FvH4_3g38530

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
32875945 .. 32880278
4334 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38530.t1

Sequence Viewer

Length: 1404 bp
ATGGGATCACAAGAGGATTTCATCATCAACAACATTGAGAATGGAATCGACGATCATCGTAAGGGTTTAGTAAGCGGGACTAATAATATGAATGGTGTTGATCAGAATAATAAGGAGCAATGGAGTGTTGGGAAGACGCCGCAAAACTTGTCATCCTCCATGGTACGCAAAAAGTCCGATCCGATTATTGTTTCCAATGTTCGTTTCCAAATGCTCAGAAATTTTCTGAACAATTTGCAAGAGGTGATTCTTGGTACTAAGCTCGCCGTGCTTTTTCCGGCCATTCCCCTCGCAATTGCGGCCGATTTTTACCACTTCGGAAGACCTTGGGTTTTTGCTTTGAGTTTGTTGGGACTCACTCCGCTTGCTGAACGTGTCAGCTTCCTCACTGAACAAATTGCGTACTTCACTGGTCCAACAGTTGGGGGACTTCTAAATGCAACGTGTGGAAATGCAACAGAGATGATAATAGCACTATTTGCTCTACATGAGAACAAAATAGATGTTGTCAAGTATTCCTTATTGGGTTCCATTCTGTCAAACCTCCTCCTTGTTCTTGGCACCTCTCTACTTTGTGGAGGCTTGGCCAACATTAAAAAGGAACAAAGATATGATAGAAAACAGGCTGATGTTAATTCACTGCTGCTACTGCTGGGGTTACTATGCCACATGTTGCCACTTATGTTCAGATATGCCTCAGGAGTTGGCGATTCCTATGCCACCTCCACTCTTCAGTTGTCAAGAACAAGCAGCATTTTTATGCTTATTGCATATGTTGCTTATATCTTCTTCCAGTTGAAAACACACCGTCAAGTGTTTGGTTCAGAAGAGGAAGATGATGAAGATGAAGAGAAAGCAGTGATAGGATGTTGGAGTGCATTTGGTTGGCTGGCTGGTATGACAATTATCATAGCGCTCTTGTCTGAGTATGTTGTGGGCACAATTGAGGCTGCATCAAACTCTTGGGGCATTTCTGTGACCTTTATCAGCATTATTTTGCTACCAATTGTGGGAAATGCAGCAGAACATGCTGGATCAATCATATTTGCTCTCAAGAACAAGTTGGACATATCCTTGGGTGTTTCTTTAGGTTCTGCATCTCAAATCTCCATGTTTGTGGTCCCTTTAAGTGTGATTGTTGCTTGGATCATGGGGATTGAAATGGATCTTGATTTTAGTCTCCTTGAAACTGGGTCTCTTGCTTTCACAATAATCATCACAGCCTTTACATTGCAGGATGGAACTTCACATTATTTGAAAGGAGTCATTCTTTTCCTCTGCTACATTATTATTGCTGCTTGCTTCTTTGTTGACAAAAGGCCCATGAATGATTCAAATGGGAGCAATTTGGAGAATGTACTTGAATTATCTTCCAACTATTATGCCGGAGTCTTGTTTGCTTGA

Protein Analysis

468

Amino Acids

51.05

Weight (kDa)

