AT3G51860

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
19239305 .. 19242913
3609 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51860.1

Sequence Viewer

Length: 1380 bp
ATGGGAAGTATCGTGGAGCCATGGGCAGCAATCGCCGAGAACGGAAACGCAAACGTGACCGCGAAAGGCTCGAGCAGGGAGCTGCGACATGGGAGAACAGCACACAACATGTCTTCATCGTCGCTAAGGAAGAAATCAGACCTGAGATTGGTTCAGAAAGTTCCATGCAAAACTCTCAAGAACATTCTCTCTAATCTTCAAGAAGTCATTCTTGGTACTAAGCTTACTCTCTTATTTCTCGCCATCCCTCTCGCCATTCTTGCCAATTCTTACAACTACGGTCGTCCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCTCTAGCTGAGCGAGTTAGCTTTTTGACAGAGCAACTAGCTTTCTACACTGGTCCAACAGTGGGCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCGCGATACTAGCGTTGGCCAATAACAAAGTGGCAGTGGTGAAATACTCTCTATTGGGTTCAATTCTCTCAAACCTTCTCTTGGTTCTTGGCACTTCCCTCTTCTTTGGTGGTATCGCCAATATCCGCCGCGAGCAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTGCTGCTTATGGGCCTGTTGTGTCATTTGCTGCCATTATTGTTAAAATATGCAGCAACCGGCGAAGTATCGACCTCTATGATTAACAAAATGTCGCTCACTCTGTCGCGGACAAGCAGCATAGTTATGCTTATTGCTTACATTGCTTATCTCATCTTCCAGCTCTGGACTCACCGCCAATTGTTTGAGGCACAACAGGATGATGATGATGCATATGATGATGAGGTTAGTGTTGAAGAAACTCCAGTGATAGGATTCTGGAGCGGATTTGCTTGGCTCGTTGGGATGACAATAGTCATCGCATTGCTATCAGAGTATGTTGTGGACACGATCGAGGATGCATCGGACTCATGGGGACTATCAGTGAGTTTCATAAGCATCATATTGCTTCCCATTGTTGGGAATGCGGCTGAGCATGCTGGAGCCATCATTTTCGCATTCAAGAACAAGCTCGACATATCTCTAGGGGTTGCGTTGGGCTCTGCAACTCAGATTTCTTTGTTCGTGGTCCCATTGAGTGTTATCGTTGCGTGGATCCTGGGAATAAAAATGGATCTCAACTTTAACATCCTTGAAACTAGCTCTCTAGCTTTGGCCATTATCATCACAGCCTTCACTTTACAGGATGGAACTTCTCATTACATGAAGGGACTGGTTCTATTGTTATGCTATGTCATCATCGCGGCGTGTTTCTTCGTCGACCAAATTCCCCAACCAAATGATTTGGACGTGGGACTTCAACCCATGAACAATTTGGGAGAAGTTTTCTCAGCTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

459

Amino Acids

49.85

Weight (kDa)

