Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002917

Physical Location & Seq

Genomic Coordinates Reverse (-)

54621934 .. 54628007

Gene Structure 6074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0397500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2595 bp

ATGGGAATGGCACCGCTTGGTCCCGACAAAACCCCCCTCGGCTCGGCTTGGCTTATCAAAGCCGGCGCAATCCTACAACGTGTAAGCGCGTATTTAGAAATAAAGACCAGAAATACTGGAAAAGCCAGCCTGAAAAAGGTCCAGAGCTCATTTAGCTCTTCTACTCTTCTCTCTCTTCTCTGCTCAGCAAATCTCACACATTTTCCGAGACGACTCCAAACGACGCCGTCGCGATCTTCTCCACTACCAGGCAGCTCTGCTGACAGACCGGCCGGCGAGGCTTCTCCGGCAATGTGGAACTCACGCGCTCCGGTCGCCGTACTTGCTGCTCTTCTCTACTCAGTAGCTCTGGTCTCTGCTCAGGGATCTAGTCAATGGAAAACACTCACAGGAGATCCGCCTTTGGTCATAGCACGAGGGGGCTTTTCAGGACTCTTTCCTGGTTTCAGTTCTATAGCTTACAATTTGGCATTGATCACTAGTGTACCAGATGTGGTATTATATTGTGATGTCCAACTAACAAAGGATGCAGCTGGAATTTGCTTTCCAGATTTGCTGCTGAATAACAATTCGAATGTTGATCAAATGTTTCCAAAGAAGGAAAATACTTACCCGGTTGATGGAGCTCCGATTAAAGGGTGGTTTAGCATTGACTATACTCTCAAAGACCTTGCAAATGTTGTTGTTACTCAGGGAGTATATACTCGATCTAACAGGTTTGATGGCAATATGTACCCAATTCTCACCGTAGAAGATGTGGGTGTGCAATTCAGACCACCAGGCTTATGGTTGAATATTGAGAAGAATATATTCTTCACGCAACACAACTTGAGTATGAGAAACTATGTGATTTCTGTATCAAAGAAAGTGGTTGTCAATTTTATCTCATCACCAGAGGTGGATTTCCTGAAAAGTATTAAAGCACGTGTTAGTCCAAGCACAACAAAGTTGATCTTTAAGTTTCTTGATGAAGCTGAGATTGAGCCTTCGACAAACCAGACTTATGGTTCTCTATTGAAGAATCTCACATTTATCAAGACATTTGCCTCTGGAATTATAGTTCCTAAAACTTACATATGGCCTGTCACTGTGGACAATTATTTAGAACCTCACACTACCATTGTTTCGGATGCTCATAAAGCAGGGCTCACAGTATTTGTGTCAGGTTTGTATAATGACGTGCCATTCCCCTTCAATTACAGTTATGATCCAGTTTCTGAGTACCTGTCATTCTTCGACAACGGCGATTTCAGTGTTGACGGTGTGCTGTCTGACTTTCCCATAACTCCATCAGCAGCCATAGAATTAGGATTTTTGATGCAGCATGACAAAATCAACAAAGGTTCCGATTGTTATGCTCACCCAGAAAAGAATGCTTCAGTACAAGCTACACCTTTGGTTATCTCGAAAGACGGAAATAGCGGAGACTACCCTGGCTGTACTGACTTGGCGTATAAGCATGCAATTGCAGATGGTGTAGATGTACTCGATTGTAACGTCCAAATGTCCAAGGACGGGATACCATTTTGCTCGAGCTCTATAAATCTTATTGATAGCACAACAGTTGCTCAATCAAGCTTTAGCAGCTACACAATGAATGTTCCAGATATTAAGGTTGGCAGTGGAATATATACCTTTAGCCTGACATGGGATCAGATCAAAACACTACAACCAACTATATCAAGCCCAGAGAAAAATTACAACTTGCTCAGGAATCCAAGATTCAAGAATGCTGGCACTTACTTGAAACTATCTGAATTTTTGACCTTGGCAAAGAATTCGAGTTCTCTATTAGGTGTCTTAATTGGCATAGAGCATGCGCCATATCTTGTAGAGAAGCAGGGACTACATGTAACAGATGCAGTCATGACTGAGTTGAACAAAACTGGTTTTGATAATCAGACAGCCCTAGATGTCATGATTCAGTCCAGCAATAGTTCTGTTCTGATGAAATTTAAGGAGAAAAGCAAGTATAAACTTGTTTACAAGATTGAAGAAAACATTGGTGATGCCCCTGATAAAACTGTTCAGGACATCAAGAAGTTTGCCGATGCTGTGGTCATCAACAAGGCCTCTGTCTTACCAGAAAATCAGTTATTCGTCGATGGAGCAACCAATGTTGTAAAGAAGTTTCATGGATTTAAACTACCTGTTTATGTTGAACTCTTCAGCAATGAGTTTGTATCTCAAGCATGGGACTTCTTCTCAGATGCATCCGTGGAGATCAATTCATTTGTGACGGGGGCCGAAGTTGATGGTGTTATCACAGGCTTCCCCAAAACAGCTGCTAGATACAAAAGAAACCGGTGTTTAAGTTATAAAGAGACACCTACCTACATGAGCCCTGTTCAGCCAGGCAGTCTGATACAAGTTGTTTCTCCTCTTTACTTGCCACCTGCTGAGGCCCCAAATCCAGCCCTGACAGAGAGTGATGTGGTTGAGCCGCCTTTGCCGTCCGCCGAAACGGCCTCAGCTCCTGGGCCAGCTGGTGGATCTACAGTAGCACCACCACAGCCGAACGGGCAGCCTAAGACTGCTGCGTGCTTCTTTCTCTCAACTCTGGCTATGCTAGTTGCCACTCTTTTTCTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006793 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006882 GO:0008150 GO:0008152 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0051592 GO:0051704 GO:0051707 GO:0055062 GO:0055065 GO:0055069 GO:0055071 GO:0055074 GO:0055076 GO:0055080 GO:0055081 GO:0055082 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0072503 GO:0072505 GO:0072506 GO:0072507 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

864

Amino Acids

93.9

Weight (kDa)

6.02

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	169 - 428	8.8e-06	Glycerophosphoryl diester phosphodiesterase family
GDPD	PF03009	472 - 760	6.4e-24	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38170 AT2G38170 AT2G38170 AT3G51860 AT3G51860
fragaria_vesca	FvH4_3g38530 FvH4_6g11493
malus_domestica	MD03G1070900.v1.1 MD04G1151600.v1.1 MD11G1074900.v1.1 MD12G1165800.v1.1
prunus_persica	Prupe.6G057700_v2.0.a1 Prupe.6G276800_v2.0.a1 Prupe.6G276800_v2.0.a1
pyrus_communis	pycom03g05720 pycom04g13770
rosa_chinensis	RchiOBHm_Chr3g0463191 RchiOBHm_Chr5g0069431
rosa_laevigata	RLG00000024804 RLG00000036052
rosa_multiflora	Rmu_sc0002658.1_g000024 Rmu_sc0022743.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011530 Rroxscaffold_6G00416820
rosa_rugosa	Rorug03G0062200.1 Rorug03G0062300 Rorug03G0062300 Rorug05G0397500
rosa_samantha	Rh3AG120400 Rh3BG124800 Rh3CG126900 Rh3DG125800 Rh5AG454800 Rh5BG473600 Rh5CG496100 Rh5DG485600
rosa_wichuraiana	Rw3G010220 Rw5G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2319
AarI	CACCTGC	1 cut(s)	2404
Acc36I	ACCTGC	1 cut(s)	2404
AccB1I	GGYRCC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	2489
