MD11G1074900.v1.1

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
6348409 .. 6352616
4208 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1074900.v1.1.491

Sequence Viewer

Length: 1362 bp
ATGGAAGAATCCCAGGAGGCTTTGAACAACATAGAGAATGGGATTAGTGATTATAACAAGGGTTCAGGAAATAATAGAGAGCAGTGGATCAATGTATCAAGAACACCACAAAATTTGTCAACTTCGATTGTACGAAAAAAATCCGACCCGATTCTTGTTTCGAATGTTCGATTCCAAATGCTTAGAAATATTCTCAACAATTTGCACGAGGTTGTTCTTGGCACCAAGCTTGCAGTGCTCTTCCCAGCCATCCCCCTTGCAATTCTGGCTGACTTTTATCACTTCGGGAGACCTTGGATTTTTGCTTTGAGTTTGATGGGACTCACCCCACTCGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCTTACTTCACTGGTCCAACAGTTGGAGGACTTCTTAATGCAACATGTGGAAACGCAACAGAGATGATCATAGCATTATTTGCTCTTCGCCAAAACAAAATAAATGTTGTGAAATACTCCCTATTGGGTTCCATTCTTTCAAACCTCCTCCTTGTTCTTGGGACCTCTCTTCTCTGTGGAGGCTTGGCCAACCTGAAAAAAGAACAAAGATATGATAGAAAGCAGGCTGATGTGAATTCACTACTTCTATTGCTGGGTTTACTATGCCACATGCTGCCACTGATGTTCAGATATGCCTCGGGGTTGGACAATCCCTTTGCCATCGACACTCTTCAGTTGTCAAGAACAAGCAGCATTTTTATGCTCATAGCATATGTCGCCTATATCTTCTTCCAGTTAAAAACCCACCGGCAATTGTTTGAGTCACAAGAGGAAGATGAAGATGAAGACGAAGAAATAGCAGTGATAGGGTTTTGGAGTGCATTCAGTTGGCTGGTTGGTATGACAATTATCATAGCTCTCTTGTCTGAGTATGTTGTGGGTACGATCGAGGCTGCATCAAATTCTTGGGGAATTTCTGTGAGCTTCATCAGCATTATTTTGCTACCAATTGTTGGGAATGCTGCTGAACATGCTGGTTCCATAATTTTTGCTCTCAAGAATAAGTTGGATATTTCTTTGGGAGTTGCTTTAGGTTCTGCATCCCAAATTTCTATGTTTGTGATCCCTTTAAGTGTGATTGTTGCATGGATAATGGGCGTCCAAATGGACCTTGATTTCAGTCTCCTTGAAACTGGTTCTCTTGCTTTCACCATAATCATCACAGCCTTCACATTGCAGGATGGAACTTCACATTATATGAAAGGAGTCATTCTTTTCCTATGCTACATTGTTATTGCCGCATGCTTTTTTGTTGACAAAATTCCCTCGAATGAGACACTTGTGGGCAATTTGGGAACACTGCATGAACCATCCTCTGGAATCTTGTTTGCTTGA

Protein Analysis

454

Amino Acids

49.76

Weight (kDa)