5.44

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 97 - 257 1.7e-20 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 290 - 433 5.6e-22 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 867
AccI GTMKAC 1 cut(s) 1302
AccII CGCG 7 cut(s) 62, 401, 416, 434, 561, 712, 1286
AclWI GGATC 3 cut(s) 1132, 1145, 1164
AcoI YGGCCR 2 cut(s) 447, 1197
AcsI RAATTY 1 cut(s) 1308
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 6 cut(s) 148, 383, 511, 854, 1001, 1002
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 7 cut(s) 200, 397, 492, 839, 1045, 1178, 1343
AjiI CACGTC 1 cut(s) 1333
AjnI CCWGG 1 cut(s) 1140
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AlwI GGATC 3 cut(s) 1132, 1145, 1164
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 3 cut(s) 447, 616, 1197
ApeKI GCWGC 7 cut(s) 26, 82, 565, 607, 634, 656, 720
ApoI RAATTY 1 cut(s) 1308
Asp700I GAANNNNTTC 2 cut(s) 207, 599
AspS9I GGNCC 3 cut(s) 374, 616, 1111
AsuHPI GGTGA 2 cut(s) 481, 767
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 2 cut(s) 374, 1111
BaeI ACNNNNGTAYC 2 cut(s) 428, 461
BalI TGGCCA 2 cut(s) 449, 1199
BamHI GGATCC 1 cut(s) 1137
BanII GRGCYC 1 cut(s) 1085
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 7 cut(s) 38, 69, 577, 594, 621, 668, 732
BccI CCATC 3 cut(s) 251, 1037, 1223
BciT130I CCWGG 1 cut(s) 1142
BfaI CTAG 6 cut(s) 326, 359, 440, 1067, 1182, 1190
BlpI GCTNAGC 2 cut(s) 330, 1014
Bme1390I CCNGG 1 cut(s) 1142
Bme18I GGWCC 2 cut(s) 374, 1111
BmeT110I CYCGRG 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 1333
BmgT120I GGNCC 3 cut(s) 374, 616, 1111
BmiI GGNNCC 4 cut(s) 18, 1027, 1113, 1139
BmrFI CCNGG 1 cut(s) 1142
BmsI GCATC 4 cut(s) 802, 931, 953, 990
BoxI GACNNNNGTC 1 cut(s) 896
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 3 cut(s) 831, 883, 1044
Bpu10I CCTNAGC 1 cut(s) 125
Bpu1102I GCTNAGC 2 cut(s) 330, 1014
BpuEI CTTGAG 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 20, 1141
BsaWI WCCGGW 1 cut(s) 576
Bsc4I CCNNNNNNNGG 6 cut(s) 148, 383, 511, 854, 1001, 1002
Bse118I RCCGGY 1 cut(s) 662
Bse1I ACTGG 3 cut(s) 376, 848, 1260
Bse3DI GCAATG 2 cut(s) 744, 905
BseBI CCWGG 1 cut(s) 1142
BseDI CCNNGG 2 cut(s) 20, 1141
BseGI GGATG 6 cut(s) 243, 808, 894, 946, 1170, 1234
BseLI CCNNNNNNNGG 6 cut(s) 148, 383, 511, 854, 1001, 1002
BseMI GCAATG 2 cut(s) 744, 905
BseMII CTCAG 5 cut(s) 134, 293, 321, 1005, 1106
BseNI ACTGG 3 cut(s) 376, 848, 1260
BseXI GCAGC 7 cut(s) 38, 69, 577, 594, 621, 668, 732
Bsh1236I CGCG 7 cut(s) 62, 401, 416, 434, 561, 712, 1286
Bsh1285I CGRYCG 3 cut(s) 283, 577, 936
BshFI GGCC 3 cut(s) 449, 618, 1199
BsiEI CGRYCG 3 cut(s) 283, 577, 936
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 2 cut(s) 577, 663
BslFI GGGAC 4 cut(s) 972, 1097, 1266, 1350
BslI CCNNNNNNNGG 6 cut(s) 148, 383, 511, 854, 1001, 1002
BsmFI GGGAC 4 cut(s) 972, 1097, 1266, 1350
BsmI GAATGC 2 cut(s) 1012, 1040
BsnI GGCC 3 cut(s) 449, 618, 1199
BsoBI CYCGRG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 1085
Bsp143I GATC 3 cut(s) 933, 1137, 1156
Bsp1720I GCTNAGC 2 cut(s) 330, 1014
Bsp19I CCATGG 1 cut(s) 20
Bsp68I TCGCGA 1 cut(s) 434
BspANI GGCC 3 cut(s) 449, 618, 1199
BspCNI CTCAG 5 cut(s) 135, 294, 322, 1006, 1105
BspFNI CGCG 7 cut(s) 62, 401, 416, 434, 561, 712, 1286
BspLI GGNNCC 4 cut(s) 18, 1027, 1113, 1139
BspPI GGATC 3 cut(s) 1132, 1145, 1164
BsrBI CCGCTC 1 cut(s) 867
BsrDI GCAATG 2 cut(s) 744, 905
BsrFI RCCGGY 1 cut(s) 662
BsrI ACTGG 3 cut(s) 376, 848, 1260
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 2 cut(s) 20, 1141