AccII	CGCG	3 cut(s)	89, 232, 306
AciI	CCGC	5 cut(s)	14, 398, 1422, 2444, 2457
AclWI	GGATC	5 cut(s)	373, 389, 1202, 1659, 2500
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	4 cut(s)	537, 1757, 1777, 1952
AcuI	CTGAAG	2 cut(s)	1362, 2152
AcvI	CACGTG	1 cut(s)	926
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	7 cut(s)	321, 486, 734, 1223, 1383, 1441, 1485
AfiI	CCNNNNNNNGG	8 cut(s)	43, 136, 248, 620, 635, 1515, 1648, 2489
AflIII	ACRYGT	3 cut(s)	79, 925, 1849
AgeI	ACCGGT	1 cut(s)	2304
AgsI	TTSAA	8 cut(s)	793, 1018, 1195, 1726, 1747, 1879, 1994, 2162
AhlI	ACTAGT	1 cut(s)	479
AjiI	CACGTC	1 cut(s)	1180
AjnI	CCWGG	6 cut(s)	247, 439, 778, 1432, 2353, 2476
AjuI	GAANNNNNNNTTGG	2 cut(s)	1986, 2018
AloI	GAACNNNNNNTCC	2 cut(s)	1044, 1076
Alw21I	GWGCWC	3 cut(s)	149, 628, 1538
Alw26I	GTCTC	4 cut(s)	202, 358, 1419, 2318
AlwI	GGATC	5 cut(s)	373, 389, 1202, 1659, 2500
AlwNI	CAGNNNCTG	2 cut(s)	1217, 2477
Ama87I	CYCGRG	1 cut(s)	1531
AoxI	GGCC	7 cut(s)	270, 1079, 2070, 2244, 2403, 2466, 2480
ApoI	RAATTY	4 cut(s)	537, 1757, 1777, 1952
AsiGI	ACCGGT	1 cut(s)	2304
Asp700I	GAANNNNTTC	1 cut(s)	809
AspLEI	GCGC	4 cut(s)	68, 89, 308, 1822
AspS9I	GGNCC	5 cut(s)	20, 139, 2244, 2404, 2480
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	4 cut(s)	736, 882, 1352, 2018
AsuII	TTCGAA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	1531
AvaII	GGWCC	2 cut(s)	20, 139
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	5 cut(s)	149, 628, 1149, 1538, 2345
BauI	CACGAG	1 cut(s)	414
BbrPI	CACGTG	1 cut(s)	926
Bbv12I	GWGCWC	3 cut(s)	149, 628, 1538
BbvCI	CCTCAGC	2 cut(s)	2400, 2470
BccI	CCATC	6 cut(s)	614, 716, 1297, 1466, 2099, 2249
BceAI	ACGGC	5 cut(s)	211, 302, 1258, 2437, 2481
BcgI	CGANNNNNNTGC	4 cut(s)	1337, 1371, 1761, 1795
BciT130I	CCWGG	6 cut(s)	249, 441, 780, 1434, 2355, 2478
BciVI	GTATCC	1 cut(s)	1512
BclI	TGATCA	2 cut(s)	474, 580
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	4 cut(s)	202, 358, 1419, 2318
BcuI	ACTAGT	1 cut(s)	479
BfaI	CTAG	5 cut(s)	369, 480, 1910, 2289, 2570
BfmI	CTRYAG	2 cut(s)	453, 2496
BfuAI	ACCTGC	1 cut(s)	2404
BfuI	GTATCC	1 cut(s)	1512
BglI	GCCNNNNNGGC	3 cut(s)	278, 2465, 2521
BlpI	GCTNAGC	1 cut(s)	184
Bme1390I	CCNGG	7 cut(s)	249, 441, 614, 780, 1434, 2355, 2478
Bme18I	GGWCC	2 cut(s)	20, 139
