Rmu_sc0002658.1_g000024

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002658.1
Physical Location & Seq
Reverse (-)
106654 .. 110342
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002658.1_g000024.1.cds

Sequence Viewer

Length: 1395 bp
atgggatcacaagaggatttcatcatcaacaacattgagaatggaatcgacgaagatcacaagggttttgtaaacggcactaataatatgaatggagagaataaggagcaacggagtgttgggaaggcgcctcaaaacctgtcatcctccatggtacgcaaaaagtccgacccgattcttgtttctaatgtacgcttccaaatgctcagaaattttctaaacaatttgcaagaggtgatccttggcaccaagctcgccgtgctttttccggccattccactcgcgattgcggctgatttttaccacttcggaagaccttgggtttttgctttgagtttgttgggactcactccactggctgaacgtgtcagcttcctccccgaacaaatcgcatacttcaccggtccaacagttgggggacttcttaatgcaacgtgtggaaatgcaacagagatgataatagcactatttgctcttcatgagaacaaaatagatgttgtcaagtactccttattgggttccattctctcaaacctcctccttgttcttggtacctctcttctttgtggaggcctggccaacatcaaaaaagaacaaagatatgatagaaaacaggctgatgtgaattcactactgttactgctggggttactatgtcacatgttgccacttttgttcagatatgcctcaggagttagcaattcctatgccacctccactcttgagttgtcaagagcaagcagcatttttatgcttattgcatatgttgcttatatcttcttccagttgaaaacacaccgccaagtgtttgaatcacaagaggaagatgatgaagaagaagagaaagcagtgattggatgttggagtgcattcggttggctggctggtatgacagttatcatagcgctcttgtctgagtatgtcgtgggtacaattgaggctgcatcaaactcttggggcatttctgtgacctttatcagcattattttgctaccgattgtgggaaatgcagcagaacatgctggatcaatcatatttgctctcaagaacaagttggacatatctttgggtgtttctttaggttctgcatctcagatctccatgtttgtggttcctgtaagtgtgattgttgcttggataatggggattgaaatggatcttgactttagcctccttgagactggttcacttgctttcacgataatcatcacagcctttacattgcaggatggaacttcacattatatgaaaggagtcattcttttcctctgctacattattattgctgcttgcttttttgttgacaaaactcccatgaatgattcaaatggtagcgatttgggtaatgtacttgaactatcttccaactattatgccggagtcttatttgcttga

Protein Analysis

464

Amino Acids

50.63

Weight (kDa)