5.15

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 99 - 255 3e-22 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 284 - 426 1.3e-20 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 3 cut(s) 389, 980, 1343
AciI CCGC 1 cut(s) 1266
AclWI GGATC 2 cut(s) 95, 1084
AcoI YGGCCR 1 cut(s) 552
AcsI RAATTY 6 cut(s) 112, 601, 928, 939, 1074, 1287
AcuI CTGAAG 1 cut(s) 683
AcyI GRCGYC 1 cut(s) 1125
AfaI GTAC 2 cut(s) 132, 910
AfiI CCNNNNNNNGG 3 cut(s) 389, 980, 1343
AflIII ACRYGT 2 cut(s) 340, 410
AgsI TTSAA 3 cut(s) 25, 507, 1157
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 4 cut(s) 229, 348, 884, 951
AluI AGCT 4 cut(s) 229, 348, 884, 951
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 3 cut(s) 283, 1154, 1295
AlwI GGATC 2 cut(s) 95, 1084
Ama87I CYCGRG 1 cut(s) 664
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 4 cut(s) 640, 717, 920, 989
ApoI RAATTY 6 cut(s) 112, 601, 928, 939, 1074, 1287
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
AspS9I GGNCC 3 cut(s) 380, 528, 1135
AsuHPI GGTGA 2 cut(s) 316, 1168
AsuII TTCGAA 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 664
AvaII GGWCC 3 cut(s) 380, 528, 1135
BalI TGGCCA 1 cut(s) 554
BanI GGYRCC 1 cut(s) 221
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 819
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 4 cut(s) 627, 729, 907, 976
BccI CCATC 5 cut(s) 257, 310, 695, 1202, 1345
BciT130I CCWGG 1 cut(s) 14
BclI TGATCA 1 cut(s) 432
BcoDI GTCTC 3 cut(s) 283, 1154, 1295
BisI GCNGC 5 cut(s) 641, 718, 921, 990, 1266
BlsI GCNGC 5 cut(s) 642, 719, 922, 991, 1267
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 3 cut(s) 380, 528, 1135
BmeT110I CYCGRG 1 cut(s) 664
BmgT120I GGNCC 3 cut(s) 380, 528, 1135
BmiI GGNNCC 4 cut(s) 223, 496, 529, 1006
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 2 cut(s) 932, 1076
BpiI GAAGAC 1 cut(s) 819
Bpu14I TTCGAA 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 1007
BsaHI GRCGYC 1 cut(s) 1125
BsaI GGTCTC 1 cut(s) 283
BsaJI CCNNGG 3 cut(s) 12, 293, 663
Bsc4I CCNNNNNNNGG 3 cut(s) 389, 980, 1343
Bse118I RCCGGY 1 cut(s) 774
Bse1I ACTGG 3 cut(s) 382, 760, 1165
Bse3DI GCAATG 1 cut(s) 1199
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 3 cut(s) 12, 293, 663
BseGI GGATG 4 cut(s) 249, 1067, 1213, 1337
BseLI CCNNNNNNNGG 3 cut(s) 389, 980, 1343
BseMI GCAATG 1 cut(s) 1199
BseMII CTCAG 2 cut(s) 348, 885
BseNI ACTGG 3 cut(s) 382, 760, 1165
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 4 cut(s) 627, 729, 907, 976
BseYI CCCAGC 2 cut(s) 244, 619
Bsh1285I CGRYCG 1 cut(s) 915
BshFI GGCC 1 cut(s) 554
BshNI GGYRCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 915
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 664
BsiSI CCGG 1 cut(s) 775
BslFI GGGAC 2 cut(s) 333, 541
BslI CCNNNNNNNGG 3 cut(s) 389, 980, 1343
BsmAI GTCTC 3 cut(s) 283, 1154, 1295
BsmFI GGGAC 2 cut(s) 333, 541
BsmI GAATGC 2 cut(s) 848, 991
BsnI GGCC 1 cut(s) 554
Bso31I GGTCTC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 664
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 4 cut(s) 87, 432, 912, 1089
BspACI CCGC 1 cut(s) 1266
BspANI GGCC 1 cut(s) 554
BspCNI CTCAG 2 cut(s) 349, 886