BmeT110I	CYCGRG	1 cut(s)	1531
BmgBI	CACGTC	1 cut(s)	1180
BmgT120I	GGNCC	5 cut(s)	20, 139, 2244, 2404, 2480
BmiI	GGNNCC	5 cut(s)	12, 22, 1345, 2245, 2406
BmrFI	CCNGG	7 cut(s)	249, 441, 614, 780, 1434, 2355, 2478
BmsI	GCATC	8 cut(s)	517, 1120, 1308, 1849, 1999, 2041, 2200, 2222
Bpu10I	CCTNAGC	4 cut(s)	360, 1709, 2400, 2470
Bpu1102I	GCTNAGC	1 cut(s)	184
Bpu14I	TTCGAA	1 cut(s)	572
BpuEI	CTTGAG	2 cut(s)	850, 2172
BpuMI	CCSGG	1 cut(s)	614
BsaAI	YACGTR	1 cut(s)	926
BsaHI	GRCGYC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	6 cut(s)	37, 1432, 1509, 1767, 2217, 2477
BsaWI	WCCGGW	2 cut(s)	310, 2304
Bsc4I	CCNNNNNNNGG	8 cut(s)	43, 136, 248, 620, 635, 1515, 1648, 2489
Bse118I	RCCGGY	4 cut(s)	62, 268, 272, 2304
Bse1I	ACTGG	3 cut(s)	121, 1211, 1891
Bse3DI	GCAATG	2 cut(s)	297, 2179
BseBI	CCWGG	6 cut(s)	249, 441, 780, 1434, 2355, 2478
BseDI	CCNNGG	6 cut(s)	37, 1432, 1509, 1767, 2217, 2477
BseGI	GGATG	3 cut(s)	532, 1135, 2213
BseLI	CCNNNNNNNGG	8 cut(s)	43, 136, 248, 620, 635, 1515, 1648, 2489
BseMI	GCAATG	2 cut(s)	297, 2179
BseNI	ACTGG	3 cut(s)	121, 1211, 1891
BseRI	GAGGAG	1 cut(s)	2370
BseX3I	CGGCCG	1 cut(s)	270
Bsh1236I	CGCG	3 cut(s)	89, 232, 306
Bsh1285I	CGRYCG	2 cut(s)	273, 315
BshFI	GGCC	7 cut(s)	272, 1081, 2072, 2246, 2405, 2468, 2482
BshNI	GGYRCC	1 cut(s)	10
BshTI	ACCGGT	1 cut(s)	2304
BsiEI	CGRYCG	2 cut(s)	273, 315
BsiHKAI	GWGCWC	3 cut(s)	149, 628, 1538
BsiHKCI	CYCGRG	1 cut(s)	1531
BsiSI	CCGG	7 cut(s)	63, 269, 273, 287, 311, 614, 2305
BslFI	GGGAC	3 cut(s)	6, 1857, 2210
BslI	CCNNNNNNNGG	8 cut(s)	43, 136, 248, 620, 635, 1515, 1648, 2489
BsmAI	GTCTC	4 cut(s)	202, 358, 1419, 2318
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	3 cut(s)	6, 1857, 2210
BsmI	GAATGC	2 cut(s)	1378, 1735
BsnI	GGCC	7 cut(s)	272, 1081, 2072, 2246, 2405, 2468, 2482
Bso31I	GGTCTC	1 cut(s)	358
BsoBI	CYCGRG	1 cut(s)	1531
Bsp119I	TTCGAA	1 cut(s)	572
Bsp1286I	GDGCHC	5 cut(s)	149, 628, 1149, 1538, 2345
Bsp1720I	GCTNAGC	1 cut(s)	184
Bsp68I	TCGCGA	1 cut(s)	232
BspACI	CCGC	5 cut(s)	14, 398, 1422, 2444, 2457
BspANI	GGCC	7 cut(s)	272, 1081, 2072, 2246, 2405, 2468, 2482
BspFNI	CGCG	3 cut(s)	89, 232, 306
BspHI	TCATGA	2 cut(s)	1866, 1917
BspLI	GGNNCC	5 cut(s)	12, 22, 1345, 2245, 2406
BspMI	ACCTGC	1 cut(s)	2404
BspPI	GGATC	5 cut(s)	373, 389, 1202, 1659, 2500