4.97

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 3 cut(s) 127, 245, 551
AccB7I CCANNNNNTGG 1 cut(s) 413
AccII CGCG 1 cut(s) 284
AciI CCGC 2 cut(s) 290, 799
AclWI GGATC 4 cut(s) 13, 232, 1033, 1164
AcoI YGGCCR 2 cut(s) 270, 576
AcsI RAATTY 2 cut(s) 211, 625
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 6 cut(s) 156, 192, 506, 553, 931, 1350
AfeI AGCGCT 1 cut(s) 906
AfiI CCNNNNNNNGG 2 cut(s) 413, 1001
AflIII ACRYGT 3 cut(s) 364, 434, 660
AgeI ACCGGT 1 cut(s) 401
AgsI TTSAA 5 cut(s) 790, 812, 1151, 1326, 1355
AjnI CCWGG 1 cut(s) 573
AluBI AGCT 2 cut(s) 253, 372
AluI AGCT 2 cut(s) 253, 372
Alw26I GTCTC 1 cut(s) 1172
AlwI GGATC 4 cut(s) 13, 232, 1033, 1164
Aor51HI AGCGCT 1 cut(s) 906
AoxI GGCC 3 cut(s) 270, 571, 576
ApeKI GCWGC 4 cut(s) 741, 941, 1010, 1286
ApoI RAATTY 2 cut(s) 211, 625
AsiGI ACCGGT 1 cut(s) 401
Asp718I GGTACC 1 cut(s) 551
AspLEI GCGC 2 cut(s) 130, 907
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 247, 391
AvaII GGWCC 1 cut(s) 404
AxyI CCTNAGG 1 cut(s) 688
BalI TGGCCA 1 cut(s) 578
BanI GGYRCC 3 cut(s) 127, 245, 551
BbsI GAAGAC 1 cut(s) 319
BbvI GCAGC 4 cut(s) 753, 928, 1022, 1273
BccI CCATC 1 cut(s) 1223
BceAI ACGGC 2 cut(s) 91, 242
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 1 cut(s) 575
BcoDI GTCTC 1 cut(s) 1172
BfoI RGCGCY 2 cut(s) 131, 908
BglII AGATCT 1 cut(s) 1095
BisI GCNGC 5 cut(s) 291, 742, 942, 1011, 1287
BlsI GCNGC 5 cut(s) 292, 743, 943, 1012, 1288
BmcAI AGTACT 1 cut(s) 506
Bme1390I CCNGG 1 cut(s) 575
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 5 cut(s) 129, 247, 520, 553, 1113
BmrFI CCNGG 1 cut(s) 575
BmsI GCATC 2 cut(s) 953, 1097
BpiI GAAGAC 1 cut(s) 319
BpuEI CTTGAG 3 cut(s) 743, 1028, 1196
BsaBI GATNNNNATC 1 cut(s) 1205
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 150, 241, 317
BsaWI WCCGGW 1 cut(s) 401
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 1001
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 3 cut(s) 360, 784, 1186
Bse21I CCTNAGG 1 cut(s) 688
Bse3DI GCAATG 1 cut(s) 1220
Bse8I GATNNNNATC 1 cut(s) 1205
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 3 cut(s) 150, 241, 317
BseGI GGATG 3 cut(s) 143, 863, 1234
BseJI GATNNNNATC 1 cut(s) 1205
BseLI CCNNNNNNNGG 2 cut(s) 413, 1001
BseMI GCAATG 1 cut(s) 1220
BseMII CTCAG 4 cut(s) 220, 702, 906, 1106
BseNI ACTGG 3 cut(s) 360, 784, 1186
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 4 cut(s) 753, 928, 1022, 1273
BseYI CCCAGC 1 cut(s) 643
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 3 cut(s) 272, 573, 578
BshNI GGYRCC 3 cut(s) 127, 245, 551
BshTI ACCGGT 1 cut(s) 401
BsiSI CCGG 3 cut(s) 269, 402, 1377
BslFI GGGAC 2 cut(s) 357, 432
BslI CCNNNNNNNGG 2 cut(s) 413, 1001
BsmAI GTCTC 1 cut(s) 1172
BsmFI GGGAC 2 cut(s) 357, 432
BsmI GAATGC 1 cut(s) 869
BsnI GGCC 3 cut(s) 272, 573, 578
Bsp143I GATC 6 cut(s) 5, 55, 237, 1025, 1095, 1156
Bsp19I CCATGG 1 cut(s) 150
Bsp68I TCGCGA 1 cut(s) 284
BspACI CCGC 2 cut(s) 290, 799
BspANI GGCC 3 cut(s) 272, 573, 578
BspCNI CTCAG 4 cut(s) 219, 701, 907, 1105
BspFNI CGCG 1 cut(s) 284
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 5 cut(s) 129, 247, 520, 553, 1113
BspPI GGATC 4 cut(s) 13, 232, 1033, 1164
BspQI GCTCTTC 1 cut(s) 480
BspT107I GGYRCC 3 cut(s) 127, 245, 551
BsrDI GCAATG 1 cut(s) 1220
BsrFI RCCGGY 1 cut(s) 401
BsrI ACTGG 3 cut(s) 360, 784, 1186
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 3 cut(s) 150, 241, 317
BssMI GATC 6 cut(s) 5, 55, 237, 1025, 1095, 1156
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 3 cut(s) 150, 241, 317
Bst2UI CCWGG 1 cut(s) 575
