Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002917

Physical Location & Seq

Genomic Coordinates Forward (+)

4534383 .. 4538017

Gene Structure 3635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05720.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGAAGAATCCCAGGAGGCTTTGAACAACATAGAGAATGGGATTAGTAATTATAACAAGGGTTTAGGAAATAATAAGGAGATTAACGGATCAAAGACACCACAAAACTTGTCAGCTTCGATTGTACGAAAAAAATCCGACCCGATTCTAGTTTCGAATGTTCGATTCCAAATGCTCAGAAATATTCTCAACAATTTGCATGAGGTTGTTCTTGGCACCAAGCTTGCAGTGCTCTTCCCAGCCATCCCCCTTGCAATTCTGGCTGACTTCTATCACTTTGGGAGACCTTGGATTTTTGCTTTGAGTTTGCTCGGACTCACCCCACTTGCTGAACGTGTCAGCTTCCTCACTGAGCAAATTGCTTACTTCACTGGTCCAACAGTTGGAGGACTTCTCAATGCAACATGTGGAAATGCAACAGAGATGATCATAGCATTCTTTGCTCTTCGCCAAAACAAAATACATGTTGTGAAATACTCCCTTTTGGGTTCCATTCTCTCAAACCTACTCCTTGTTCTTGGGACCTCTCTTCTATTTGGAGGCTTGGCCAACCTGAAAAAAGAACAAAGATATGACAGAAAGCAGGCTGATGTGAATTCACTACTTTTATTGTTGGGTTTACTGTGCCACATGCTGCCACTGATGTTCAGATATGCCTCAGGGTTGGGCAATCCCTTTGCCATCGACACTCTTCAGTTGTCAAGAACAAGCAGCATTTCCCACCTTCAGATCGATCATAGCATATGTTGCCTATATCTTCTTCCAGTTAAAAACCCACCGGCAATTCAGGAAGATGAAGACGAAGACAAAGACGGAGAAAAAGCAGTGATAGGGTTTTGGAGTGCATTCAGTTGGCTGGTTGGTATGACAATTATCATAGCTCTCTTGTCTGAGTATGTTGTGGGTACAATCGAGGCTGCATCAAATTCTTGGGGAATTTCTGTGAACTTCATCAGCATTATTTTGCTACCAATTGTCGGGAATGCTGCTGAACATGCTGGTTCCATAATTTTTGCTCTCAAGAACAAGTTGGATATATCTTTGGGAGTTGCTTTAGGTTCTGCATCCCAAATTTCTATGTTTGTGGTCCCTTTAAGTGTGATTGTTGCATGGATAATGGGCATCCAAATGGACCTTGATTTCAGTCTCCTTGAAACTGGTTCTCTTGCTTTCACTATTATCATCACAGCCTTCACATTGCAGGATGGAACTTCACATTATATGAAAGGAGTCATTCTTTTCCTATGCTACGTTGTTATTGCTGCATGCTTTTTTGTTGACAAAATTCCCATGAATGAGACAATTGTGGGCAATTTGGGAACAGTGAATGAACCATCCTCTGGAATCTTGTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006793 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006882 GO:0008150 GO:0008152 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0051592 GO:0051704 GO:0051707 GO:0055062 GO:0055065 GO:0055069 GO:0055071 GO:0055074 GO:0055076 GO:0055080 GO:0055081 GO:0055082 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0072503 GO:0072505 GO:0072506 GO:0072507 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

453

Amino Acids

49.16

Weight (kDa)