BssMI GATC 3 cut(s) 933, 1137, 1156
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 1142
Bst4CI ACNGT 2 cut(s) 281, 382
Bst6I CTCTTC 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 563, 1020
BstDEI CTNAG 8 cut(s) 125, 143, 219, 302, 330, 1014, 1092, 1372
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 6 cut(s) 243, 808, 894, 946, 1170, 1234
BstFNI CGCG 7 cut(s) 62, 401, 416, 434, 561, 712, 1286
BstKTI GATC 3 cut(s) 936, 1140, 1159
BstMBI GATC 3 cut(s) 933, 1137, 1156
BstMCI CGRYCG 3 cut(s) 283, 577, 936
BstMWI GCNNNNNNNGC 5 cut(s) 32, 260, 440, 746, 1019
BstNI CCWGG 1 cut(s) 1142
BstNSI RCATGY 2 cut(s) 112, 1022
BstPAI GACNNNNGTC 1 cut(s) 896
BstSCI CCNGG 1 cut(s) 1140
BstUI CGCG 7 cut(s) 62, 401, 416, 434, 561, 712, 1286
BstV1I GCAGC 7 cut(s) 38, 69, 577, 594, 621, 668, 732
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 2 cut(s) 1137, 1156
BstYI RGATCY 2 cut(s) 1137, 1156
BsuRI GGCC 3 cut(s) 449, 618, 1199
BtgI CCRYGG 1 cut(s) 20
BtgZI GCGATG 2 cut(s) 886, 1267
BtrI CACGTC 1 cut(s) 1333
BtsCI GGATG 6 cut(s) 243, 808, 894, 946, 1170, 1234
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 5 cut(s) 369, 387, 471, 855, 972
BtuMI TCGCGA 1 cut(s) 434
Cac8I GCNNGC 2 cut(s) 563, 1020
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 3 cut(s) 374, 616, 1111
Csp6I GTAC 1 cut(s) 216
CviAII CATG 8 cut(s) 21, 89, 109, 165, 954, 1019, 1246, 1348
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 8 cut(s) 125, 143, 219, 302, 330, 1014, 1092, 1372
DpnI GATC 3 cut(s) 935, 1139, 1158
DpnII GATC 3 cut(s) 933, 1137, 1156
EaeI YGGCCR 2 cut(s) 447, 1197
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
EciI GGCGGA 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 1085
Eco47I GGWCC 2 cut(s) 374, 1111
Eco88I CYCGRG 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 1140
EcoT14I CCWWGG 1 cut(s) 20
EcoT22I ATGCAT 2 cut(s) 817, 946
EcoT38I GRGCYC 1 cut(s) 1085
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 8 cut(s) 24, 92, 112, 168, 957, 1022, 1249, 1351
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 4 cut(s) 972, 1097, 1266, 1350
FatI CATG 8 cut(s) 20, 88, 108, 164, 953, 1018, 1245, 1347
FauNDI CATATG 1 cut(s) 817
FblI GTMKAC 1 cut(s) 1302
FokI GGATG 6 cut(s) 230, 815, 901, 953, 1157, 1241
FriOI GRGCYC 1 cut(s) 1085
FspBI CTAG 6 cut(s) 326, 359, 440, 1067, 1182, 1190
GsuI CTGGAG 3 cut(s) 831, 883, 1044
HaeIII GGCC 3 cut(s) 449, 618, 1199
HapII CCGG 2 cut(s) 577, 663
Hin1II CATG 8 cut(s) 24, 92, 112, 168, 957, 1022, 1249, 1351
HincII GTYRAC 1 cut(s) 1303
HindII GTYRAC 1 cut(s) 1303
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 772, 858, 950
HpaII CCGG 2 cut(s) 577, 663
HphI GGTGA 2 cut(s) 481, 767
Hpy166II GTNNAC 3 cut(s) 595, 928, 1303
Hpy188I TCNGA 5 cut(s) 139, 156, 916, 949, 1095
Hpy188III TCNNGA 6 cut(s) 178, 200, 433, 769, 862, 1045
Hpy8I GTNNAC 3 cut(s) 595, 928, 1303
Hpy99I CGWCG 2 cut(s) 124, 1304
HpyAV CCTTC 3 cut(s) 515, 1225, 1243
HpyCH4III ACNGT 2 cut(s) 281, 382
HpyCH4IV ACGT 2 cut(s) 54, 1332
HpyCH4V TGCA 5 cut(s) 168, 656, 815, 944, 1088
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 260, 440, 746, 1019
HpyF3I CTNAG 8 cut(s) 125, 143, 219, 302, 330, 1014, 1092, 1372
HpySE526I ACGT 2 cut(s) 54, 1332
Hsp92II CATG 8 cut(s) 24, 92, 112, 168, 957, 1022, 1249, 1351
Kzo9I GATC 3 cut(s) 933, 1137, 1156
LmnI GCTCC 4 cut(s) 16, 79, 864, 1025
Lsp1109I GCAGC 7 cut(s) 38, 69, 577, 594, 621, 668, 732
LweI GCATC 4 cut(s) 802, 931, 953, 990
MaeI CTAG 6 cut(s) 326, 359, 440, 1067, 1182, 1190
MaeII ACGT 2 cut(s) 54, 1332
MaeIII GTNAC 1 cut(s) 55