BspQI	GCTCTTC	2 cut(s)	163, 336
BspT104I	TTCGAA	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	358
BsrDI	GCAATG	2 cut(s)	297, 2179
BsrFI	RCCGGY	4 cut(s)	62, 268, 272, 2304
BsrI	ACTGG	3 cut(s)	121, 1211, 1891
BssAI	RCCGGY	4 cut(s)	62, 268, 272, 2304
BssECI	CCNNGG	6 cut(s)	37, 1432, 1509, 1767, 2217, 2477
BssNI	GRCGYC	1 cut(s)	224
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	2 cut(s)	1509, 1767
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	6 cut(s)	249, 441, 780, 1434, 2355, 2478
Bst4CI	ACNGT	8 cut(s)	748, 1090, 1153, 1202, 1262, 1564, 2026, 2500
Bst6I	CTCTTC	5 cut(s)	163, 171, 180, 336, 2171
BstACI	GRCGYC	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	926
BstBI	TTCGAA	1 cut(s)	572
BstC8I	GCNNGC	8 cut(s)	64, 127, 274, 1461, 1735, 1818, 2484, 2542
BstDSI	CCRYGG	1 cut(s)	2217
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	3 cut(s)	532, 1135, 2213
BstFNI	CGCG	3 cut(s)	89, 232, 306
BstHHI	GCGC	4 cut(s)	68, 89, 308, 1822
BstMAI	GTCTC	4 cut(s)	202, 358, 1419, 2318
BstMCI	CGRYCG	2 cut(s)	273, 315
BstNI	CCWGG	6 cut(s)	249, 441, 780, 1434, 2355, 2478
BstNSI	RCATGY	3 cut(s)	1463, 1820, 1853
BstSCI	CCNGG	7 cut(s)	247, 439, 612, 778, 1432, 2353, 2476
BstSFI	CTRYAG	2 cut(s)	453, 2496
BstUI	CGCG	3 cut(s)	89, 232, 306
BstX2I	RGATCY	3 cut(s)	365, 394, 2492
BstXI	CCANNNNNNTGG	2 cut(s)	786, 1004
BstYI	RGATCY	3 cut(s)	365, 394, 2492
BstZI	CGGCCG	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	1512
BsuRI	GGCC	7 cut(s)	272, 1081, 2072, 2246, 2405, 2468, 2482
BtgI	CCRYGG	1 cut(s)	2217
BtrI	CACGTC	1 cut(s)	1180
BtsCI	GGATG	3 cut(s)	532, 1135, 2213
BtsI	GCAGTG	1 cut(s)	1627
BtsIMutI	CAGTG	3 cut(s)	1086, 1258, 1627
BtuMI	TCGCGA	1 cut(s)	232
BveI	ACCTGC	1 cut(s)	2404
Cac8I	GCNNGC	8 cut(s)	64, 127, 274, 1461, 1735, 1818, 2484, 2542
CaiI	CAGNNNCTG	2 cut(s)	1217, 2477
CciI	TCATGA	2 cut(s)	1866, 1917
CfoI	GCGC	4 cut(s)	68, 89, 308, 1822
Cfr10I	RCCGGY	4 cut(s)	62, 268, 272, 2304
Cfr13I	GGNCC	5 cut(s)	20, 139, 2244, 2404, 2480
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	7 cut(s)	320, 485, 733, 1222, 1382, 1440, 1484
CspAI	ACCGGT	1 cut(s)	2304
CspCI	CAANNNNNGTGG	2 cut(s)	849, 884
CviQI	GTAC	7 cut(s)	320, 485, 733, 1222, 1382, 1440, 1484
DraI	TTTAAA	1 cut(s)	2143
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	5 cut(s)	163, 171, 180, 336, 2171
