Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002917

Physical Location & Seq

Genomic Coordinates Reverse (-)

76323606 .. 76327662

Gene Structure 4057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG485600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGATCACAAGAGGATTTCATCATCAACAACATTGAGAATGCAATCGACGACGATCACAAGGGTTTAGTAAACGGCACGAATAATATAAATGGTGAGAATAAGGAGCAATGGAGTGTTGGGAAGACGCCTCAAAACCTGTCATCCTCCATGGTACGCAAAAAGTCCGACCCGATTCTTGTTTCTAATGTACGCTTCCAAATGCTCAGAAATTTTCTAAACAATTTGCAAGAGGTGATCCTTGGCACCAAGCTCGCCGTACTTTTTCCGGCCATTCCACTCGCGATTGCTGCTGATTTTTACCACTTCGGAAGACCTTGGGTTTTTGCTTTGAGTTTGTTGGGACTCACTCCACTGGCCGAACGTGTCAGCTTCCTCACCGAACAAATCGCATACTTCACCGGTCCAACAGTTGGGGGACTTCTTAATGCAACGTGTGGAAATGCAACAGAGATGATAATAGCACTATTTGCTCTTCATGAGAACAAAATAGATGTTGTCAAGTACTCCTTATTGGGTTCCATTCTCTCAAACCTCCTCCTTGTTCTTGGCACCTCTCTACTTTGTGGAGGCCTGGCCAACATCAAAAAAGAACAAAGATATGATAGAAAACAGGCTGATGTGAATTCACTACTGTTACTGCTGGGGTTACTATGTCACATGTTGCCACTTTTGTTCAGATATGCCTCAGGAGTTAGCAATTCCTATGCCACCTCCACTCTTGAATTGTCAAGAGCAAGCAGCATTTTTATGCTTATTGCATATGTTGCTTATATCTTCTTCCAGTTGAAAACACACCGCCAAGTGTTTGAATCACAAGAGGAAGATGATGAAGAAGAAGAGAAAGCAGTGATTGGATGTTGGAGTGCATTCGGTTGGCTGGCTGGTATGACAGTTATCATAGCGCTCTTGTCTGAGTATGTCGTGGGTACAATTGAGGCTGCATCAAACTCTTGGGGCATTTCTGTGACCTTTATCAGCATTATTTTGCTACCAATTGTGGGAAATGCAGCAGAACATGCTGGATCAATCATATTTGCTCTCAAGAACAAGTTGGACATATCTTTGGGTGTTTCTTTAGGTTCTGCGTCTCAAATCTCCATGTTTGTGGTAAGAACCAATTGTCAAGTAAAACGAGCCACATTGAGTAATCTAAAATTCTTCAAATTAGTCATACAAAAACCTAACTACCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006793 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006882 GO:0008150 GO:0008152 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0051592 GO:0051704 GO:0051707 GO:0055062 GO:0055065 GO:0055069 GO:0055071 GO:0055074 GO:0055076 GO:0055080 GO:0055081 GO:0055082 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0072503 GO:0072505 GO:0072506 GO:0072507 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

398

Amino Acids

43.72

Weight (kDa)