5.08

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 110 - 266 7.6e-22 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 293 - 436 1.2e-19 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 560
AccB7I CCANNNNNTGG 1 cut(s) 422
AciI CCGC 4 cut(s) 75, 140, 299, 362
AclWI GGATC 5 cut(s) 13, 173, 1042, 1154, 1173
AcoI YGGCCR 3 cut(s) 279, 300, 585
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 716
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 4 cut(s) 165, 256, 404, 1359
AfeI AGCGCT 1 cut(s) 915
AfiI CCNNNNNNNGG 2 cut(s) 422, 1010
AflIII ACRYGT 3 cut(s) 373, 443, 669
AgsI TTSAA 6 cut(s) 799, 1160, 1187, 1258, 1335, 1364
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 2 cut(s) 262, 381
AluI AGCT 2 cut(s) 262, 381
Alw26I GTCTC 2 cut(s) 1184, 1200
AlwI GGATC 5 cut(s) 13, 173, 1042, 1154, 1173
Aor51HI AGCGCT 1 cut(s) 915
AoxI GGCC 4 cut(s) 279, 300, 585, 1319
ApeKI GCWGC 5 cut(s) 643, 750, 950, 1019, 1295
ApoI RAATTY 1 cut(s) 220
AspLEI GCGC 1 cut(s) 916
AspS9I GGNCC 3 cut(s) 413, 1120, 1320
AsuHPI GGTGA 1 cut(s) 256
AvaII GGWCC 2 cut(s) 413, 1120
AxyI CCTNAGG 1 cut(s) 697
BaeGI GKGCMC 1 cut(s) 941
BalI TGGCCA 1 cut(s) 587
BanI GGYRCC 1 cut(s) 560
BbsI GAAGAC 2 cut(s) 140, 328
BbvI GCAGC 5 cut(s) 630, 762, 937, 1031, 1282
BccI CCATC 1 cut(s) 1232
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 1184, 1200
BfoI RGCGCY 1 cut(s) 917
BisI GCNGC 7 cut(s) 140, 300, 644, 751, 951, 1020, 1296
BlsI GCNGC 7 cut(s) 141, 301, 645, 752, 952, 1021, 1297
Bme18I GGWCC 2 cut(s) 413, 1120
BmgT120I GGNCC 3 cut(s) 413, 1120, 1320
BmiI GGNNCC 3 cut(s) 529, 562, 1122
BmrI ACTGGG 1 cut(s) 1200
BmsI GCATC 2 cut(s) 962, 1106
BmuI ACTGGG 1 cut(s) 1200
BpiI GAAGAC 2 cut(s) 140, 328
BpuEI CTTGAG 1 cut(s) 1037
BsaHI GRCGYC 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 1200
BsaJI CCNNGG 3 cut(s) 159, 326, 1074
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 1010
Bse1I ACTGG 3 cut(s) 415, 793, 1195
Bse21I CCTNAGG 1 cut(s) 697
Bse3DI GCAATG 2 cut(s) 125, 1229
BseDI CCNNGG 3 cut(s) 159, 326, 1074
BseGI GGATG 3 cut(s) 152, 872, 1243
BseLI CCNNNNNNNGG 2 cut(s) 422, 1010
BseMI GCAATG 2 cut(s) 125, 1229
BseMII CTCAG 3 cut(s) 229, 711, 915
BseNI ACTGG 3 cut(s) 415, 793, 1195
BseRI GAGGAG 1 cut(s) 536
BseSI GKGCMC 1 cut(s) 941
BseX3I CGGCCG 1 cut(s) 300
BseXI GCAGC 5 cut(s) 630, 762, 937, 1031, 1282
BseYI CCCAGC 1 cut(s) 652
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 4 cut(s) 281, 302, 587, 1321
BshNI GGYRCC 1 cut(s) 560
BsiEI CGRYCG 1 cut(s) 303
BsiSI CCGG 2 cut(s) 278, 1386
BslFI GGGAC 4 cut(s) 91, 366, 441, 1106
BslI CCNNNNNNNGG 2 cut(s) 422, 1010
BsmAI GTCTC 2 cut(s) 1184, 1200
BsmFI GGGAC 4 cut(s) 91, 366, 441, 1106
BsnI GGCC 4 cut(s) 281, 302, 587, 1321
Bso31I GGTCTC 1 cut(s) 1200
Bsp1286I GDGCHC 1 cut(s) 941
Bsp143I GATC 7 cut(s) 5, 52, 100, 178, 1034, 1146, 1165
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 4 cut(s) 75, 140, 299, 362
BspANI GGCC 4 cut(s) 281, 302, 587, 1321
BspCNI CTCAG 3 cut(s) 228, 710, 916
BspLI GGNNCC 3 cut(s) 529, 562, 1122
BspPI GGATC 5 cut(s) 13, 173, 1042, 1154, 1173
BspT107I GGYRCC 1 cut(s) 560
BspTNI GGTCTC 1 cut(s) 1200
BsrDI GCAATG 2 cut(s) 125, 1229
BsrI ACTGG 3 cut(s) 415, 793, 1195