5.65

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38170 AT2G38170 AT2G38170 AT3G51860 AT3G51860
fragaria_vesca	FvH4_3g38530 FvH4_6g11493
malus_domestica	MD03G1070900.v1.1 MD04G1151600.v1.1 MD11G1074900.v1.1 MD12G1165800.v1.1
prunus_persica	Prupe.6G057700_v2.0.a1 Prupe.6G276800_v2.0.a1 Prupe.6G276800_v2.0.a1
pyrus_communis	pycom03g05720 pycom04g13770
rosa_chinensis	RchiOBHm_Chr3g0463191 RchiOBHm_Chr5g0069431
rosa_laevigata	RLG00000024804 RLG00000036052
rosa_multiflora	Rmu_sc0002658.1_g000024 Rmu_sc0022743.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011530 Rroxscaffold_6G00416820
rosa_rugosa	Rorug03G0062200.1 Rorug03G0062300 Rorug03G0062300 Rorug05G0397500
rosa_samantha	Rh3AG120400 Rh3BG124800 Rh3CG126900 Rh3DG125800 Rh5AG454800 Rh5BG473600 Rh5CG496100 Rh5DG485600
rosa_wichuraiana	Rw3G010220 Rw5G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	2 cut(s)	383, 1340
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	5 cut(s)	595, 925, 936, 1071, 1284
AcuI	CTGAAG	2 cut(s)	677, 710
AfaI	GTAC	2 cut(s)	126, 907
AfiI	CCNNNNNNNGG	3 cut(s)	383, 977, 1340
AflIII	ACRYGT	3 cut(s)	334, 404, 463
AgsI	TTSAA	2 cut(s)	25, 1154
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	4 cut(s)	116, 223, 342, 881
AluI	AGCT	4 cut(s)	116, 223, 342, 881
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	3 cut(s)	277, 1151, 1292
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	5 cut(s)	634, 711, 917, 986, 1262
ApoI	RAATTY	5 cut(s)	595, 925, 936, 1071, 1284
AspS9I	GGNCC	4 cut(s)	374, 522, 1087, 1132
AsuHPI	GGTGA	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	155
AvaII	GGWCC	4 cut(s)	374, 522, 1087, 1132
AxyI	CCTNAGG	1 cut(s)	658
BalI	TGGCCA	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	804, 810
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	5 cut(s)	621, 723, 904, 973, 1249
BccI	CCATC	4 cut(s)	251, 689, 1199, 1342
BciT130I	CCWGG	1 cut(s)	14
BclI	TGATCA	1 cut(s)	426
BcoDI	GTCTC	3 cut(s)	277, 1151, 1292
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	5 cut(s)	635, 712, 918, 987, 1263
BlsI	GCNGC	5 cut(s)	636, 713, 919, 988, 1264
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	4 cut(s)	374, 522, 1087, 1132
BmgT120I	GGNCC	4 cut(s)	374, 522, 1087, 1132
BmiI	GGNNCC	5 cut(s)	217, 490, 523, 1003, 1089
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	3 cut(s)	929, 1073, 1131
BpiI	GAAGAC	2 cut(s)	804, 810
BplI	GAGNNNNNCTC	2 cut(s)	378, 410
Bpu14I	TTCGAA	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	1004
Bsa29I	ATCGAT	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	12, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	383, 977, 1340
Bse118I	RCCGGY	1 cut(s)	778
Bse1I	ACTGG	3 cut(s)	376, 764, 1162
Bse21I	CCTNAGG	1 cut(s)	658
Bse3DI	GCAATG	1 cut(s)	1196
BseBI	CCWGG	1 cut(s)	14
BseCI	ATCGAT	1 cut(s)	732
BseDI	CCNNGG	2 cut(s)	12, 287
BseGI	GGATG	5 cut(s)	243, 1064, 1122, 1210, 1334
BseLI	CCNNNNNNNGG	3 cut(s)	383, 977, 1340
BseMI	GCAATG	1 cut(s)	1196
BseMII	CTCAG	4 cut(s)	190, 342, 672, 882
BseNI	ACTGG	3 cut(s)	376, 764, 1162
BseXI	GCAGC	5 cut(s)	621, 723, 904, 973, 1249
BseYI	CCCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	548
BshNI	GGYRCC	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	779
BslFI	GGGAC	2 cut(s)	535, 1073
BslI	CCNNNNNNNGG	3 cut(s)	383, 977, 1340
BsmAI	GTCTC	3 cut(s)	277, 1151, 1292
BsmFI	GGGAC	2 cut(s)	535, 1073
BsmI	GAATGC	3 cut(s)	434, 845, 988
BsnI	GGCC	1 cut(s)	548
Bso31I	GGTCTC	1 cut(s)	277
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	89, 426, 729, 733
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	4 cut(s)	189, 343, 671, 883
BspDI	ATCGAT	1 cut(s)	732
BspLI	GGNNCC	5 cut(s)	217, 490, 523, 1003, 1089
BspPI	GGATC	1 cut(s)	97
BspQI	GCTCTTC	2 cut(s)	239, 450
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	1196
BsrFI	RCCGGY	1 cut(s)	778
BsrI	ACTGG	3 cut(s)	376, 764, 1162
BssAI	RCCGGY	1 cut(s)	778
BssECI	CCNNGG	2 cut(s)	12, 287
BssMI	GATC	4 cut(s)	89, 426, 729, 733
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	3 cut(s)	382, 624, 1324
Bst6I	CTCTTC	4 cut(s)	239, 450, 534, 696
BstAPI	GCANNNNNTGC	2 cut(s)	440, 747
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	225, 585, 1267
