MD03G1070900.v1.1

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
5786105 .. 5790084
3980 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1070900.v1.1.491

Sequence Viewer

Length: 1356 bp
ATGGAAGAATCCCAGGAGGCTTTGAACAACATAGAGAATGGGATTAGTAATTATAACAAGGGTTTAGGAAATAATAAGGAGATTAACGGATCAAAGACGCCACAAAACTTGTCAGCTTCGATTGTACGAAAAAAATCCGACCCGATTCTTGTTTCGAATGTTCGATTCCAAATGCTTAGAAATATGCTCAACAATTTGCATGAGGTTGTTCTTGGCACCAAGCTTGCAGTGCTCTTCCCAGCCATCCCCCTTGCAATTCTGGCTGACTTCTATCACTTTGGGAGACCTTGGATTTTTGCTTTGAGTTTGCTCGGACTCACCCCACTTGCTGAACGTGTCAGCTTCCTCACTGAGCAAATTGCTTACTTCACTGGTCCAACAGTTGGAGGACTTCTCAATGCAACATGTGGAAATGCAACAGAGATGATCATAGCATTCTTTGCTCTTCGCCAAAACAAAATACATGTTGTGAAATACTCCCTTTTGGGTTCCATTCTCTCAAACCTCCTCCTTGTTCTTGGGACCTCTCTTCTCTTTGGAGGCTTGGCCAACCTGAAAAAAGAACAAAGATATGACAGAAAGCAGGCTGATGTGAATTCACTACTTTTATTGCTGGGTTTACTATGCCACATGCTGCCACTGATGTTCCGATATGCCTCAGGGTTGGGCAACCCCTTTGCCATCGACACTCTTCAGTTGTCAAGAACAAGCAGCATTTTTATGCTCATAGCATATGTTGCCTATATCTTCTTCCAGTTAAAAACCCACCGGCAATTGTTTGAGTCACAAGAGGAAGATGAAGATGAAGACGGAGAAAAAGCCGTGATAGGGTTTTGGAGTGCATTCAGTTGGCTGGTTGGTATGACAATTATCATAGCTCTCTTGTCTGAGTATGTTGTGGGTACAATCGAGGCTGCATCAAATTCTTGGGGAATTTCTGTGAACTTCATCAGCATTATTTTGCTACCAATTGTTGGGAATGCTGCTGAACATGCTGGTTCCATAATTTTTGCTCTCAAGAACAAGTTGGATATATCTTTGGGAGTTGCTTTAGGTTCTGCATCCCAAATTTCTATGTTTGTGGTCCCTTTAAGTGTGATTGTTGCATGGATAATGGGCATCCAAATGGACCTTGATTTCAGTCTCCTTGAAACTGGTTCTCTTGCTTTCACTATAATCATCACAGCCTTCACATTGCAGGATGGAACTTCACATTATATGAAAGGAGTCATTCTTTTCCTATGCTACGTTGTTATTGCCGCATGCTTTTTTGTTGACAAAATTCCCATGAATGAGACAATTGTGGGCAATTTGGGAACAGTGCATGAACCATCCTCTGGAATCTTGTTTGCTTGA

Protein Analysis

452

Amino Acids

49.38

Weight (kDa)

