AT2G38170

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
15989083 .. 15993326
4244 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38170.2

Sequence Viewer

Length: 1392 bp
ATGGCGGGAATCGTGACAGAGCCGTGGTCAGTAGCTGAGAACGGAAACCCAAGCATAACGGCGAAAGGATCGAGCAGAGAACTAAGACTTGGAAGAACCGCTCACAACATGTCTTCTTCTTCTTTGAGGAAAAAATCAGACCTCCGAGTGATTCAGAAGGTTCCATACAAAGGTCTTAAAGATTTTCTCTCTAATCTCCAAGAAGTCATTCTCGGAACAAAGCTTGCCATTCTTTTTCCGGCCATTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAGCCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGAGTCAGCTTTTTGACAGAGCAACTAGCTTTCTACACCGGTCCTACATTGGGTGGTCTATTGAACGCAACGTGTGGAAACGCGACTGAATTGATAATCGCGATTCTTGCTTTGACCAATAACAAAGTCGCAGTGGTGAAATATTCGCTGCTAGGTTCGATTTTGTCGAACCTTTTATTGGTTCTAGGGACTTCACTCTTCTGTGGAGGAATCGCTAATATCCGAAGGGAACAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTACTTCTACTGGGTTTCTTGTGTCACTTGCTGCCATTGTTGGTGGGATACTTGAAAAACGGAGAGGCTTCGGCTGCTGTTTTGTCCGACATGCAACTGAGTATATCGCGAGGCTTCAGTATTGTTATGTTGATCAGCTACATTGCATATCTTGTTTTCCAACTGTGGACTCACCGCCAATTGTTCGATGCACAAGAACAGGAAGATGAGTATGATGACGATGTGGAGCAAGAAACCGCGGTGATTAGTTTTTGGAGCGGTTTTGCATGGTTGGTTGGGATGACACTCGTTATCGCATTGCTATCGGAGTATGTTGTAGCCACGATTGAGGAAGCATCGGATAAATGGAACTTATCAGTGAGTTTCATAAGCATCATATTGCTTCCTATTGTTGGAAATGCAGCTGAACATGCTGGAGCCGTTATTTTTGCCTTTAAGAACAAGCTTGACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTCGTTGTCCCCTTGACCATCATCGTGGCGTGGATTTTGGGAATTAATATGGATCTCAATTTTGGTCCCCTCGAAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTTCACATTACAGGATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCTTGCTTTGCTATTTCATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGAAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTGCAACAGGAGGAGGAGTTTTCTCATCTTAA

Protein Analysis

463

Amino Acids

50.18

Weight (kDa)

