FvH4_6g11493

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
6903474 .. 6906841
3368 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11493.t1

Sequence Viewer

Length: 1344 bp
ATGGCTTCGAACCAAGCAGAACCATGGCTACTGGAAAATGGTAACCCCAAGGTCCTAACCAAGGAGCACCGGAAGAAGTCCGCTCACAACAGGTCCTCCTCTTCACTGAGGAAGAAGTCCGATCGCACCCTCGTCTCGAAAATTCCGTGTATCCTTCTTAGACAATTCCTGGCCAATCTTCAGGAGGTTATATTGGGTACCAAATTGTCAGTGTTATTCCCAGCCATCCCGGCAGCCATTGTGGCTGACTCTGTTGGCTTTGGAAGACCTTGGGTCTTCGCTCTGAGCCTAATTGGACTAATGCCACTAGCTGAACGTGTTAGTTTTCTCACAGAACAAATTGCTTATTTCACTGGTCCAACAGTGGGAGGGCTTCTTAACGCGACATGTGGCAACGCCACCGAGCTGATTATAGCCATCTTTGCTCTGAGCCAGCACAAAATCGCAGTGGTGAAATACTCTCTTCTGGGTTCGATACTCTCCAACCTTCTCTTAGTCCTCGGCACTTCTCTCTTCTGCGGTGGCATCGCTAACCTCAGAATTGAACAAAAATATGACAGAAGACAAGCTGATGTCAACTCTTTGATGCTGCTGCTGGCTCTGCTGTGTCACTTGCTGCCACTGCTCTTCACGTTCGCAGCAGAAAAGTCCATGGCCACCGCGGTCCCCACTCTCCATCTGTCGAGAGCTAGCAGCGTTGTCATGATGATTGCTTACGCTGCCTACATTGTCTTCCAGCTCTGGACGCACCGCGAGTTATTCGAAGCTCAGGAATCGGAGGATGATGATGATGTTGCCGAGGAGGAAGAGGCTGTGATTGGATTCTGGAGTGGTTTTGTGTGGTTGGTTGGAATGACTGGAGTTATAGCTTTGTTGTCTGAGTATGTCGTCGGAACGATTGAGGAAGCATCCGATTCTTGGGGGTTGTCTGTGAGCTTCATCAGCATAATCTTGCTGCCTATTGTTGGCAATGCAGCAGAACATGCAGGAGCTGTCATTTTTGCTTTCAAGAACAAGCTGGATATAACTCTCGGTGTCGCATTGGGTTCTGCAACTCAAATCGCCATGTTTGTGGTTCCATTTTGTGTCATCGTAGCTTGGATTATGGGTATTGACATGGATCTCAATTTCAGTCTCCTTGAGACTGGCTCTCTAGCTTTATCAATCCTAGCCACTGCCTTCACATTGCAGGATGGCACTTCTCACTACCTGAAAGGACTGATTCTGCTGCTGTGCTACATTATTATTGGAGCCTGTTTTTTTGTATCTAACGCGACACTTAATGCACCAAACACTGTCAATCTGGGACTTAAAACATCAACTGGTTCAGTCTTTGGAGCTTAA

Protein Analysis

448

Amino Acids

48.19

Weight (kDa)