BssECI CCNNGG 3 cut(s) 159, 326, 1074
BssMI GATC 7 cut(s) 5, 52, 100, 178, 1034, 1146, 1165
BssNI GRCGYC 1 cut(s) 137
BssT1I CCWWGG 3 cut(s) 159, 326, 1074
Bst4CI ACNGT 2 cut(s) 421, 809
Bst6I CTCTTC 3 cut(s) 735, 822, 843
BstACI GRCGYC 1 cut(s) 137
BstAPI GCANNNNNTGC 3 cut(s) 479, 776, 1028
BstC8I GCNNGC 4 cut(s) 264, 366, 891, 1300
BstDEI CTNAG 4 cut(s) 215, 258, 697, 924
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 152, 872, 1243
BstH2I RGCGCY 1 cut(s) 917
BstHHI GCGC 1 cut(s) 916
BstKTI GATC 7 cut(s) 8, 55, 103, 181, 1037, 1149, 1168
BstMAI GTCTC 2 cut(s) 1184, 1200
BstMBI GATC 7 cut(s) 5, 52, 100, 178, 1034, 1146, 1165
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 6 cut(s) 268, 299, 479, 649, 776, 1028
BstNSI RCATGY 2 cut(s) 673, 1031
BstSLI GKGCMC 1 cut(s) 941
BstV1I GCAGC 5 cut(s) 630, 762, 937, 1031, 1282
BstV2I GAAGAC 2 cut(s) 140, 328
BstX2I RGATCY 1 cut(s) 1165
BstXI CCANNNNNNTGG 1 cut(s) 1117
BstYI RGATCY 1 cut(s) 1165
BstZI CGGCCG 1 cut(s) 300
Bsu36I CCTNAGG 1 cut(s) 697
BsuRI GGCC 4 cut(s) 281, 302, 587, 1321
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 3 cut(s) 152, 872, 1243
BtsI GCAGTG 2 cut(s) 638, 864
BtsIMutI CAGTG 4 cut(s) 387, 408, 638, 864
Cac8I GCNNGC 4 cut(s) 264, 366, 891, 1300
CfoI GCGC 1 cut(s) 916
Cfr13I GGNCC 3 cut(s) 413, 1120, 1320
CseI GACGC 1 cut(s) 145
Csp6I GTAC 4 cut(s) 164, 255, 403, 1358
CviAII CATG 7 cut(s) 160, 488, 670, 1028, 1111, 1150, 1324
CviQI GTAC 4 cut(s) 164, 255, 403, 1358
DdeI CTNAG 4 cut(s) 215, 258, 697, 924
DpnI GATC 7 cut(s) 7, 54, 102, 180, 1036, 1148, 1167
DpnII GATC 7 cut(s) 5, 52, 100, 178, 1034, 1146, 1165
EaeI YGGCCR 3 cut(s) 279, 300, 585
EagI CGGCCG 1 cut(s) 300
Eam1104I CTCTTC 3 cut(s) 735, 822, 843
EarI CTCTTC 3 cut(s) 735, 822, 843
EclXI CGGCCG 1 cut(s) 300
Eco130I CCWWGG 3 cut(s) 159, 326, 1074
Eco31I GGTCTC 1 cut(s) 1200
Eco47I GGWCC 2 cut(s) 413, 1120
Eco47III AGCGCT 1 cut(s) 915
Eco52I CGGCCG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 716
Eco81I CCTNAGG 1 cut(s) 697
EcoT14I CCWWGG 3 cut(s) 159, 326, 1074
ErhI CCWWGG 3 cut(s) 159, 326, 1074
FaeI CATG 7 cut(s) 163, 491, 673, 1031, 1114, 1153, 1327
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 4 cut(s) 91, 366, 441, 1106
FatI CATG 7 cut(s) 159, 487, 669, 1027, 1110, 1149, 1323
FauI CCCGC 1 cut(s) 68
FauNDI CATATG 1 cut(s) 772
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 7 cut(s) 140, 300, 644, 751, 951, 1020, 1296
FokI GGATG 3 cut(s) 139, 879, 1250
Fsp4HI GCNGC 7 cut(s) 140, 300, 644, 751, 951, 1020, 1296
GlaI GCGC 1 cut(s) 915
GluI GCNGC 7 cut(s) 140, 300, 644, 751, 951, 1020, 1296
GsaI CCCAGC 1 cut(s) 656
HaeII RGCGCY 1 cut(s) 917
HaeIII GGCC 4 cut(s) 281, 302, 587, 1321
HapII CCGG 2 cut(s) 278, 1386
HgaI GACGC 1 cut(s) 145
HhaI GCGC 1 cut(s) 916
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 7 cut(s) 163, 491, 673, 1031, 1114, 1153, 1327
Hin6I GCGC 1 cut(s) 914
HinP1I GCGC 1 cut(s) 914
HincII GTYRAC 1 cut(s) 1312
HindII GTYRAC 1 cut(s) 1312
HinfI GANTC 7 cut(s) 45, 247, 354, 710, 1263, 1331, 1389
HpaII CCGG 2 cut(s) 278, 1386
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 1312
Hpy188I TCNGA 9 cut(s) 105, 178, 183, 218, 228, 320, 689, 826, 925
Hpy188III TCNNGA 4 cut(s) 699, 741, 1054, 1169