EarI	CTCTTC	5 cut(s)	163, 171, 180, 336, 2171
EciI	GGCGGA	2 cut(s)	387, 2446
Ecl136II	GAGCTC	3 cut(s)	147, 626, 1536
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	1509, 1767
Eco147I	AGGCCT	1 cut(s)	2072
Eco24I	GRGCYC	5 cut(s)	149, 628, 1149, 1538, 2345
Eco31I	GGTCTC	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	20, 139
Eco52I	CGGCCG	1 cut(s)	270
Eco53kI	GAGCTC	3 cut(s)	147, 626, 1536
Eco57I	CTGAAG	2 cut(s)	1362, 2152
Eco72I	CACGTG	1 cut(s)	926
Eco88I	CYCGRG	1 cut(s)	1531
EcoICRI	GAGCTC	3 cut(s)	147, 626, 1536
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	2404
EcoRI	GAATTC	1 cut(s)	1777
EcoRII	CCWGG	6 cut(s)	247, 439, 778, 1432, 2353, 2476
EcoT14I	CCWWGG	2 cut(s)	1509, 1767
EcoT22I	ATGCAT	1 cut(s)	2215
EcoT38I	GRGCYC	5 cut(s)	149, 628, 1149, 1538, 2345
ErhI	CCWWGG	2 cut(s)	1509, 1767
Esp3I	CGTCTC	1 cut(s)	202
FalI	AAGNNNNNCTT	2 cut(s)	938, 970
FaqI	GGGAC	3 cut(s)	6, 1857, 2210
FauNDI	CATATG	1 cut(s)	1076
FbaI	TGATCA	2 cut(s)	474, 580
FokI	GGATG	3 cut(s)	539, 1142, 2200
FriOI	GRGCYC	5 cut(s)	149, 628, 1149, 1538, 2345
FspBI	CTAG	5 cut(s)	369, 480, 1910, 2289, 2570
GlaI	GCGC	4 cut(s)	67, 88, 307, 1821
HaeIII	GGCC	7 cut(s)	272, 1081, 2072, 2246, 2405, 2468, 2482
HapII	CCGG	7 cut(s)	63, 269, 273, 287, 311, 614, 2305
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	4 cut(s)	68, 89, 308, 1822
Hin1I	GRCGYC	1 cut(s)	224
Hin6I	GCGC	4 cut(s)	66, 87, 306, 1820
HinP1I	GCGC	4 cut(s)	66, 87, 306, 1820
HincII	GTYRAC	1 cut(s)	1258
HindII	GTYRAC	1 cut(s)	1258
HindIII	AAGCTT	1 cut(s)	1576
HinfI	GANTC	6 cut(s)	213, 432, 1021, 1714, 1722, 1921
HpaII	CCGG	7 cut(s)	63, 269, 273, 287, 311, 614, 2305
HphI	GGTGA	4 cut(s)	736, 882, 1352, 2018
Hpy166II	GTNNAC	4 cut(s)	485, 1093, 1258, 1984
Hpy8I	GTNNAC	4 cut(s)	485, 1093, 1258, 1984
Hpy99I	CGWCG	3 cut(s)	226, 232, 2105
HpyAV	CCTTC	3 cut(s)	592, 996, 1201
HpyCH4III	ACNGT	8 cut(s)	748, 1090, 1153, 1202, 1262, 1564, 2026, 2500
HpyCH4IV	ACGT	4 cut(s)	79, 925, 1179, 1497
HpyCH4V	TGCA	8 cut(s)	530, 674, 766, 1321, 1463, 1469, 1862, 2213
HpySE526I	ACGT	4 cut(s)	79, 925, 1179, 1497
Hsp92I	GRCGYC	1 cut(s)	224
HspAI	GCGC	4 cut(s)	66, 87, 306, 1820
KroI	GCCGGC	2 cut(s)	62, 272
KroNI	GCCGGC	2 cut(s)	64, 274
Ksp22I	TGATCA	2 cut(s)	474, 580