6.33

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	107 - 263	1e-21	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	290 - 371	2.1e-11	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38170 AT2G38170 AT2G38170 AT3G51860 AT3G51860
fragaria_vesca	FvH4_3g38530 FvH4_6g11493
malus_domestica	MD03G1070900.v1.1 MD04G1151600.v1.1 MD11G1074900.v1.1 MD12G1165800.v1.1
prunus_persica	Prupe.6G057700_v2.0.a1 Prupe.6G276800_v2.0.a1 Prupe.6G276800_v2.0.a1
pyrus_communis	pycom03g05720 pycom04g13770
rosa_chinensis	RchiOBHm_Chr3g0463191 RchiOBHm_Chr5g0069431
rosa_laevigata	RLG00000024804 RLG00000036052
rosa_multiflora	Rmu_sc0002658.1_g000024 Rmu_sc0022743.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011530 Rroxscaffold_6G00416820
rosa_rugosa	Rorug03G0062200.1 Rorug03G0062300 Rorug03G0062300 Rorug05G0397500
rosa_samantha	Rh3AG120400 Rh3BG124800 Rh3CG126900 Rh3DG125800 Rh5AG454800 Rh5BG473600 Rh5CG496100 Rh5DG485600
rosa_wichuraiana	Rw3G010220 Rw5G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	245, 551
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccII	CGCG	1 cut(s)	284
AciI	CCGC	1 cut(s)	799
AclWI	GGATC	3 cut(s)	13, 232, 1033
AcoI	YGGCCR	3 cut(s)	270, 357, 576
AcsI	RAATTY	3 cut(s)	211, 625, 1157
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	5 cut(s)	156, 192, 261, 506, 931
AfeI	AGCGCT	1 cut(s)	906
AfiI	CCNNNNNNNGG	2 cut(s)	413, 1001
AflIII	ACRYGT	3 cut(s)	364, 434, 660
AgeI	ACCGGT	1 cut(s)	401
AgsI	TTSAA	4 cut(s)	725, 790, 812, 1165
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	2 cut(s)	253, 372
AluI	AGCT	2 cut(s)	253, 372
Alw26I	GTCTC	1 cut(s)	1095
AlwI	GGATC	3 cut(s)	13, 232, 1033
Aor51HI	AGCGCT	1 cut(s)	906
AoxI	GGCC	4 cut(s)	270, 357, 571, 576
ApeKI	GCWGC	4 cut(s)	290, 741, 941, 1010
ApoI	RAATTY	3 cut(s)	211, 625, 1157
AsiGI	ACCGGT	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	907
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	4 cut(s)	107, 247, 370, 391
AvaII	GGWCC	1 cut(s)	404
AxyI	CCTNAGG	1 cut(s)	688
BalI	TGGCCA	1 cut(s)	578
BanI	GGYRCC	2 cut(s)	245, 551
BbsI	GAAGAC	2 cut(s)	131, 319
BbvI	GCAGC	4 cut(s)	277, 753, 928, 1022
BceAI	ACGGC	2 cut(s)	91, 242
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	1095
BfoI	RGCGCY	1 cut(s)	908
BisI	GCNGC	4 cut(s)	291, 742, 942, 1011
BlsI	GCNGC	4 cut(s)	292, 743, 943, 1012
BmcAI	AGTACT	1 cut(s)	506
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	3 cut(s)	247, 520, 553
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	1 cut(s)	953
BpiI	GAAGAC	2 cut(s)	131, 319
BpuEI	CTTGAG	1 cut(s)	1028
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	150, 241, 317
BsaWI	WCCGGW	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 1001
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	360, 784
Bse21I	CCTNAGG	1 cut(s)	688
Bse3DI	GCAATG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	3 cut(s)	150, 241, 317
BseGI	GGATG	2 cut(s)	143, 863
BseLI	CCNNNNNNNGG	2 cut(s)	413, 1001
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	3 cut(s)	220, 702, 906
BseNI	ACTGG	2 cut(s)	360, 784
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	4 cut(s)	277, 753, 928, 1022
BseYI	CCCAGC	1 cut(s)	643
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	4 cut(s)	272, 359, 573, 578
BshNI	GGYRCC	2 cut(s)	245, 551
BshTI	ACCGGT	1 cut(s)	401
BsiSI	CCGG	2 cut(s)	269, 402
BslFI	GGGAC	2 cut(s)	357, 432
BslI	CCNNNNNNNGG	2 cut(s)	413, 1001
BsmAI	GTCTC	1 cut(s)	1095
BsmBI	CGTCTC	1 cut(s)	1095