BspLI GGNNCC 4 cut(s) 223, 496, 529, 1006
BspPI GGATC 2 cut(s) 95, 1084
BspQI GCTCTTC 2 cut(s) 245, 456
BspT104I TTCGAA 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 1199
BsrFI RCCGGY 1 cut(s) 774
BsrI ACTGG 3 cut(s) 382, 760, 1165
BssAI RCCGGY 1 cut(s) 774
BssECI CCNNGG 3 cut(s) 12, 293, 663
BssMI GATC 4 cut(s) 87, 432, 912, 1089
BssNI GRCGYC 1 cut(s) 1125
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 4 cut(s) 245, 456, 540, 702
BstACI GRCGYC 1 cut(s) 1125
BstAPI GCANNNNNTGC 1 cut(s) 446
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 3 cut(s) 231, 591, 1270
BstDEI CTNAG 3 cut(s) 182, 357, 894
BstF5I GGATG 4 cut(s) 249, 1067, 1213, 1337
BstKTI GATC 4 cut(s) 90, 435, 915, 1092
BstMAI GTCTC 3 cut(s) 283, 1154, 1295
BstMBI GATC 4 cut(s) 87, 432, 912, 1089
BstMCI CGRYCG 1 cut(s) 915
BstMWI GCNNNNNNNGC 6 cut(s) 235, 266, 446, 743, 957, 998
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 4 cut(s) 414, 640, 1001, 1272
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 4 cut(s) 627, 729, 907, 976
BstV2I GAAGAC 1 cut(s) 819
BsuRI GGCC 1 cut(s) 554
BtsCI GGATG 4 cut(s) 249, 1067, 1213, 1337
BtsI GCAGTG 4 cut(s) 89, 240, 834, 1325
BtsIMutI CAGTG 6 cut(s) 89, 240, 375, 644, 834, 1325
Cac8I GCNNGC 3 cut(s) 231, 591, 1270
Cfr10I RCCGGY 1 cut(s) 774
Cfr13I GGNCC 3 cut(s) 380, 528, 1135
CseI GACGC 1 cut(s) 1114
Csp6I GTAC 2 cut(s) 131, 909
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviAII CATG 6 cut(s) 411, 637, 998, 1113, 1269, 1331
CviQI GTAC 2 cut(s) 131, 909
DdeI CTNAG 3 cut(s) 182, 357, 894
DpnI GATC 4 cut(s) 89, 434, 914, 1091
DpnII GATC 4 cut(s) 87, 432, 912, 1089
EaeI YGGCCR 1 cut(s) 552
Eam1104I CTCTTC 4 cut(s) 245, 456, 540, 702
EarI CTCTTC 4 cut(s) 245, 456, 540, 702
Eco130I CCWWGG 1 cut(s) 293
Eco31I GGTCTC 1 cut(s) 283
Eco47I GGWCC 3 cut(s) 380, 528, 1135
Eco57I CTGAAG 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 664
EcoO109I RGGNCCY 1 cut(s) 528
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 6 cut(s) 414, 640, 1001, 1116, 1272, 1334
FaqI GGGAC 2 cut(s) 333, 541
FatI CATG 6 cut(s) 410, 636, 997, 1112, 1268, 1330
FauNDI CATATG 1 cut(s) 739
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 5 cut(s) 641, 718, 921, 990, 1266
FokI GGATG 4 cut(s) 236, 1054, 1220, 1324
Fsp4HI GCNGC 5 cut(s) 641, 718, 921, 990, 1266
GluI GCNGC 5 cut(s) 641, 718, 921, 990, 1266
GsaI CCCAGC 2 cut(s) 248, 623
HaeIII GGCC 1 cut(s) 554
HapII CCGG 1 cut(s) 775
HgaI GACGC 1 cut(s) 1114
Hin1I GRCGYC 1 cut(s) 1125
Hin1II CATG 6 cut(s) 414, 640, 1001, 1116, 1272, 1334
HincII GTYRAC 2 cut(s) 120, 1282
HindII GTYRAC 2 cut(s) 120, 1282
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 7 cut(s) 8, 151, 171, 321, 788, 1233, 1347
HpaII CCGG 1 cut(s) 775
HphI GGTGA 2 cut(s) 316, 1168
Hpy166II GTNNAC 3 cut(s) 120, 626, 1282
Hpy188I TCNGA 3 cut(s) 145, 656, 895
Hpy188III TCNNGA 6 cut(s) 66, 99, 286, 708, 1024, 1344
Hpy8I GTNNAC 3 cut(s) 120, 626, 1282
HpyAV CCTTC 1 cut(s) 1204
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 1 cut(s) 340
HpyF10VI GCNNNNNNNGC 6 cut(s) 235, 266, 446, 743, 957, 998
HpyF3I CTNAG 3 cut(s) 182, 357, 894
HpySE526I ACGT 1 cut(s) 340
Hsp92I GRCGYC 1 cut(s) 1125