5.65

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 91 - 248 1.6e-22 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 278 - 416 1.3e-18 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 83
AccII CGCG 4 cut(s) 383, 662, 753, 1274
AciI CCGC 5 cut(s) 81, 519, 660, 662, 751
AclWI GGATC 1 cut(s) 1128
AcoI YGGCCR 2 cut(s) 171, 654
AcsI RAATTY 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 4 cut(s) 61, 365, 918, 965
AflIII ACRYGT 2 cut(s) 316, 386
AgsI TTSAA 2 cut(s) 545, 1009
AhdI GACNNNNNGTC 1 cut(s) 272
AjnI CCWGG 1 cut(s) 168
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 3 cut(s) 139, 1136, 1139
AlwI GGATC 1 cut(s) 1128
AlwNI CAGNNNCTG 1 cut(s) 992
AoxI GGCC 2 cut(s) 171, 654
ApoI RAATTY 1 cut(s) 141
Asp718I GGTACC 1 cut(s) 197
AspS9I GGNCC 4 cut(s) 52, 93, 356, 664
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 463
AsuII TTCGAA 2 cut(s) 8, 762
AsuNHI GCTAGC 1 cut(s) 689
AvaII GGWCC 4 cut(s) 52, 93, 356, 664
BalI TGGCCA 2 cut(s) 173, 656
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 4 cut(s) 268, 271, 568, 724
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 4 cut(s) 233, 425, 684, 1187
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 161
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 3 cut(s) 139, 1136, 1139
BfaI CTAG 4 cut(s) 308, 690, 1154, 1169
BfuI GTATCC 1 cut(s) 161
BglI GCCNNNNNGGC 2 cut(s) 230, 242
Bme1390I CCNGG 2 cut(s) 170, 230
Bme18I GGWCC 4 cut(s) 52, 93, 356, 664
BmeRI GACNNNNNGTC 1 cut(s) 272
BmgT120I GGNCC 4 cut(s) 52, 93, 356, 664
BmiI GGNNCC 4 cut(s) 199, 666, 1077, 1252
BmrFI CCNGG 2 cut(s) 170, 230
BmsI GCATC 3 cut(s) 534, 576, 917
BmtI GCTAGC 1 cut(s) 693
BpiI GAAGAC 4 cut(s) 268, 271, 568, 724
BplI GAGNNNNNCTC 2 cut(s) 1133, 1165
BpmI CTGGAG 2 cut(s) 847, 879
Bpu10I CCTNAGC 1 cut(s) 768
Bpu14I TTCGAA 2 cut(s) 8, 762
BpuEI CTTGAG 1 cut(s) 1160
BpuMI CCSGG 1 cut(s) 230
BsaJI CCNNGG 8 cut(s) 23, 48, 60, 269, 499, 651, 660, 798
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 365, 918, 965
Bse1I ACTGG 5 cut(s) 36, 358, 862, 1150, 1327
Bse3DI GCAATG 2 cut(s) 976, 1184
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 8 cut(s) 23, 48, 60, 269, 499, 651, 660, 798
BseGI GGATG 4 cut(s) 225, 787, 908, 1198
BseLI CCNNNNNNNGG 4 cut(s) 61, 365, 918, 965
BseMI GCAATG 2 cut(s) 976, 1184
BseMII CTCAG 6 cut(s) 98, 275, 419, 550, 782, 870
BseNI ACTGG 5 cut(s) 36, 358, 862, 1150, 1327
BseRI GAGGAG 2 cut(s) 88, 815
BseYI CCCAGC 1 cut(s) 220
Bsh1236I CGCG 4 cut(s) 383, 662, 753, 1274
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 2 cut(s) 173, 656
BshNI GGYRCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 2 cut(s) 70, 230
BslFI GGGAC 2 cut(s) 650, 1320
BslI CCNNNNNNNGG 4 cut(s) 61, 365, 918, 965
BsmAI GTCTC 3 cut(s) 139, 1136, 1139
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 650, 1320
BsnI GGCC 2 cut(s) 173, 656
Bsp119I TTCGAA 2 cut(s) 8, 762
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 121, 1120
Bsp19I CCATGG 2 cut(s) 23, 651
BspACI CCGC 5 cut(s) 81, 519, 660, 662, 751
BspANI GGCC 2 cut(s) 173, 656
BspCNI CTCAG 6 cut(s) 99, 276, 420, 549, 781, 871
BspFNI CGCG 4 cut(s) 383, 662, 753, 1274
BspHI TCATGA 1 cut(s) 702
BspLI GGNNCC 4 cut(s) 199, 666, 1077, 1252
BspOI GCTAGC 1 cut(s) 693
BspPI GGATC 1 cut(s) 1128
BspQI GCTCTTC 1 cut(s) 632
BspT104I TTCGAA 2 cut(s) 8, 762
BspT107I GGYRCC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 83
BsrDI GCAATG 2 cut(s) 976, 1184
BsrI ACTGG 5 cut(s) 36, 358, 862, 1150, 1327
BssECI CCNNGG 8 cut(s) 23, 48, 60, 269, 499, 651, 660, 798