Bst4CI ACNGT 3 cut(s) 412, 636, 895
Bst6I CTCTTC 3 cut(s) 480, 564, 834
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 3 cut(s) 470, 767, 1019
BstC8I GCNNGC 4 cut(s) 255, 739, 882, 1291
BstDEI CTNAG 4 cut(s) 206, 688, 915, 1092
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 3 cut(s) 143, 863, 1234
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 2 cut(s) 131, 908
BstHHI GCGC 2 cut(s) 130, 907
BstKTI GATC 6 cut(s) 8, 58, 240, 1028, 1098, 1159
BstMAI GTCTC 1 cut(s) 1172
BstMBI GATC 6 cut(s) 5, 55, 237, 1025, 1095, 1156
BstMWI GCNNNNNNNGC 5 cut(s) 259, 290, 470, 767, 1019
BstNI CCWGG 1 cut(s) 575
BstNSI RCATGY 2 cut(s) 664, 1022
BstSCI CCNGG 1 cut(s) 573
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 4 cut(s) 753, 928, 1022, 1273
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 2 cut(s) 1095, 1156
BstXI CCANNNNNNTGG 1 cut(s) 1108
BstYI RGATCY 2 cut(s) 1095, 1156
Bsu36I CCTNAGG 1 cut(s) 688
BsuRI GGCC 3 cut(s) 272, 573, 578
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 3 cut(s) 143, 863, 1234
BtsI GCAGTG 1 cut(s) 855
BtsIMutI CAGTG 2 cut(s) 353, 855
BtuMI TCGCGA 1 cut(s) 284
Cac8I GCNNGC 4 cut(s) 255, 739, 882, 1291
CciI TCATGA 1 cut(s) 478
CfoI GCGC 2 cut(s) 130, 907
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 404
Csp6I GTAC 6 cut(s) 155, 191, 505, 552, 930, 1349
CspAI ACCGGT 1 cut(s) 401
CviAII CATG 6 cut(s) 151, 479, 661, 1019, 1102, 1315
CviQI GTAC 6 cut(s) 155, 191, 505, 552, 930, 1349
DdeI CTNAG 4 cut(s) 206, 688, 915, 1092
DinI GGCGCC 1 cut(s) 129
DpnI GATC 6 cut(s) 7, 57, 239, 1027, 1097, 1158
DpnII GATC 6 cut(s) 5, 55, 237, 1025, 1095, 1156
EaeI YGGCCR 2 cut(s) 270, 576
Eam1104I CTCTTC 3 cut(s) 480, 564, 834
EarI CTCTTC 3 cut(s) 480, 564, 834
Eco130I CCWWGG 3 cut(s) 150, 241, 317
Eco147I AGGCCT 1 cut(s) 573
Eco47I GGWCC 1 cut(s) 404
Eco47III AGCGCT 1 cut(s) 906
Eco81I CCTNAGG 1 cut(s) 688
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 573
EcoT14I CCWWGG 3 cut(s) 150, 241, 317
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 3 cut(s) 150, 241, 317
FaeI CATG 6 cut(s) 154, 482, 664, 1022, 1105, 1318
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 2 cut(s) 357, 432
FatI CATG 6 cut(s) 150, 478, 660, 1018, 1101, 1314
FauNDI CATATG 1 cut(s) 763
Fnu4HI GCNGC 5 cut(s) 291, 742, 942, 1011, 1287
FokI GGATG 3 cut(s) 130, 870, 1241
Fsp4HI GCNGC 5 cut(s) 291, 742, 942, 1011, 1287
GlaI GCGC 2 cut(s) 129, 906
GluI GCNGC 5 cut(s) 291, 742, 942, 1011, 1287
GsaI CCCAGC 1 cut(s) 647
HaeII RGCGCY 2 cut(s) 131, 908
HaeIII GGCC 3 cut(s) 272, 573, 578
HapII CCGG 3 cut(s) 269, 402, 1377
HhaI GCGC 2 cut(s) 130, 907
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 6 cut(s) 154, 482, 664, 1022, 1105, 1318
Hin6I GCGC 2 cut(s) 128, 905
HinP1I GCGC 2 cut(s) 128, 905
HincII GTYRAC 1 cut(s) 1303
HindII GTYRAC 1 cut(s) 1303
HinfI GANTC 7 cut(s) 45, 175, 345, 812, 1254, 1322, 1380
HpaII CCGG 3 cut(s) 269, 402, 1377
HphI GGTGA 2 cut(s) 247, 391
Hpy166II GTNNAC 3 cut(s) 73, 1187, 1303
Hpy188I TCNGA 6 cut(s) 169, 209, 311, 680, 916, 1095
Hpy188III TCNNGA 8 cut(s) 283, 479, 690, 722, 732, 1045, 1160, 1198
Hpy8I GTNNAC 3 cut(s) 73, 1187, 1303
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 3 cut(s) 412, 636, 895
HpyCH4IV ACGT 2 cut(s) 364, 434
HpyCH4V TGCA 9 cut(s) 229, 431, 446, 761, 869, 944, 1010, 1088, 1225
HpyF10VI GCNNNNNNNGC 5 cut(s) 259, 290, 470, 767, 1019
HpyF3I CTNAG 4 cut(s) 206, 688, 915, 1092
HpySE526I ACGT 2 cut(s) 364, 434
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 6 cut(s) 154, 482, 664, 1022, 1105, 1318
HspAI GCGC 2 cut(s) 128, 905