MalI GATC 3 cut(s) 935, 1139, 1158
MbiI CCGCTC 1 cut(s) 867
MboI GATC 3 cut(s) 933, 1137, 1156
MboII GAAGA 8 cut(s) 105, 142, 188, 523, 592, 751, 851, 1288
MfeI CAATTG 1 cut(s) 782
MflI RGATCY 2 cut(s) 1137, 1156
MhlI GDGCHC 1 cut(s) 1085
MlsI TGGCCA 2 cut(s) 449, 1199
MluCI AATT 5 cut(s) 265, 492, 782, 1308, 1354
MluNI TGGCCA 2 cut(s) 449, 1199
MlyI GAGTC 2 cut(s) 766, 944
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 7 cut(s) 258, 333, 539, 688, 784, 820, 931
Mox20I TGGCCA 2 cut(s) 449, 1199
Mph1103I ATGCAT 2 cut(s) 817, 946
MroXI GAANNNNTTC 2 cut(s) 207, 599
MscI TGGCCA 2 cut(s) 449, 1199
MseI TTAA 4 cut(s) 647, 687, 1167, 1378
MslI CAYNNNNRTG 1 cut(s) 728
Msp20I TGGCCA 2 cut(s) 449, 1199
MspA1I CMGCKG 1 cut(s) 568
MspI CCGG 2 cut(s) 577, 663
MspR9I CCNGG 1 cut(s) 1142
MunI CAATTG 1 cut(s) 782
Mva1269I GAATGC 2 cut(s) 1012, 1040
MvaI CCWGG 1 cut(s) 1142
MvnI CGCG 7 cut(s) 62, 401, 416, 434, 561, 712, 1286
MwoI GCNNNNNNNGC 5 cut(s) 32, 260, 440, 746, 1019
NcoI CCATGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 817
NdeII GATC 3 cut(s) 933, 1137, 1156
NlaIII CATG 8 cut(s) 24, 92, 112, 168, 957, 1022, 1249, 1351
NlaIV GGNNCC 4 cut(s) 18, 1027, 1113, 1139
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 55
NruI TCGCGA 1 cut(s) 434
NsiI ATGCAT 2 cut(s) 817, 946
NspI RCATGY 2 cut(s) 112, 1022
PaeI GCATGC 1 cut(s) 1022
PaeR7I CTCGAG 1 cut(s) 70
PciI ACATGT 1 cut(s) 108
PctI GAATGC 2 cut(s) 1012, 1040
PdmI GAANNNNTTC 2 cut(s) 207, 599
PfeI GAWTC 1 cut(s) 858
Ple19I CGATCG 1 cut(s) 936
PleI GAGTC 2 cut(s) 766, 944
PpsI GAGTC 2 cut(s) 766, 944
PscI ACATGT 1 cut(s) 108
PshAI GACNNNNGTC 1 cut(s) 896
Psp6I CCWGG 1 cut(s) 1140
PspGI CCWGG 1 cut(s) 1140
PspN4I GGNNCC 4 cut(s) 18, 1027, 1113, 1139
PspPI GGNCC 3 cut(s) 374, 616, 1111
PspXI VCTCGAGB 1 cut(s) 70
PsuI RGATCY 2 cut(s) 1137, 1156
PvuI CGATCG 1 cut(s) 936
RruI TCGCGA 1 cut(s) 434
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 728
SalI GTCGAC 1 cut(s) 1301
SaqAI TTAA 4 cut(s) 647, 687, 1167, 1378
Sau3AI GATC 3 cut(s) 933, 1137, 1156
Sau96I GGNCC 3 cut(s) 374, 616, 1111
SchI GAGTC 2 cut(s) 766, 944
ScrFI CCNGG 1 cut(s) 1142
SduI GDGCHC 1 cut(s) 1085
SfaNI GCATC 4 cut(s) 802, 931, 953, 990
Sfr274I CTCGAG 1 cut(s) 70
SinI GGWCC 2 cut(s) 374, 1111
SlaI CTCGAG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 728
SmlI CTYRAG 2 cut(s) 70, 176
SmoI CTYRAG 2 cut(s) 70, 176
SphI GCATGC 1 cut(s) 1022
Sse9I AATT 5 cut(s) 265, 492, 782, 1308, 1354
SspMI CTAG 6 cut(s) 326, 359, 440, 1067, 1182, 1190
StyD4I CCNGG 1 cut(s) 1140
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 281, 382
TaiI ACGT 2 cut(s) 57, 1335
TaqI TCGA 6 cut(s) 71, 573, 674, 936, 1056, 1302
TasI AATT 5 cut(s) 265, 492, 782, 1308, 1354
TauI GCSGC 3 cut(s) 561, 1013, 1289
TfiI GAWTC 1 cut(s) 858
Tru1I TTAA 4 cut(s) 647, 687, 1167, 1378
Tru9I TTAA 4 cut(s) 647, 687, 1167, 1378
TscAI CASTG 5 cut(s) 376, 387, 471, 855, 972
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 7 cut(s) 26, 82, 565, 607, 634, 656, 720
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 105, 964, 1262, 1364
TspGWI ACGGA 2 cut(s) 57, 276
TspRI CASTG 5 cut(s) 376, 387, 471, 855, 972
VpaK11BI GGWCC 2 cut(s) 374, 1111
XapI RAATTY 1 cut(s) 1308
XceI RCATGY 2 cut(s) 112, 1022
XcmI CCANNNNNNNNNTGG 2 cut(s) 457, 1354
XhoI CTCGAG 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 1302
XmnI GAANNNNTTC 2 cut(s) 207, 599
XspI CTAG 6 cut(s) 326, 359, 440, 1067, 1182, 1190
Zsp2I ATGCAT 2 cut(s) 817, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.