BsmFI	GGGAC	2 cut(s)	357, 432
BsmI	GAATGC	2 cut(s)	46, 869
BsnI	GGCC	4 cut(s)	272, 359, 573, 578
Bsp143I	GATC	4 cut(s)	5, 55, 237, 1025
Bsp19I	CCATGG	1 cut(s)	150
Bsp68I	TCGCGA	1 cut(s)	284
BspACI	CCGC	1 cut(s)	799
BspANI	GGCC	4 cut(s)	272, 359, 573, 578
BspCNI	CTCAG	3 cut(s)	219, 701, 907
BspFNI	CGCG	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	3 cut(s)	247, 520, 553
BspPI	GGATC	3 cut(s)	13, 232, 1033
BspQI	GCTCTTC	1 cut(s)	480
BspT107I	GGYRCC	2 cut(s)	245, 551
BsrDI	GCAATG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	360, 784
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	3 cut(s)	150, 241, 317
BssMI	GATC	4 cut(s)	5, 55, 237, 1025
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	3 cut(s)	150, 241, 317
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	3 cut(s)	412, 636, 895
Bst6I	CTCTTC	2 cut(s)	480, 834
BstACI	GRCGYC	1 cut(s)	128
BstAPI	GCANNNNNTGC	3 cut(s)	470, 767, 1019
BstC8I	GCNNGC	3 cut(s)	255, 739, 882
BstDEI	CTNAG	3 cut(s)	206, 688, 915
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	143, 863
BstFNI	CGCG	1 cut(s)	284
BstH2I	RGCGCY	1 cut(s)	908
BstHHI	GCGC	1 cut(s)	907
BstKTI	GATC	4 cut(s)	8, 58, 240, 1028
BstMAI	GTCTC	1 cut(s)	1095
BstMBI	GATC	4 cut(s)	5, 55, 237, 1025
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 470, 767, 1019
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	2 cut(s)	664, 1022
BstSCI	CCNGG	1 cut(s)	573
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	4 cut(s)	277, 753, 928, 1022
BstV2I	GAAGAC	2 cut(s)	131, 319
BstXI	CCANNNNNNTGG	1 cut(s)	1108
Bsu36I	CCTNAGG	1 cut(s)	688
BsuRI	GGCC	4 cut(s)	272, 359, 573, 578
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	143, 863
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	2 cut(s)	353, 855
BtuMI	TCGCGA	1 cut(s)	284
Cac8I	GCNNGC	3 cut(s)	255, 739, 882
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	907
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	404
CseI	GACGC	2 cut(s)	136, 1077
Csp6I	GTAC	5 cut(s)	155, 191, 260, 505, 930
CspAI	ACCGGT	1 cut(s)	401
CviAII	CATG	5 cut(s)	151, 479, 661, 1019, 1102
CviQI	GTAC	5 cut(s)	155, 191, 260, 505, 930
DdeI	CTNAG	3 cut(s)	206, 688, 915
DpnI	GATC	4 cut(s)	7, 57, 239, 1027
DpnII	GATC	4 cut(s)	5, 55, 237, 1025
EaeI	YGGCCR	3 cut(s)	270, 357, 576
Eam1104I	CTCTTC	2 cut(s)	480, 834
EarI	CTCTTC	2 cut(s)	480, 834
Eco130I	CCWWGG	3 cut(s)	150, 241, 317
Eco147I	AGGCCT	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	404
Eco47III	AGCGCT	1 cut(s)	906
Eco81I	CCTNAGG	1 cut(s)	688
EcoRI	GAATTC	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	573
EcoT14I	CCWWGG	3 cut(s)	150, 241, 317
ErhI	CCWWGG	3 cut(s)	150, 241, 317
Esp3I	CGTCTC	1 cut(s)	1095
FaeI	CATG	5 cut(s)	154, 482, 664, 1022, 1105
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	2 cut(s)	357, 432
FatI	CATG	5 cut(s)	150, 478, 660, 1018, 1101
FauNDI	CATATG	1 cut(s)	763
Fnu4HI	GCNGC	4 cut(s)	291, 742, 942, 1011
FokI	GGATG	2 cut(s)	130, 870
Fsp4HI	GCNGC	4 cut(s)	291, 742, 942, 1011
GlaI	GCGC	1 cut(s)	906
GluI	GCNGC	4 cut(s)	291, 742, 942, 1011
GsaI	CCCAGC	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	908
HaeIII	GGCC	4 cut(s)	272, 359, 573, 578
HapII	CCGG	2 cut(s)	269, 402
HgaI	GACGC	2 cut(s)	136, 1077
HhaI	GCGC	1 cut(s)	907
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	5 cut(s)	154, 482, 664, 1022, 1105
Hin6I	GCGC	1 cut(s)	905
HinP1I	GCGC	1 cut(s)	905
HinfI	GANTC	3 cut(s)	175, 345, 812
HpaII	CCGG	2 cut(s)	269, 402
HphI	GGTGA	4 cut(s)	107, 247, 370, 391