Hsp92II CATG 6 cut(s) 414, 640, 1001, 1116, 1272, 1334
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 4 cut(s) 87, 432, 912, 1089
LguI GCTCTTC 2 cut(s) 245, 456
Lsp1109I GCAGC 4 cut(s) 627, 729, 907, 976
LweI GCATC 2 cut(s) 932, 1076
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 789
MalI GATC 4 cut(s) 89, 434, 914, 1091
MboI GATC 4 cut(s) 87, 432, 912, 1089
MfeI CAATTG 2 cut(s) 779, 975
MhlI GDGCHC 1 cut(s) 240
MlsI TGGCCA 1 cut(s) 554
MluNI TGGCCA 1 cut(s) 554
MlyI GAGTC 3 cut(s) 315, 797, 1242
MmeI TCCRAC 5 cut(s) 168, 370, 407, 651, 1014
Mox20I TGGCCA 1 cut(s) 554
MscI TGGCCA 1 cut(s) 554
MseI TTAA 3 cut(s) 402, 764, 1097
MslI CAYNNNNRTG 1 cut(s) 725
Msp20I TGGCCA 1 cut(s) 554
MspI CCGG 1 cut(s) 775
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 2 cut(s) 779, 975
Mva1269I GAATGC 2 cut(s) 848, 991
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 6 cut(s) 235, 266, 446, 743, 957, 998
NdeI CATATG 1 cut(s) 739
NdeII GATC 4 cut(s) 87, 432, 912, 1089
NlaIII CATG 6 cut(s) 414, 640, 1001, 1116, 1272, 1334
NlaIV GGNNCC 4 cut(s) 223, 496, 529, 1006
NmuCI GTSAC 1 cut(s) 789
NspI RCATGY 4 cut(s) 414, 640, 1001, 1272
NspV TTCGAA 1 cut(s) 161
PaeI GCATGC 1 cut(s) 1272
PciI ACATGT 1 cut(s) 410
PciSI GCTCTTC 2 cut(s) 245, 456
PctI GAATGC 2 cut(s) 848, 991
PfeI GAWTC 4 cut(s) 8, 151, 171, 1347
PflMI CCANNNNNTGG 3 cut(s) 389, 980, 1343
PkrI GCNGC 5 cut(s) 642, 719, 922, 991, 1267
Ple19I CGATCG 1 cut(s) 915
PleI GAGTC 3 cut(s) 315, 796, 1241
PpsI GAGTC 3 cut(s) 315, 796, 1241
PpuMI RGGWCCY 1 cut(s) 528
PscI ACATGT 1 cut(s) 410
PsiI TTATAA 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 12
PspFI CCCAGC 2 cut(s) 244, 619
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 4 cut(s) 223, 496, 529, 1006
PspPI GGNCC 3 cut(s) 380, 528, 1135
PspPPI RGGWCCY 1 cut(s) 528
PvuI CGATCG 1 cut(s) 915
RsaI GTAC 2 cut(s) 132, 910
RsaNI GTAC 2 cut(s) 131, 909
RseI CAYNNNNRTG 1 cut(s) 725
SapI GCTCTTC 2 cut(s) 245, 456
SaqAI TTAA 3 cut(s) 402, 764, 1097
SatI GCNGC 5 cut(s) 641, 718, 921, 990, 1266
Sau3AI GATC 4 cut(s) 87, 432, 912, 1089
Sau96I GGNCC 3 cut(s) 380, 528, 1135
SchI GAGTC 3 cut(s) 315, 797, 1242
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 240
SfaNI GCATC 2 cut(s) 932, 1076
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 3 cut(s) 380, 528, 1135
SmiMI CAYNNNNRTG 1 cut(s) 725
SmlI CTYRAG 1 cut(s) 1022
SmoI CTYRAG 1 cut(s) 1022
SphI GCATGC 1 cut(s) 1272
SsiI CCGC 1 cut(s) 1266
SspI AATATT 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 1 cut(s) 343
TaqI TCGA 6 cut(s) 125, 161, 169, 690, 915, 1295
TauI GCSGC 1 cut(s) 1268
TfiI GAWTC 4 cut(s) 8, 151, 171, 1347
Tru1I TTAA 3 cut(s) 402, 764, 1097
Tru9I TTAA 3 cut(s) 402, 764, 1097
TscAI CASTG 6 cut(s) 89, 240, 382, 651, 834, 1332
TseFI GTSAC 1 cut(s) 789
TseI GCWGC 4 cut(s) 640, 717, 920, 989
Tsp45I GTSAC 1 cut(s) 789
TspDTI ATGAA 5 cut(s) 819, 825, 943, 1241, 1347
TspRI CASTG 6 cut(s) 89, 240, 382, 651, 834, 1332
Van91I CCANNNNNTGG 3 cut(s) 389, 980, 1343
VpaK11BI GGWCC 3 cut(s) 380, 528, 1135
XapI RAATTY 6 cut(s) 112, 601, 928, 939, 1074, 1287
XceI RCATGY 4 cut(s) 414, 640, 1001, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.