Hpy8I GTNNAC 1 cut(s) 1312
Hpy99I CGWCG 1 cut(s) 53
HpyCH4III ACNGT 2 cut(s) 421, 809
HpyCH4IV ACGT 2 cut(s) 373, 443
HpyCH4V TGCA 9 cut(s) 238, 440, 455, 770, 878, 953, 1019, 1097, 1234
HpyF10VI GCNNNNNNNGC 6 cut(s) 268, 299, 479, 649, 776, 1028
HpyF3I CTNAG 4 cut(s) 215, 258, 697, 924
HpySE526I ACGT 2 cut(s) 373, 443
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 7 cut(s) 163, 491, 673, 1031, 1114, 1153, 1327
HspAI GCGC 1 cut(s) 914
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 7 cut(s) 5, 52, 100, 178, 1034, 1146, 1165
LmnI GCTCC 2 cut(s) 115, 1341
Lsp1109I GCAGC 5 cut(s) 630, 762, 937, 1031, 1282
LweI GCATC 2 cut(s) 962, 1106
MaeII ACGT 2 cut(s) 373, 443
MaeIII GTNAC 2 cut(s) 657, 976
MalI GATC 7 cut(s) 7, 54, 102, 180, 1036, 1148, 1167
MboI GATC 7 cut(s) 5, 52, 100, 178, 1034, 1146, 1165
MfeI CAATTG 3 cut(s) 294, 942, 1005
MflI RGATCY 1 cut(s) 1165
MhlI GDGCHC 1 cut(s) 941
MlsI TGGCCA 1 cut(s) 587
MluNI TGGCCA 1 cut(s) 587
MlyI GAGTC 3 cut(s) 348, 1272, 1398
MmeI TCCRAC 4 cut(s) 440, 851, 1044, 1398
Mox20I TGGCCA 1 cut(s) 587
MscI TGGCCA 1 cut(s) 587
MseI TTAA 3 cut(s) 594, 633, 1127
MslI CAYNNNNRTG 3 cut(s) 758, 974, 1115
Msp20I TGGCCA 1 cut(s) 587
MspI CCGG 2 cut(s) 278, 1386
MunI CAATTG 3 cut(s) 294, 942, 1005
MwoI GCNNNNNNNGC 6 cut(s) 268, 299, 479, 649, 776, 1028
NcoI CCATGG 1 cut(s) 159
NdeI CATATG 1 cut(s) 772
NdeII GATC 7 cut(s) 5, 52, 100, 178, 1034, 1146, 1165
NlaIII CATG 7 cut(s) 163, 491, 673, 1031, 1114, 1153, 1327
NlaIV GGNNCC 3 cut(s) 529, 562, 1122
NmuCI GTSAC 1 cut(s) 976
NspI RCATGY 2 cut(s) 673, 1031
PciI ACATGT 1 cut(s) 669
PfeI GAWTC 4 cut(s) 45, 247, 710, 1331
PflMI CCANNNNNTGG 1 cut(s) 422
PkrI GCNGC 7 cut(s) 141, 301, 645, 752, 952, 1021, 1297
PleI GAGTC 3 cut(s) 348, 1271, 1397
PpsI GAGTC 3 cut(s) 348, 1271, 1397
PscI ACATGT 1 cut(s) 669
PspFI CCCAGC 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 529, 562, 1122
PspPI GGNCC 3 cut(s) 413, 1120, 1320
PsuI RGATCY 1 cut(s) 1165
RsaI GTAC 4 cut(s) 165, 256, 404, 1359
RsaNI GTAC 4 cut(s) 164, 255, 403, 1358
RseI CAYNNNNRTG 3 cut(s) 758, 974, 1115
SaqAI TTAA 3 cut(s) 594, 633, 1127
SatI GCNGC 7 cut(s) 140, 300, 644, 751, 951, 1020, 1296
Sau3AI GATC 7 cut(s) 5, 52, 100, 178, 1034, 1146, 1165
Sau96I GGNCC 3 cut(s) 413, 1120, 1320
SchI GAGTC 3 cut(s) 348, 1272, 1398
SduI GDGCHC 1 cut(s) 941
SfaNI GCATC 2 cut(s) 962, 1106
SinI GGWCC 2 cut(s) 413, 1120
SmiMI CAYNNNNRTG 3 cut(s) 758, 974, 1115
SmlI CTYRAG 1 cut(s) 1052
SmoI CTYRAG 1 cut(s) 1052
SsiI CCGC 4 cut(s) 75, 140, 299, 362
StyI CCWWGG 3 cut(s) 159, 326, 1074
TaaI ACNGT 2 cut(s) 421, 809
TaiI ACGT 2 cut(s) 376, 446
TaqI TCGA 1 cut(s) 48
TatI WGTACW 1 cut(s) 1357
TauI GCSGC 2 cut(s) 142, 302
TfiI GAWTC 4 cut(s) 45, 247, 710, 1331
Tru1I TTAA 3 cut(s) 594, 633, 1127
Tru9I TTAA 3 cut(s) 594, 633, 1127
TscAI CASTG 4 cut(s) 394, 415, 645, 864
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 5 cut(s) 643, 750, 950, 1019, 1295
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 5 cut(s) 10, 104, 855, 861, 1340
TspRI CASTG 4 cut(s) 394, 415, 645, 864
Van91I CCANNNNNTGG 1 cut(s) 422
VpaK11BI GGWCC 2 cut(s) 413, 1120
XapI RAATTY 1 cut(s) 220
XceI RCATGY 2 cut(s) 673, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.