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	5 cut(s)	169, 209, 311, 680, 916
Hpy188III	TCNNGA	6 cut(s)	283, 479, 690, 722, 732, 1045
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	2 cut(s)	53, 56
HpyCH4III	ACNGT	3 cut(s)	412, 636, 895
HpyCH4IV	ACGT	2 cut(s)	364, 434
HpyCH4V	TGCA	8 cut(s)	44, 229, 431, 446, 761, 869, 944, 1010
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 470, 767, 1019
HpyF3I	CTNAG	3 cut(s)	206, 688, 915
HpySE526I	ACGT	2 cut(s)	364, 434
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	5 cut(s)	154, 482, 664, 1022, 1105
HspAI	GCGC	1 cut(s)	905
Kzo9I	GATC	4 cut(s)	5, 55, 237, 1025
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	4 cut(s)	277, 753, 928, 1022
LweI	GCATC	1 cut(s)	953
MaeII	ACGT	2 cut(s)	364, 434
MaeIII	GTNAC	4 cut(s)	636, 648, 656, 967
MalI	GATC	4 cut(s)	7, 57, 239, 1027
MboI	GATC	4 cut(s)	5, 55, 237, 1025
MfeI	CAATTG	3 cut(s)	933, 996, 1120
MlsI	TGGCCA	1 cut(s)	578
MluNI	TGGCCA	1 cut(s)	578
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	4 cut(s)	192, 431, 842, 1035
Mox20I	TGGCCA	1 cut(s)	578
MscI	TGGCCA	1 cut(s)	578
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	3 cut(s)	749, 965, 1106
Msp20I	TGGCCA	1 cut(s)	578
MspI	CCGG	2 cut(s)	269, 402
MspR9I	CCNGG	1 cut(s)	575
MunI	CAATTG	3 cut(s)	933, 996, 1120
Mva1269I	GAATGC	2 cut(s)	46, 869
MvaI	CCWGG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	4 cut(s)	290, 470, 767, 1019
NcoI	CCATGG	1 cut(s)	150
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	4 cut(s)	5, 55, 237, 1025
NlaIII	CATG	5 cut(s)	154, 482, 664, 1022, 1105
NlaIV	GGNNCC	3 cut(s)	247, 520, 553
NmuCI	GTSAC	2 cut(s)	656, 967
NruI	TCGCGA	1 cut(s)	284
NspI	RCATGY	2 cut(s)	664, 1022
PagI	TCATGA	1 cut(s)	478
PceI	AGGCCT	1 cut(s)	573
PciI	ACATGT	1 cut(s)	660
PciSI	GCTCTTC	1 cut(s)	480
PctI	GAATGC	2 cut(s)	46, 869
PfeI	GAWTC	2 cut(s)	175, 812
PflMI	CCANNNNNTGG	1 cut(s)	413
PinAI	ACCGGT	1 cut(s)	401
PkrI	GCNGC	4 cut(s)	292, 743, 943, 1012
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PscI	ACATGT	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	573
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	3 cut(s)	247, 520, 553
PspPI	GGNCC	1 cut(s)	404
RruI	TCGCGA	1 cut(s)	284
RsaI	GTAC	5 cut(s)	156, 192, 261, 506, 931
RsaNI	GTAC	5 cut(s)	155, 191, 260, 505, 930
RseI	CAYNNNNRTG	3 cut(s)	749, 965, 1106
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	4 cut(s)	291, 742, 942, 1011
Sau3AI	GATC	4 cut(s)	5, 55, 237, 1025
Sau96I	GGNCC	1 cut(s)	404
ScaI	AGTACT	1 cut(s)	506
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	575
SfaNI	GCATC	1 cut(s)	953
SinI	GGWCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	3 cut(s)	749, 965, 1106
SmlI	CTYRAG	1 cut(s)	1043
SmoI	CTYRAG	1 cut(s)	1043
SseBI	AGGCCT	1 cut(s)	573
SsiI	CCGC	1 cut(s)	799
StuI	AGGCCT	1 cut(s)	573
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	3 cut(s)	150, 241, 317
TaaI	ACNGT	3 cut(s)	412, 636, 895
TaiI	ACGT	2 cut(s)	367, 437
TaqI	TCGA	1 cut(s)	48
TatI	WGTACW	1 cut(s)	504
TfiI	GAWTC	2 cut(s)	175, 812
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	2 cut(s)	360, 855
TseFI	GTSAC	2 cut(s)	656, 967
TseI	GCWGC	4 cut(s)	290, 741, 941, 1010
Tsp45I	GTSAC	2 cut(s)	656, 967
TspDTI	ATGAA	3 cut(s)	10, 467, 846
TspRI	CASTG	2 cut(s)	360, 855
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	3 cut(s)	211, 625, 1157
XceI	RCATGY	2 cut(s)	664, 1022
ZrmI	AGTACT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.