5.84

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 96 - 257 1.1e-20 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 288 - 352 1.6e-06 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 101, 861
AccI GTMKAC 1 cut(s) 1296
AccII CGCG 4 cut(s) 416, 434, 712, 842
AciI CCGC 8 cut(s) 5, 99, 252, 568, 778, 840, 842, 861
AclWI GGATC 2 cut(s) 76, 1158
AcoI YGGCCR 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 703
AcyI GRCGYC 1 cut(s) 276
AfiI CCNNNNNNNGG 4 cut(s) 170, 383, 511, 995
AflIII ACRYGT 2 cut(s) 108, 404
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 2 cut(s) 397, 658
AjuI GAANNNNNNNTTGG 6 cut(s) 72, 104, 192, 224, 494, 526
AloI GAACNNNNNNTCC 2 cut(s) 554, 586
AluBI AGCT 8 cut(s) 35, 223, 306, 342, 362, 741, 1007, 1048
AluI AGCT 8 cut(s) 35, 223, 306, 342, 362, 741, 1007, 1048
AlwI GGATC 2 cut(s) 76, 1158
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 4 cut(s) 481, 634, 677, 1004
AseI ATTAAT 1 cut(s) 1143
AsiGI ACCGGT 1 cut(s) 371
Asp700I GAANNNNTTC 2 cut(s) 207, 599
AspS9I GGNCC 3 cut(s) 374, 1163, 1252
AsuHPI GGTGA 3 cut(s) 481, 767, 856
AvaII GGWCC 3 cut(s) 374, 1163, 1252
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 4 cut(s) 468, 621, 664, 1016
BccI CCATC 3 cut(s) 1124, 1217, 1289
BceAI ACGGC 3 cut(s) 7, 75, 1007
BcgI CGANNNNNNTGC 2 cut(s) 888, 922
BciVI GTATCC 1 cut(s) 644
BclI TGATCA 1 cut(s) 735
BfaI CTAG 4 cut(s) 311, 359, 485, 518
BfuI GTATCC 1 cut(s) 644
BisI GCNGC 5 cut(s) 252, 482, 635, 678, 1005
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 5 cut(s) 253, 483, 636, 679, 1006
Bme18I GGWCC 3 cut(s) 374, 1163, 1252
BmgT120I GGNCC 3 cut(s) 374, 1163, 1252
BmiI GGNNCC 3 cut(s) 162, 1021, 1165
BmrI ACTGGG 1 cut(s) 623
BmsI GCATC 3 cut(s) 781, 947, 984
BmuI ACTGGG 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 1038
Bpu1102I GCTNAGC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 3 cut(s) 23, 287, 840
BsaWI WCCGGW 2 cut(s) 371, 576
BsaXI ACNNNNNCTCC 2 cut(s) 1362, 1392
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 383, 511, 995
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 3 cut(s) 618, 1180, 1254
Bse3DI GCAATG 2 cut(s) 744, 899
BseDI CCNNGG 3 cut(s) 23, 287, 840
BseGI GGATG 2 cut(s) 888, 1228
BseLI CCNNNNNNNGG 4 cut(s) 170, 383, 511, 995
BseMI GCAATG 2 cut(s) 744, 899
BseMII CTCAG 4 cut(s) 27, 321, 692, 1100
BseNI ACTGG 3 cut(s) 618, 1180, 1254
BseRI GAGGAG 2 cut(s) 1386, 1389
BseXI GCAGC 4 cut(s) 468, 621, 664, 1016
Bsh1236I CGCG 4 cut(s) 416, 434, 712, 842
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 1 cut(s) 242
BshTI ACCGGT 1 cut(s) 371
BsiEI CGRYCG 1 cut(s) 577
BsiSI CCGG 3 cut(s) 239, 372, 577
BslFI GGGAC 5 cut(s) 535, 1091, 1149, 1260, 1347
BslI CCNNNNNNNGG 4 cut(s) 170, 383, 511, 995
BsmFI GGGAC 5 cut(s) 535, 1091, 1149, 1260, 1347
BsnI GGCC 1 cut(s) 242
Bsp143I GATC 3 cut(s) 68, 735, 1150
Bsp1720I GCTNAGC 1 cut(s) 330
Bsp68I TCGCGA 2 cut(s) 434, 712
BspACI CCGC 8 cut(s) 5, 99, 252, 568, 778, 840, 842, 861
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 4 cut(s) 28, 322, 693, 1099
BspFNI CGCG 4 cut(s) 416, 434, 712, 842
BspLI GGNNCC 3 cut(s) 162, 1021, 1165