BssMI GATC 2 cut(s) 121, 1120
BssT1I CCWWGG 5 cut(s) 23, 48, 60, 269, 651
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 364, 1297
Bst6I CTCTTC 5 cut(s) 106, 468, 518, 632, 801
BstAPI GCANNNNNTGC 1 cut(s) 983
BstBI TTCGAA 2 cut(s) 8, 762
BstC8I GCNNGC 3 cut(s) 434, 597, 691
BstDEI CTNAG 8 cut(s) 107, 158, 284, 428, 493, 536, 768, 879
BstDSI CCRYGG 3 cut(s) 23, 651, 660
BstEII GGTNACC 1 cut(s) 41
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 4 cut(s) 225, 787, 908, 1198
BstFNI CGCG 4 cut(s) 383, 662, 753, 1274
BstKTI GATC 2 cut(s) 124, 1123
BstMAI GTCTC 3 cut(s) 139, 1136, 1139
BstMBI GATC 2 cut(s) 121, 1120
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 9 cut(s) 230, 242, 422, 601, 622, 719, 745, 942, 983
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 2 cut(s) 390, 986
BstPI GGTNACC 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 168, 228
BstUI CGCG 4 cut(s) 383, 662, 753, 1274
BstV2I GAAGAC 4 cut(s) 268, 271, 568, 724
BstX2I RGATCY 1 cut(s) 1120
BstXI CCANNNNNNTGG 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 1120
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 2 cut(s) 173, 656
BtgI CCRYGG 3 cut(s) 23, 651, 660
BtgZI GCGATG 1 cut(s) 511
BtsCI GGATG 4 cut(s) 225, 787, 908, 1198
BtsI GCAGTG 3 cut(s) 453, 620, 1173
BtsIMutI CAGTG 8 cut(s) 104, 216, 351, 369, 453, 620, 1173, 1293
Cac8I GCNNGC 3 cut(s) 434, 597, 691
CaiI CAGNNNCTG 1 cut(s) 992
CciI TCATGA 1 cut(s) 702
Cfr13I GGNCC 4 cut(s) 52, 93, 356, 664
Cfr42I CCGCGG 1 cut(s) 663
CseI GACGC 1 cut(s) 754
Csp6I GTAC 1 cut(s) 198
CviAII CATG 7 cut(s) 24, 387, 652, 703, 983, 1066, 1117
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 8 cut(s) 107, 158, 284, 428, 493, 536, 768, 879
DpnI GATC 2 cut(s) 123, 1122
DpnII GATC 2 cut(s) 121, 1120
DriI GACNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 2 cut(s) 171, 654
Eam1104I CTCTTC 5 cut(s) 106, 468, 518, 632, 801
Eam1105I GACNNNNNGTC 1 cut(s) 272
EarI CTCTTC 5 cut(s) 106, 468, 518, 632, 801
Eco130I CCWWGG 5 cut(s) 23, 48, 60, 269, 651
Eco47I GGWCC 4 cut(s) 52, 93, 356, 664
Eco57I CTGAAG 1 cut(s) 164
Eco91I GGTNACC 1 cut(s) 41
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoO109I RGGNCCY 2 cut(s) 52, 93
EcoO65I GGTNACC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 5 cut(s) 23, 48, 60, 269, 651
ErhI CCWWGG 5 cut(s) 23, 48, 60, 269, 651
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 7 cut(s) 27, 390, 655, 706, 986, 1069, 1120
FaqI GGGAC 2 cut(s) 650, 1320
FatI CATG 7 cut(s) 23, 386, 651, 702, 982, 1065, 1116
FokI GGATG 4 cut(s) 212, 794, 895, 1205
FspBI CTAG 4 cut(s) 308, 690, 1154, 1169
GsaI CCCAGC 1 cut(s) 224
GsuI CTGGAG 2 cut(s) 847, 879
HaeIII GGCC 2 cut(s) 173, 656
HapII CCGG 2 cut(s) 70, 230
HgaI GACGC 1 cut(s) 754
Hin1II CATG 7 cut(s) 27, 390, 655, 706, 986, 1069, 1120
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 5 cut(s) 248, 773, 822, 914, 1222
HpaII CCGG 2 cut(s) 70, 230
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 8 cut(s) 121, 285, 429, 539, 778, 880, 893, 913
Hpy188III TCNNGA 8 cut(s) 136, 182, 684, 703, 742, 770, 826, 1009
Hpy8I GTNNAC 1 cut(s) 577
Hpy99I CGWCG 1 cut(s) 893
HpyAV CCTTC 3 cut(s) 164, 497, 1189
HpyCH4III ACNGT 2 cut(s) 364, 1297
HpyCH4IV ACGT 2 cut(s) 316, 632
HpyCH4V TGCA 5 cut(s) 974, 986, 1052, 1189, 1286
HpyF10VI GCNNNNNNNGC 9 cut(s) 230, 242, 422, 601, 622, 719, 745, 942, 983
HpyF3I CTNAG 8 cut(s) 107, 158, 284, 428, 493, 536, 768, 879
HpySE526I ACGT 2 cut(s) 316, 632
Hsp92II CATG 7 cut(s) 27, 390, 655, 706, 986, 1069, 1120
KpnI GGTACC 1 cut(s) 201
KspI CCGCGG 1 cut(s) 663