KasI GGCGCC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 555
Kzo9I GATC 6 cut(s) 5, 55, 237, 1025, 1095, 1156
LguI GCTCTTC 1 cut(s) 480
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 4 cut(s) 753, 928, 1022, 1273
LweI GCATC 2 cut(s) 953, 1097
MaeII ACGT 2 cut(s) 364, 434
MaeIII GTNAC 4 cut(s) 636, 648, 656, 967
MalI GATC 6 cut(s) 7, 57, 239, 1027, 1097, 1158
MboI GATC 6 cut(s) 5, 55, 237, 1025, 1095, 1156
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 2 cut(s) 1095, 1156
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 5 cut(s) 211, 223, 625, 700, 933
MluNI TGGCCA 1 cut(s) 578
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 3 cut(s) 339, 1263, 1389
MmeI TCCRAC 5 cut(s) 192, 431, 842, 1035, 1389
Mox20I TGGCCA 1 cut(s) 578
MscI TGGCCA 1 cut(s) 578
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 3 cut(s) 749, 965, 1106
Msp20I TGGCCA 1 cut(s) 578
MspI CCGG 3 cut(s) 269, 402, 1377
MspR9I CCNGG 1 cut(s) 575
MunI CAATTG 1 cut(s) 933
Mva1269I GAATGC 1 cut(s) 869
MvaI CCWGG 1 cut(s) 575
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 5 cut(s) 259, 290, 470, 767, 1019
NarI GGCGCC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 150
NdeI CATATG 1 cut(s) 763
NdeII GATC 6 cut(s) 5, 55, 237, 1025, 1095, 1156
NlaIII CATG 6 cut(s) 154, 482, 664, 1022, 1105, 1318
NlaIV GGNNCC 5 cut(s) 129, 247, 520, 553, 1113
NmuCI GTSAC 2 cut(s) 656, 967
NruI TCGCGA 1 cut(s) 284
NspI RCATGY 2 cut(s) 664, 1022
PagI TCATGA 1 cut(s) 478
PceI AGGCCT 1 cut(s) 573
PciI ACATGT 1 cut(s) 660
PciSI GCTCTTC 1 cut(s) 480
PctI GAATGC 1 cut(s) 869
PfeI GAWTC 4 cut(s) 45, 175, 812, 1322
PflMI CCANNNNNTGG 1 cut(s) 413
PinAI ACCGGT 1 cut(s) 401
PkrI GCNGC 5 cut(s) 292, 743, 943, 1012, 1288
PleI GAGTC 3 cut(s) 339, 1262, 1388
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 3 cut(s) 339, 1262, 1388
PscI ACATGT 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 573
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 5 cut(s) 129, 247, 520, 553, 1113
PspPI GGNCC 1 cut(s) 404
PsuI RGATCY 2 cut(s) 1095, 1156
RruI TCGCGA 1 cut(s) 284
RsaI GTAC 6 cut(s) 156, 192, 506, 553, 931, 1350
RsaNI GTAC 6 cut(s) 155, 191, 505, 552, 930, 1349
RseI CAYNNNNRTG 3 cut(s) 749, 965, 1106
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 5 cut(s) 291, 742, 942, 1011, 1287
Sau3AI GATC 6 cut(s) 5, 55, 237, 1025, 1095, 1156
Sau96I GGNCC 1 cut(s) 404
ScaI AGTACT 1 cut(s) 506
SchI GAGTC 3 cut(s) 339, 1263, 1389
ScrFI CCNGG 1 cut(s) 575
SfaNI GCATC 2 cut(s) 953, 1097
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 3 cut(s) 749, 965, 1106
SmlI CTYRAG 3 cut(s) 722, 1043, 1175
SmoI CTYRAG 3 cut(s) 722, 1043, 1175
Sse9I AATT 5 cut(s) 211, 223, 625, 700, 933
SseBI AGGCCT 1 cut(s) 573
SsiI CCGC 2 cut(s) 290, 799
SspDI GGCGCC 1 cut(s) 127
StuI AGGCCT 1 cut(s) 573
StyD4I CCNGG 1 cut(s) 573
StyI CCWWGG 3 cut(s) 150, 241, 317
TaaI ACNGT 3 cut(s) 412, 636, 895
TaiI ACGT 2 cut(s) 367, 437
TaqI TCGA 1 cut(s) 48
TasI AATT 5 cut(s) 211, 223, 625, 700, 933
TatI WGTACW 2 cut(s) 504, 1348
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 4 cut(s) 45, 175, 812, 1322
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 2 cut(s) 360, 855
TseFI GTSAC 2 cut(s) 656, 967
TseI GCWGC 4 cut(s) 741, 941, 1010, 1286
Tsp45I GTSAC 2 cut(s) 656, 967
TspDTI ATGAA 6 cut(s) 10, 104, 467, 846, 1262, 1331
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 2 cut(s) 360, 855
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 2 cut(s) 211, 625
XceI RCATGY 2 cut(s) 664, 1022
ZrmI AGTACT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.