5.65

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 97 - 253 3.3e-22 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 282 - 424 6.2e-20 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 215
AccB7I CCANNNNNTGG 3 cut(s) 383, 974, 1337
AciI CCGC 1 cut(s) 1260
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 5 cut(s) 595, 922, 933, 1068, 1281
AcuI CTGAAG 1 cut(s) 677
AcyI GRCGYC 1 cut(s) 98
AfaI GTAC 2 cut(s) 126, 904
AfiI CCNNNNNNNGG 4 cut(s) 383, 828, 974, 1337
AflIII ACRYGT 3 cut(s) 334, 404, 463
AgsI TTSAA 2 cut(s) 25, 1151
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 4 cut(s) 116, 223, 342, 878
AluI AGCT 4 cut(s) 116, 223, 342, 878
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 3 cut(s) 277, 1148, 1289
AlwI GGATC 1 cut(s) 97
AoxI GGCC 1 cut(s) 546
ApeKI GCWGC 4 cut(s) 634, 711, 914, 983
ApoI RAATTY 5 cut(s) 595, 922, 933, 1068, 1281
AspS9I GGNCC 4 cut(s) 374, 522, 1084, 1129
AsuHPI GGTGA 1 cut(s) 310
AsuII TTCGAA 1 cut(s) 155
AvaII GGWCC 4 cut(s) 374, 522, 1084, 1129
AxyI CCTNAGG 1 cut(s) 658
BalI TGGCCA 1 cut(s) 548
BanI GGYRCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 813
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 4 cut(s) 621, 723, 901, 970
BccI CCATC 4 cut(s) 251, 689, 1196, 1339
BceAI ACGGC 1 cut(s) 806
BciT130I CCWGG 1 cut(s) 14
BclI TGATCA 1 cut(s) 426
BcoDI GTCTC 3 cut(s) 277, 1148, 1289
BisI GCNGC 5 cut(s) 635, 712, 915, 984, 1260
BlsI GCNGC 5 cut(s) 636, 713, 916, 985, 1261
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 4 cut(s) 374, 522, 1084, 1129
BmgT120I GGNCC 4 cut(s) 374, 522, 1084, 1129
BmiI GGNNCC 5 cut(s) 217, 490, 523, 1000, 1086
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 3 cut(s) 926, 1070, 1128
BpiI GAAGAC 1 cut(s) 813
BplI GAGNNNNNCTC 2 cut(s) 378, 410
Bpu14I TTCGAA 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 1001
BsaHI GRCGYC 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 12, 287
Bsc4I CCNNNNNNNGG 4 cut(s) 383, 828, 974, 1337
Bse118I RCCGGY 1 cut(s) 768
Bse1I ACTGG 3 cut(s) 376, 754, 1159
Bse21I CCTNAGG 1 cut(s) 658
Bse3DI GCAATG 1 cut(s) 1193
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 12, 287
BseGI GGATG 5 cut(s) 243, 1061, 1119, 1207, 1331
BseLI CCNNNNNNNGG 4 cut(s) 383, 828, 974, 1337
BseMI GCAATG 1 cut(s) 1193
BseMII CTCAG 3 cut(s) 342, 672, 879
BseNI ACTGG 3 cut(s) 376, 754, 1159
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 4 cut(s) 621, 723, 901, 970
BseYI CCCAGC 2 cut(s) 238, 613
BshFI GGCC 1 cut(s) 548
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 769
BslFI GGGAC 2 cut(s) 535, 1070
BslI CCNNNNNNNGG 4 cut(s) 383, 828, 974, 1337
BsmAI GTCTC 3 cut(s) 277, 1148, 1289
BsmFI GGGAC 2 cut(s) 535, 1070
BsmI GAATGC 3 cut(s) 434, 842, 985
BsnI GGCC 1 cut(s) 548
Bso31I GGTCTC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 89, 426
BspACI CCGC 1 cut(s) 1260
BspANI GGCC 1 cut(s) 548
BspCNI CTCAG 3 cut(s) 343, 671, 880
BspLI GGNNCC 5 cut(s) 217, 490, 523, 1000, 1086
BspPI GGATC 1 cut(s) 97
BspQI GCTCTTC 2 cut(s) 239, 450
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 1193
BsrFI RCCGGY 1 cut(s) 768
BsrI ACTGG 3 cut(s) 376, 754, 1159