Kzo9I GATC 2 cut(s) 121, 1120
LguI GCTCTTC 1 cut(s) 632
LmnI GCTCC 4 cut(s) 64, 989, 1250, 1337
LweI GCATC 3 cut(s) 534, 576, 917
MaeI CTAG 4 cut(s) 308, 690, 1154, 1169
MaeII ACGT 2 cut(s) 316, 632
MaeIII GTNAC 2 cut(s) 41, 608
MalI GATC 2 cut(s) 123, 1122
MbiI CCGCTC 1 cut(s) 83
MboI GATC 2 cut(s) 121, 1120
MflI RGATCY 1 cut(s) 1120
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 2 cut(s) 173, 656
MluCI AATT 7 cut(s) 141, 164, 203, 291, 339, 540, 1126
MluNI TGGCCA 2 cut(s) 173, 656
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 4 cut(s) 383, 507, 829, 871
Mox20I TGGCCA 2 cut(s) 173, 656
MscI TGGCCA 2 cut(s) 173, 656
MseI TTAA 4 cut(s) 378, 1281, 1311, 1342
MslI CAYNNNNRTG 1 cut(s) 1070
Msp20I TGGCCA 2 cut(s) 173, 656
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 2 cut(s) 70, 230
MspR9I CCNGG 2 cut(s) 170, 230
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 4 cut(s) 383, 662, 753, 1274
MwoI GCNNNNNNNGC 9 cut(s) 230, 242, 422, 601, 622, 719, 745, 942, 983
NciI CCSGG 1 cut(s) 230
NcoI CCATGG 2 cut(s) 23, 651
NdeII GATC 2 cut(s) 121, 1120
NheI GCTAGC 1 cut(s) 689
NlaIII CATG 7 cut(s) 27, 390, 655, 706, 986, 1069, 1120
NlaIV GGNNCC 4 cut(s) 199, 666, 1077, 1252
NmeAIII GCCGAG 2 cut(s) 480, 823
NmuCI GTSAC 1 cut(s) 608
NspI RCATGY 2 cut(s) 390, 986
NspV TTCGAA 2 cut(s) 8, 762
PagI TCATGA 1 cut(s) 702
PciI ACATGT 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 632
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PfeI GAWTC 4 cut(s) 773, 822, 914, 1222
Ple19I CGATCG 1 cut(s) 124
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PpuMI RGGWCCY 2 cut(s) 52, 93
PscI ACATGT 1 cut(s) 386
Psp5II RGGWCCY 2 cut(s) 52, 93
Psp6I CCWGG 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 41
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 4 cut(s) 199, 666, 1077, 1252
PspPI GGNCC 4 cut(s) 52, 93, 356, 664
PspPPI RGGWCCY 2 cut(s) 52, 93
PsrI GAACNNNNNNTAC 2 cut(s) 12, 44
PstNI CAGNNNCTG 1 cut(s) 992
PsuI RGATCY 1 cut(s) 1120
PvuI CGATCG 1 cut(s) 124
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 1070
SacII CCGCGG 1 cut(s) 663
SapI GCTCTTC 1 cut(s) 632
SaqAI TTAA 4 cut(s) 378, 1281, 1311, 1342
Sau3AI GATC 2 cut(s) 121, 1120
Sau96I GGNCC 4 cut(s) 52, 93, 356, 664
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 170, 230
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 3 cut(s) 534, 576, 917
Sfr303I CCGCGG 1 cut(s) 663
SfuI TTCGAA 2 cut(s) 8, 762
SgrBI CCGCGG 1 cut(s) 663
SinI GGWCC 4 cut(s) 52, 93, 356, 664
SmiMI CAYNNNNRTG 1 cut(s) 1070
SmlI CTYRAG 1 cut(s) 1139
SmoI CTYRAG 1 cut(s) 1139
Sse9I AATT 7 cut(s) 141, 164, 203, 291, 339, 540, 1126
SsiI CCGC 5 cut(s) 81, 519, 660, 662, 751
SspMI CTAG 4 cut(s) 308, 690, 1154, 1169
StyD4I CCNGG 2 cut(s) 168, 228
StyI CCWWGG 5 cut(s) 23, 48, 60, 269, 651
TaaI ACNGT 2 cut(s) 364, 1297
TaiI ACGT 2 cut(s) 319, 635
TaqI TCGA 5 cut(s) 8, 137, 473, 683, 762
TasI AATT 7 cut(s) 141, 164, 203, 291, 339, 540, 1126
TfiI GAWTC 4 cut(s) 773, 822, 914, 1222
Tru1I TTAA 4 cut(s) 378, 1281, 1311, 1342
Tru9I TTAA 4 cut(s) 378, 1281, 1311, 1342
TscAI CASTG 8 cut(s) 111, 216, 358, 369, 453, 627, 1180, 1300
TseFI GTSAC 1 cut(s) 608
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 1 cut(s) 928
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 8 cut(s) 111, 216, 358, 369, 453, 627, 1180, 1300
VpaK11BI GGWCC 4 cut(s) 52, 93, 356, 664
XagI CCTNNNNNAGG 1 cut(s) 59
XapI RAATTY 1 cut(s) 141
XceI RCATGY 2 cut(s) 390, 986
XspI CTAG 4 cut(s) 308, 690, 1154, 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.