BspPI GGATC 2 cut(s) 76, 1158
BsrBI CCGCTC 2 cut(s) 101, 861
BsrDI GCAATG 2 cut(s) 744, 899
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 3 cut(s) 618, 1180, 1254
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 3 cut(s) 23, 287, 840
BssMI GATC 3 cut(s) 68, 735, 1150
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 768
Bst6I CTCTTC 1 cut(s) 536
BstACI GRCGYC 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 225, 308
BstDEI CTNAG 6 cut(s) 36, 83, 302, 330, 701, 1086
BstDSI CCRYGG 2 cut(s) 23, 840
BstF5I GGATG 2 cut(s) 888, 1228
BstFNI CGCG 4 cut(s) 416, 434, 712, 842
BstKTI GATC 3 cut(s) 71, 738, 1153
BstMBI GATC 3 cut(s) 68, 735, 1150
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 4 cut(s) 248, 440, 677, 1013
BstNSI RCATGY 3 cut(s) 112, 697, 1016
BstUI CGCG 4 cut(s) 416, 434, 712, 842
BstV1I GCAGC 4 cut(s) 468, 621, 664, 1016
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 1150
BstXI CCANNNNNNTGG 2 cut(s) 1123, 1330
BstYI RGATCY 1 cut(s) 1150
BsuI GTATCC 1 cut(s) 644
BsuRI GGCC 1 cut(s) 242
BtgI CCRYGG 2 cut(s) 23, 840
BtgZI GCGATG 1 cut(s) 1358
BtsCI GGATG 2 cut(s) 888, 1228
BtsI GCAGTG 2 cut(s) 471, 1359
BtsIMutI CAGTG 3 cut(s) 471, 966, 1359
BtuMI TCGCGA 2 cut(s) 434, 712
Cac8I GCNNGC 2 cut(s) 225, 308
CaiI CAGNNNCTG 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 3 cut(s) 374, 1163, 1252
Cfr42I CCGCGG 1 cut(s) 843
CseI GACGC 1 cut(s) 265
CspAI ACCGGT 1 cut(s) 371
CviAII CATG 5 cut(s) 109, 694, 870, 1013, 1240
DdeI CTNAG 6 cut(s) 36, 83, 302, 330, 701, 1086
DpnI GATC 3 cut(s) 70, 737, 1152
DpnII GATC 3 cut(s) 68, 735, 1150
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 287
Eco47I GGWCC 3 cut(s) 374, 1163, 1252
Eco57I CTGAAG 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 5 cut(s) 112, 697, 873, 1016, 1243
FaqI GGGAC 5 cut(s) 535, 1091, 1149, 1260, 1347
FatI CATG 5 cut(s) 108, 693, 869, 1012, 1239
FbaI TGATCA 1 cut(s) 735
FblI GTMKAC 1 cut(s) 1296
Fnu4HI GCNGC 5 cut(s) 252, 482, 635, 678, 1005
FokI GGATG 2 cut(s) 895, 1235
Fsp4HI GCNGC 5 cut(s) 252, 482, 635, 678, 1005
FspBI CTAG 4 cut(s) 311, 359, 485, 518
GluI GCNGC 5 cut(s) 252, 482, 635, 678, 1005
GsuI CTGGAG 1 cut(s) 1038
HaeIII GGCC 1 cut(s) 242
HapII CCGG 3 cut(s) 239, 372, 577
HgaI GACGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 5 cut(s) 112, 697, 873, 1016, 1243
HincII GTYRAC 1 cut(s) 1297
HindII GTYRAC 1 cut(s) 1297
HindIII AAGCTT 2 cut(s) 221, 1046
HinfI GANTC 7 cut(s) 9, 151, 336, 436, 543, 772, 1084
HpaII CCGG 3 cut(s) 239, 372, 577
HphI GGTGA 3 cut(s) 481, 767, 856
Hpy166II GTNNAC 4 cut(s) 595, 771, 1212, 1297
Hpy188I TCNGA 9 cut(s) 139, 146, 156, 215, 557, 691, 910, 943, 1089
Hpy188III TCNNGA 3 cut(s) 13, 433, 711
Hpy8I GTNNAC 4 cut(s) 595, 771, 1212, 1297
Hpy99I CGWCG 1 cut(s) 1298
HpyAV CCTTC 3 cut(s) 151, 552, 1237
HpyCH4III ACNGT 1 cut(s) 768
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 7 cut(s) 264, 697, 749, 794, 869, 1004, 1364
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 440, 677, 1013
HpyF3I CTNAG 6 cut(s) 36, 83, 302, 330, 701, 1086
HpySE526I ACGT 1 cut(s) 404
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 5 cut(s) 112, 697, 873, 1016, 1243