BssAI RCCGGY 1 cut(s) 768
BssECI CCNNGG 2 cut(s) 12, 287
BssMI GATC 2 cut(s) 89, 426
BssNI GRCGYC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 2 cut(s) 382, 1321
Bst6I CTCTTC 4 cut(s) 239, 450, 534, 696
BstACI GRCGYC 1 cut(s) 98
BstAPI GCANNNNNTGC 2 cut(s) 440, 737
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 225, 585, 1264
BstDEI CTNAG 4 cut(s) 176, 351, 658, 888
BstF5I GGATG 5 cut(s) 243, 1061, 1119, 1207, 1331
BstKTI GATC 2 cut(s) 92, 429
BstMAI GTCTC 3 cut(s) 277, 1148, 1289
BstMBI GATC 2 cut(s) 89, 426
BstMWI GCNNNNNNNGC 5 cut(s) 229, 260, 440, 737, 992
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 5 cut(s) 408, 467, 634, 995, 1266
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 4 cut(s) 621, 723, 901, 970
BstV2I GAAGAC 1 cut(s) 813
Bsu36I CCTNAGG 1 cut(s) 658
BsuRI GGCC 1 cut(s) 548
BtsCI GGATG 5 cut(s) 243, 1061, 1119, 1207, 1331
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 5 cut(s) 234, 348, 369, 638, 1326
Cac8I GCNNGC 3 cut(s) 225, 585, 1264
Cfr10I RCCGGY 1 cut(s) 768
Cfr13I GGNCC 4 cut(s) 374, 522, 1084, 1129
CseI GACGC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 125, 903
CspCI CAANNNNNGTGG 2 cut(s) 90, 125
CviAII CATG 9 cut(s) 200, 405, 464, 631, 992, 1107, 1263, 1288, 1325
CviQI GTAC 2 cut(s) 125, 903
DdeI CTNAG 4 cut(s) 176, 351, 658, 888
DpnI GATC 2 cut(s) 91, 428
DpnII GATC 2 cut(s) 89, 426
EaeI YGGCCR 1 cut(s) 546
Eam1104I CTCTTC 4 cut(s) 239, 450, 534, 696
EarI CTCTTC 4 cut(s) 239, 450, 534, 696
Eco130I CCWWGG 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 277
Eco47I GGWCC 4 cut(s) 374, 522, 1084, 1129
Eco57I CTGAAG 1 cut(s) 677
Eco81I CCTNAGG 1 cut(s) 658
EcoO109I RGGNCCY 1 cut(s) 522
EcoRI GAATTC 1 cut(s) 595
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 9 cut(s) 203, 408, 467, 634, 995, 1110, 1266, 1291, 1328
FaqI GGGAC 2 cut(s) 535, 1070
FatI CATG 9 cut(s) 199, 404, 463, 630, 991, 1106, 1262, 1287, 1324
FauNDI CATATG 1 cut(s) 733
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 5 cut(s) 635, 712, 915, 984, 1260
FokI GGATG 5 cut(s) 230, 1048, 1106, 1214, 1318
Fsp4HI GCNGC 5 cut(s) 635, 712, 915, 984, 1260
GluI GCNGC 5 cut(s) 635, 712, 915, 984, 1260
GsaI CCCAGC 2 cut(s) 242, 617
HaeIII GGCC 1 cut(s) 548
HapII CCGG 1 cut(s) 769
HgaI GACGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 9 cut(s) 203, 408, 467, 634, 995, 1110, 1266, 1291, 1328
HincII GTYRAC 1 cut(s) 1276
HindII GTYRAC 1 cut(s) 1276
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 7 cut(s) 8, 145, 165, 315, 782, 1227, 1341
HpaII CCGG 1 cut(s) 769
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 3 cut(s) 620, 943, 1276
Hpy188I TCNGA 4 cut(s) 139, 314, 650, 889
Hpy188III TCNNGA 3 cut(s) 702, 1018, 1338
Hpy8I GTNNAC 3 cut(s) 620, 943, 1276
HpyAV CCTTC 1 cut(s) 1198
HpyCH4III ACNGT 2 cut(s) 382, 1321
HpyCH4IV ACGT 2 cut(s) 334, 1248
HpyF10VI GCNNNNNNNGC 5 cut(s) 229, 260, 440, 737, 992
HpyF3I CTNAG 4 cut(s) 176, 351, 658, 888
HpySE526I ACGT 2 cut(s) 334, 1248
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 9 cut(s) 203, 408, 467, 634, 995, 1110, 1266, 1291, 1328