LguI	GCTCTTC	2 cut(s)	163, 336
LmnI	GCTCC	5 cut(s)	313, 623, 631, 2108, 2479
LweI	GCATC	8 cut(s)	517, 1120, 1308, 1849, 1999, 2041, 2200, 2222
MaeI	CTAG	5 cut(s)	369, 480, 1910, 2289, 2570
MaeII	ACGT	4 cut(s)	79, 925, 1179, 1497
MaeIII	GTNAC	5 cut(s)	685, 1084, 1493, 1852, 2236
MfeI	CAATTG	1 cut(s)	1464
MflI	RGATCY	3 cut(s)	365, 394, 2492
MhlI	GDGCHC	5 cut(s)	149, 628, 1149, 1538, 2345
MlyI	GAGTC	2 cut(s)	207, 426
MmeI	TCCRAC	1 cut(s)	538
Mph1103I	ATGCAT	1 cut(s)	2215
MroNI	GCCGGC	2 cut(s)	62, 272
MroXI	GAANNNNTTC	1 cut(s)	809
MseI	TTAA	8 cut(s)	633, 918, 957, 1611, 1802, 1956, 2142, 2312
MspA1I	CMGCKG	3 cut(s)	533, 2285, 2486
MspI	CCGG	7 cut(s)	63, 269, 273, 287, 311, 614, 2305
MspR9I	CCNGG	7 cut(s)	249, 441, 614, 780, 1434, 2355, 2478
MunI	CAATTG	1 cut(s)	1464
Mva1269I	GAATGC	2 cut(s)	1378, 1735
MvaI	CCWGG	6 cut(s)	249, 441, 780, 1434, 2355, 2478
MvnI	CGCG	3 cut(s)	89, 232, 306
NaeI	GCCGGC	2 cut(s)	64, 274
NciI	CCSGG	1 cut(s)	614
NdeI	CATATG	1 cut(s)	1076
NgoMIV	GCCGGC	2 cut(s)	62, 272
NlaIV	GGNNCC	5 cut(s)	12, 22, 1345, 2245, 2406
NmeAIII	GCCGAG	2 cut(s)	18, 23
NmuCI	GTSAC	2 cut(s)	1084, 2236
NruI	TCGCGA	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	2215
NspI	RCATGY	3 cut(s)	1463, 1820, 1853
NspV	TTCGAA	1 cut(s)	572
PaeI	GCATGC	2 cut(s)	1463, 1820
PaeR7I	CTCGAG	1 cut(s)	1531
PagI	TCATGA	2 cut(s)	1866, 1917
PaqCI	CACCTGC	1 cut(s)	2404
PceI	AGGCCT	1 cut(s)	2072
PciI	ACATGT	1 cut(s)	1849
PciSI	GCTCTTC	2 cut(s)	163, 336
PcsI	WCGNNNNNNNCGW	2 cut(s)	1242, 1494
PctI	GAATGC	2 cut(s)	1378, 1735
PdiI	GCCGGC	2 cut(s)	64, 274
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	4 cut(s)	1021, 1714, 1722, 1921
PflFI	GACNNNGTC	1 cut(s)	226
PflMI	CCANNNNNTGG	1 cut(s)	2489
PinAI	ACCGGT	1 cut(s)	2304
PleI	GAGTC	2 cut(s)	207, 426
PmaCI	CACGTG	1 cut(s)	926
PmlI	CACGTG	1 cut(s)	926
PpsI	GAGTC	2 cut(s)	207, 426
Ppu21I	YACGTR	1 cut(s)	926
PscI	ACATGT	1 cut(s)	1849
PsiI	TTATAA	1 cut(s)	2319
Psp124BI	GAGCTC	3 cut(s)	149, 628, 1538
Psp6I	CCWGG	6 cut(s)	247, 439, 778, 1432, 2353, 2476
PspCI	CACGTG	1 cut(s)	926
PspGI	CCWGG	6 cut(s)	247, 439, 778, 1432, 2353, 2476
PspN4I	GGNNCC	5 cut(s)	12, 22, 1345, 2245, 2406
PspPI	GGNCC	5 cut(s)	20, 139, 2244, 2404, 2480
PspXI	VCTCGAGB	1 cut(s)	1531
PstNI	CAGNNNCTG	2 cut(s)	1217, 2477
PsuI	RGATCY	3 cut(s)	365, 394, 2492