Ksp22I TGATCA 1 cut(s) 735
KspI CCGCGG 1 cut(s) 843
Kzo9I GATC 3 cut(s) 68, 735, 1150
LmnI GCTCC 3 cut(s) 829, 858, 1019
Lsp1109I GCAGC 4 cut(s) 468, 621, 664, 1016
LweI GCATC 3 cut(s) 781, 947, 984
MaeI CTAG 4 cut(s) 311, 359, 485, 518
MaeII ACGT 1 cut(s) 404
MaeIII GTNAC 3 cut(s) 13, 626, 1357
MalI GATC 3 cut(s) 70, 737, 1152
MbiI CCGCTC 2 cut(s) 101, 861
MboI GATC 3 cut(s) 68, 735, 1150
MboII GAAGA 8 cut(s) 105, 105, 108, 111, 523, 592, 818, 1282
MfeI CAATTG 1 cut(s) 782
MflI RGATCY 1 cut(s) 1150
MluCI AATT 4 cut(s) 422, 782, 1140, 1156
MlyI GAGTC 3 cut(s) 345, 766, 1078
MmeI TCCRAC 3 cut(s) 714, 787, 976
MroXI GAANNNNTTC 2 cut(s) 207, 599
MseI TTAA 4 cut(s) 177, 1038, 1143, 1390
MslI CAYNNNNRTG 1 cut(s) 1121
MspA1I CMGCKG 3 cut(s) 568, 842, 1007
MspI CCGG 3 cut(s) 239, 372, 577
MunI CAATTG 1 cut(s) 782
MvnI CGCG 4 cut(s) 416, 434, 712, 842
MwoI GCNNNNNNNGC 4 cut(s) 248, 440, 677, 1013
NdeII GATC 3 cut(s) 68, 735, 1150
NlaIII CATG 5 cut(s) 112, 697, 873, 1016, 1243
NlaIV GGNNCC 3 cut(s) 162, 1021, 1165
NmuCI GTSAC 3 cut(s) 13, 626, 1357
NruI TCGCGA 2 cut(s) 434, 712
NspI RCATGY 3 cut(s) 112, 697, 1016
PciI ACATGT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 497
PdmI GAANNNNTTC 2 cut(s) 207, 599
PfeI GAWTC 4 cut(s) 9, 151, 436, 543
PinAI ACCGGT 1 cut(s) 371
PkrI GCNGC 5 cut(s) 253, 483, 636, 679, 1006
PleI GAGTC 3 cut(s) 344, 766, 1078
PpsI GAGTC 3 cut(s) 344, 766, 1078
PscI ACATGT 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 1143
PspN4I GGNNCC 3 cut(s) 162, 1021, 1165
PspPI GGNCC 3 cut(s) 374, 1163, 1252
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 1 cut(s) 1150
PvuII CAGCTG 1 cut(s) 1007
RruI TCGCGA 2 cut(s) 434, 712
RseI CAYNNNNRTG 1 cut(s) 1121
SacII CCGCGG 1 cut(s) 843
SalI GTCGAC 1 cut(s) 1295
SaqAI TTAA 4 cut(s) 177, 1038, 1143, 1390
SatI GCNGC 5 cut(s) 252, 482, 635, 678, 1005
Sau3AI GATC 3 cut(s) 68, 735, 1150
Sau96I GGNCC 3 cut(s) 374, 1163, 1252
SchI GAGTC 3 cut(s) 345, 766, 1078
SfaNI GCATC 3 cut(s) 781, 947, 984
Sfr303I CCGCGG 1 cut(s) 843
SgrBI CCGCGG 1 cut(s) 843
SinI GGWCC 3 cut(s) 374, 1163, 1252
SmiMI CAYNNNNRTG 1 cut(s) 1121
Sse9I AATT 4 cut(s) 422, 782, 1140, 1156
SsiI CCGC 8 cut(s) 5, 99, 252, 568, 778, 840, 842, 861
SspI AATATT 1 cut(s) 476
SspMI CTAG 4 cut(s) 311, 359, 485, 518
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 768
TaiI ACGT 1 cut(s) 407
TaqI TCGA 7 cut(s) 71, 491, 500, 573, 789, 1170, 1296
TasI AATT 4 cut(s) 422, 782, 1140, 1156
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 4 cut(s) 9, 151, 436, 543
Tru1I TTAA 4 cut(s) 177, 1038, 1143, 1390
Tru9I TTAA 4 cut(s) 177, 1038, 1143, 1390
TscAI CASTG 3 cut(s) 471, 966, 1366
TseFI GTSAC 3 cut(s) 13, 626, 1357
TseI GCWGC 4 cut(s) 481, 634, 677, 1004
Tsp45I GTSAC 3 cut(s) 13, 626, 1357
TspDTI ATGAA 4 cut(s) 958, 1256, 1261, 1361
TspGWI ACGGA 2 cut(s) 57, 678
TspRI CASTG 3 cut(s) 471, 966, 1366
VpaK11BI GGWCC 3 cut(s) 374, 1163, 1252
VspI ATTAAT 1 cut(s) 1143
XceI RCATGY 3 cut(s) 112, 697, 1016
XmiI GTMKAC 1 cut(s) 1296
XmnI GAANNNNTTC 2 cut(s) 207, 599
XspI CTAG 4 cut(s) 311, 359, 485, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.