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 2 cut(s) 89, 426
LguI GCTCTTC 2 cut(s) 239, 450
Lsp1109I GCAGC 4 cut(s) 621, 723, 901, 970
LweI GCATC 3 cut(s) 926, 1070, 1128
MaeII ACGT 2 cut(s) 334, 1248
MaeIII GTNAC 1 cut(s) 783
MalI GATC 2 cut(s) 91, 428
MboI GATC 2 cut(s) 89, 426
MfeI CAATTG 3 cut(s) 773, 969, 1299
MhlI GDGCHC 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 548
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 3 cut(s) 309, 791, 1236
MmeI TCCRAC 4 cut(s) 162, 364, 401, 1008
Mox20I TGGCCA 1 cut(s) 548
MscI TGGCCA 1 cut(s) 548
MseI TTAA 3 cut(s) 84, 758, 1091
MslI CAYNNNNRTG 2 cut(s) 719, 1124
Msp20I TGGCCA 1 cut(s) 548
MspI CCGG 1 cut(s) 769
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 3 cut(s) 773, 969, 1299
Mva1269I GAATGC 3 cut(s) 434, 842, 985
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 5 cut(s) 229, 260, 440, 737, 992
NdeI CATATG 1 cut(s) 733
NdeII GATC 2 cut(s) 89, 426
NlaIII CATG 9 cut(s) 203, 408, 467, 634, 995, 1110, 1266, 1291, 1328
NlaIV GGNNCC 5 cut(s) 217, 490, 523, 1000, 1086
NmuCI GTSAC 1 cut(s) 783
NspI RCATGY 5 cut(s) 408, 467, 634, 995, 1266
NspV TTCGAA 1 cut(s) 155
PaeI GCATGC 1 cut(s) 1266
PciI ACATGT 2 cut(s) 404, 463
PciSI GCTCTTC 2 cut(s) 239, 450
PctI GAATGC 3 cut(s) 434, 842, 985
PfeI GAWTC 4 cut(s) 8, 145, 165, 1341
PflMI CCANNNNNTGG 3 cut(s) 383, 974, 1337
PkrI GCNGC 5 cut(s) 636, 713, 916, 985, 1261
PleI GAGTC 3 cut(s) 309, 790, 1235
PpsI GAGTC 3 cut(s) 309, 790, 1235
PpuMI RGGWCCY 1 cut(s) 522
PscI ACATGT 2 cut(s) 404, 463
PsiI TTATAA 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 12
PspFI CCCAGC 2 cut(s) 238, 613
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 5 cut(s) 217, 490, 523, 1000, 1086
PspPI GGNCC 4 cut(s) 374, 522, 1084, 1129
PspPPI RGGWCCY 1 cut(s) 522
RsaI GTAC 2 cut(s) 126, 904
RsaNI GTAC 2 cut(s) 125, 903
RseI CAYNNNNRTG 2 cut(s) 719, 1124
SapI GCTCTTC 2 cut(s) 239, 450
SaqAI TTAA 3 cut(s) 84, 758, 1091
SatI GCNGC 5 cut(s) 635, 712, 915, 984, 1260
Sau3AI GATC 2 cut(s) 89, 426
Sau96I GGNCC 4 cut(s) 374, 522, 1084, 1129
SchI GAGTC 3 cut(s) 309, 791, 1236
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 3 cut(s) 926, 1070, 1128
SfuI TTCGAA 1 cut(s) 155
SinI GGWCC 4 cut(s) 374, 522, 1084, 1129
SmiMI CAYNNNNRTG 2 cut(s) 719, 1124
SmlI CTYRAG 1 cut(s) 1016
SmoI CTYRAG 1 cut(s) 1016
SphI GCATGC 1 cut(s) 1266
SsiI CCGC 1 cut(s) 1260
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 2 cut(s) 382, 1321
TaiI ACGT 2 cut(s) 337, 1251
TaqI TCGA 5 cut(s) 119, 155, 163, 684, 909
TauI GCSGC 1 cut(s) 1262
TfiI GAWTC 4 cut(s) 8, 145, 165, 1341
Tru1I TTAA 3 cut(s) 84, 758, 1091
Tru9I TTAA 3 cut(s) 84, 758, 1091
TscAI CASTG 5 cut(s) 234, 355, 376, 645, 1326
TseFI GTSAC 1 cut(s) 783
TseI GCWGC 4 cut(s) 634, 711, 914, 983
Tsp45I GTSAC 1 cut(s) 783
TspDTI ATGAA 6 cut(s) 813, 819, 937, 1235, 1304, 1341
TspGWI ACGGA 2 cut(s) 102, 825
TspRI CASTG 5 cut(s) 234, 355, 376, 645, 1326
Van91I CCANNNNNTGG 3 cut(s) 383, 974, 1337
VpaK11BI GGWCC 4 cut(s) 374, 522, 1084, 1129
XapI RAATTY 5 cut(s) 595, 922, 933, 1068, 1281
XceI RCATGY 5 cut(s) 408, 467, 634, 995, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.