
12543962 .. 12545217
1256 bp
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UTR
Exon/CDS
Intron
Rw3G012740.1

Sequence Viewer

Length: 423 bp
ATGGCGTTCATGTCTAGCTTCGGTCGCGTTCTTGGCGGATCGGCATCTGCTCTTCCATCCCAATTCGCTGCCATTCGTCACAATACAACCCTCACATCCCCTAAGCTATTCATCAGCGGACTTTCGAGATTAACAACTGATGAAAAACTTAAGCAGACGTTTTCTGAATTTGGGCAGATTGAGCAGGCAAAAGTGATAACCGATAGGGCAACTGGAAGATCAAAGGGGTTCGCTTTCATTACATACTCAACGATTGAAGAAGCTGAGAAGGCAAAAGAAGGAATGAATGGCAAGTTCTTAGATGGGTGGGTCATTTTCGTTGACCCTGCCAAGCCTAGGGAGTATAGACCCCCACCTCAAGCACAGCAAGAGTCTTCTGATAATGGTTTCAAAGTAAACAAGACTATTGGATGGTGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

140

Amino Acids

15.39

Weight (kDa)

9.33

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 36 - 102 2.1e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AciI CCGC 2 cut(s) 36, 117
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 336
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 257, 391
AluBI AGCT 3 cut(s) 18, 106, 263
AluI AGCT 3 cut(s) 18, 106, 263
AlwI GGATC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 167
AspA2I CCTAGG 1 cut(s) 335
AvrII CCTAGG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 55
BccI CCATC 3 cut(s) 64, 296, 405
BfaI CTAG 2 cut(s) 15, 336
BfrI CTTAAG 1 cut(s) 149
BisI GCNGC 1 cut(s) 69
BlnI CCTAGG 1 cut(s) 335
BlsI GCNGC 1 cut(s) 70
BmsI GCATC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 3 cut(s) 56, 95, 416
BseJI GATNNNNATC 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 27
Bsh1285I CGRYCG 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 336
Bsp143I GATC 2 cut(s) 38, 218
BspACI CCGC 2 cut(s) 36, 117
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 27
BspPI GGATC 1 cut(s) 46
BspQI GCTCTTC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 2 cut(s) 38, 218
BssT1I CCWWGG 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 3 cut(s) 102, 264, 298
BstF5I GGATG 3 cut(s) 56, 95, 416
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 2 cut(s) 41, 221
BstMBI GATC 2 cut(s) 38, 218
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 4 cut(s) 24, 33, 181, 269
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 366
BtsCI GGATG 3 cut(s) 56, 95, 416
Cac8I GCNNGC 1 cut(s) 186
CviAII CATG 1 cut(s) 10
CviJI RGCY 4 cut(s) 18, 106, 263, 334
CviKI_1 RGCY 4 cut(s) 18, 106, 263, 334
DdeI CTNAG 3 cut(s) 102, 264, 298
DpnI GATC 2 cut(s) 40, 220
DpnII GATC 2 cut(s) 38, 218
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 1 cut(s) 13
FaiI YATR 3 cut(s) 11, 244, 345
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 2 cut(s) 43, 82
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 15, 336
GluI GCNGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 13
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 1 cut(s) 371
Hpy166II GTNNAC 2 cut(s) 322, 397
Hpy188I TCNGA 2 cut(s) 166, 379
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 2 cut(s) 322, 397
HpyAV CCTTC 2 cut(s) 262, 272
HpyCH4IV ACGT 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 33, 181, 269
HpyF3I CTNAG 3 cut(s) 102, 264, 298
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 2 cut(s) 38, 218
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 3 cut(s) 170, 198, 339
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 53
MaeI CTAG 2 cut(s) 15, 336
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 40, 220
MboI GATC 2 cut(s) 38, 218
MboII GAAGA 4 cut(s) 44, 228, 269, 366
MluCI AATT 2 cut(s) 62, 167
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 2 cut(s) 101, 366
MseI TTAA 2 cut(s) 131, 150
MspA1I CMGCKG 1 cut(s) 117
MspCI CTTAAG 1 cut(s) 149
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 4 cut(s) 24, 33, 181, 269
NdeII GATC 2 cut(s) 38, 218
NlaIII CATG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 131, 150
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 38, 218
SchI GAGTC 1 cut(s) 380
SetI ASST 5 cut(s) 20, 108, 161, 265, 358
SfaNI GCATC 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 149, 357
SmoI CTYRAG 2 cut(s) 149, 357
Sse9I AATT 2 cut(s) 62, 167
SsiI CCGC 2 cut(s) 36, 117
SspMI CTAG 2 cut(s) 15, 336
StyI CCWWGG 1 cut(s) 335
TaiI ACGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 125
TaqII GACCGA 1 cut(s) 11
TasI AATT 2 cut(s) 62, 167
Tru1I TTAA 2 cut(s) 131, 150
Tru9I TTAA 2 cut(s) 131, 150
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 4 cut(s) 100, 156, 226, 299
Vha464I CTTAAG 1 cut(s) 149
XapI RAATTY 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 335
XspI CTAG 2 cut(s) 15, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.