PsyI	GACNNNGTC	1 cut(s)	226
PvuII	CAGCTG	3 cut(s)	533, 2285, 2486
RruI	TCGCGA	1 cut(s)	232
RsaI	GTAC	7 cut(s)	321, 486, 734, 1223, 1383, 1441, 1485
RsaNI	GTAC	7 cut(s)	320, 485, 733, 1222, 1382, 1440, 1484
SacI	GAGCTC	3 cut(s)	149, 628, 1538
SapI	GCTCTTC	2 cut(s)	163, 336
SaqAI	TTAA	8 cut(s)	633, 918, 957, 1611, 1802, 1956, 2142, 2312
Sau96I	GGNCC	5 cut(s)	20, 139, 2244, 2404, 2480
SchI	GAGTC	2 cut(s)	207, 426
ScrFI	CCNGG	7 cut(s)	249, 441, 614, 780, 1434, 2355, 2478
SduI	GDGCHC	5 cut(s)	149, 628, 1149, 1538, 2345
SfaNI	GCATC	8 cut(s)	517, 1120, 1308, 1849, 1999, 2041, 2200, 2222
SfcI	CTRYAG	2 cut(s)	453, 2496
Sfr274I	CTCGAG	1 cut(s)	1531
SfuI	TTCGAA	1 cut(s)	572
SinI	GGWCC	2 cut(s)	20, 139
SlaI	CTCGAG	1 cut(s)	1531
SmlI	CTYRAG	3 cut(s)	829, 1531, 2187
SmoI	CTYRAG	3 cut(s)	829, 1531, 2187
SpeI	ACTAGT	1 cut(s)	479
SphI	GCATGC	2 cut(s)	1463, 1820
SseBI	AGGCCT	1 cut(s)	2072
SsiI	CCGC	5 cut(s)	14, 398, 1422, 2444, 2457
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	5 cut(s)	369, 480, 1910, 2289, 2570
SstI	GAGCTC	3 cut(s)	149, 628, 1538
StuI	AGGCCT	1 cut(s)	2072
StyD4I	CCNGG	7 cut(s)	247, 439, 612, 778, 1432, 2353, 2476
StyI	CCWWGG	2 cut(s)	1509, 1767
TaaI	ACNGT	8 cut(s)	748, 1090, 1153, 1202, 1262, 1564, 2026, 2500
TaiI	ACGT	4 cut(s)	82, 928, 1182, 1500
TaqI	TCGA	9 cut(s)	572, 706, 989, 1236, 1406, 1488, 1532, 1781, 2103
TatI	WGTACW	3 cut(s)	1381, 1439, 1483
TauI	GCSGC	1 cut(s)	2446
TfiI	GAWTC	4 cut(s)	1021, 1714, 1722, 1921
Tru1I	TTAA	8 cut(s)	633, 918, 957, 1611, 1802, 1956, 2142, 2312
Tru9I	TTAA	8 cut(s)	633, 918, 957, 1611, 1802, 1956, 2142, 2312
TscAI	CASTG	3 cut(s)	1093, 1258, 1627
TseFI	GTSAC	2 cut(s)	1084, 2236
Tsp45I	GTSAC	2 cut(s)	1084, 2236
TspDTI	ATGAA	5 cut(s)	984, 1610, 1964, 2123, 2220
TspGWI	ACGGA	2 cut(s)	1428, 2206
TspRI	CASTG	3 cut(s)	1093, 1258, 1627
Tth111I	GACNNNGTC	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	2489
VpaK11BI	GGWCC	2 cut(s)	20, 139
XagI	CCTNNNNNAGG	1 cut(s)	134
XapI	RAATTY	4 cut(s)	537, 1757, 1777, 1952
XceI	RCATGY	3 cut(s)	1463, 1820, 1853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	783
XhoI	CTCGAG	1 cut(s)	1531
XmnI	GAANNNNTTC	1 cut(s)	809
XspI	CTAG	5 cut(s)	369, 480, 1910, 2289, 2570
Zsp2I	ATGCAT	1 cut(s)	2215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.