BstDEI	CTNAG	4 cut(s)	176, 351, 658, 891
BstF5I	GGATG	5 cut(s)	243, 1064, 1122, 1210, 1334
BstKTI	GATC	4 cut(s)	92, 429, 732, 736
BstMAI	GTCTC	3 cut(s)	277, 1151, 1292
BstMBI	GATC	4 cut(s)	89, 426, 729, 733
BstMWI	GCNNNNNNNGC	5 cut(s)	229, 260, 440, 747, 995
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	5 cut(s)	408, 467, 634, 998, 1269
BstSCI	CCNGG	1 cut(s)	12
BstV1I	GCAGC	5 cut(s)	621, 723, 904, 973, 1249
BstV2I	GAAGAC	2 cut(s)	804, 810
Bsu15I	ATCGAT	1 cut(s)	732
Bsu36I	CCTNAGG	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	548
BsuTUI	ATCGAT	1 cut(s)	732
BtsCI	GGATG	5 cut(s)	243, 1064, 1122, 1210, 1334
BtsI	GCAGTG	2 cut(s)	234, 831
BtsIMutI	CAGTG	6 cut(s)	234, 348, 369, 638, 831, 1329
Cac8I	GCNNGC	3 cut(s)	225, 585, 1267
Cfr10I	RCCGGY	1 cut(s)	778
Cfr13I	GGNCC	4 cut(s)	374, 522, 1087, 1132
ClaI	ATCGAT	1 cut(s)	732
Csp6I	GTAC	2 cut(s)	125, 906
CspCI	CAANNNNNGTGG	2 cut(s)	90, 125
CviAII	CATG	8 cut(s)	200, 405, 464, 631, 995, 1110, 1266, 1291
CviQI	GTAC	2 cut(s)	125, 906
DdeI	CTNAG	4 cut(s)	176, 351, 658, 891
DpnI	GATC	4 cut(s)	91, 428, 731, 735
DpnII	GATC	4 cut(s)	89, 426, 729, 733
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	4 cut(s)	239, 450, 534, 696
EarI	CTCTTC	4 cut(s)	239, 450, 534, 696
Eco130I	CCWWGG	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	4 cut(s)	374, 522, 1087, 1132
Eco57I	CTGAAG	2 cut(s)	677, 710
Eco81I	CCTNAGG	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	8 cut(s)	203, 408, 467, 634, 998, 1113, 1269, 1294
FaqI	GGGAC	2 cut(s)	535, 1073
FatI	CATG	8 cut(s)	199, 404, 463, 630, 994, 1109, 1265, 1290
FauNDI	CATATG	1 cut(s)	743
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	5 cut(s)	635, 712, 918, 987, 1263
FokI	GGATG	5 cut(s)	230, 1051, 1109, 1217, 1321
Fsp4HI	GCNGC	5 cut(s)	635, 712, 918, 987, 1263
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	5 cut(s)	635, 712, 918, 987, 1263
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	1 cut(s)	779
Hin1II	CATG	8 cut(s)	203, 408, 467, 634, 998, 1113, 1269, 1294
HincII	GTYRAC	1 cut(s)	1279
HindII	GTYRAC	1 cut(s)	1279
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	6 cut(s)	8, 145, 165, 315, 1230, 1344
HpaII	CCGG	1 cut(s)	779
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	3 cut(s)	620, 946, 1279
Hpy188I	TCNGA	6 cut(s)	139, 179, 314, 650, 729, 892
Hpy188III	TCNNGA	5 cut(s)	702, 788, 979, 1021, 1341
Hpy8I	GTNNAC	3 cut(s)	620, 946, 1279
HpyAV	CCTTC	2 cut(s)	734, 1201
HpyCH4III	ACNGT	3 cut(s)	382, 624, 1324
HpyCH4IV	ACGT	2 cut(s)	334, 1251
HpyF10VI	GCNNNNNNNGC	5 cut(s)	229, 260, 440, 747, 995
HpyF3I	CTNAG	4 cut(s)	176, 351, 658, 891
HpySE526I	ACGT	2 cut(s)	334, 1251
Hsp92II	CATG	8 cut(s)	203, 408, 467, 634, 998, 1113, 1269, 1294
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	89, 426, 729, 733
LguI	GCTCTTC	2 cut(s)	239, 450
Lsp1109I	GCAGC	5 cut(s)	621, 723, 904, 973, 1249
LweI	GCATC	3 cut(s)	929, 1073, 1131
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	2 cut(s)	334, 1251
MalI	GATC	4 cut(s)	91, 428, 731, 735
MboI	GATC	4 cut(s)	89, 426, 729, 733
MfeI	CAATTG	2 cut(s)	972, 1302
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	1 cut(s)	548
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	2 cut(s)	309, 1239
MmeI	TCCRAC	4 cut(s)	162, 364, 401, 1011
MnlI	CCTC	9 cut(s)	10, 196, 356, 380, 533, 535, 667, 907, 1348
Mox20I	TGGCCA	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	3 cut(s)	84, 768, 1094
MslI	CAYNNNNRTG	1 cut(s)	1127
Msp20I	TGGCCA	1 cut(s)	548
MspI	CCGG	1 cut(s)	779
MspR9I	CCNGG	1 cut(s)	14
MunI	CAATTG	2 cut(s)	972, 1302
Mva1269I	GAATGC	3 cut(s)	434, 845, 988
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	5 cut(s)	229, 260, 440, 747, 995
NdeI	CATATG	1 cut(s)	743
NdeII	GATC	4 cut(s)	89, 426, 729, 733
NlaIII	CATG	8 cut(s)	203, 408, 467, 634, 998, 1113, 1269, 1294
NlaIV	GGNNCC	5 cut(s)	217, 490, 523, 1003, 1089
NspI	RCATGY	5 cut(s)	408, 467, 634, 998, 1269
NspV	TTCGAA	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	1269
PciI	ACATGT	2 cut(s)	404, 463
PciSI	GCTCTTC	2 cut(s)	239, 450
PctI	GAATGC	3 cut(s)	434, 845, 988
PfeI	GAWTC	4 cut(s)	8, 145, 165, 1344
PflMI	CCANNNNNTGG	2 cut(s)	383, 1340
PkrI	GCNGC	5 cut(s)	636, 713, 919, 988, 1264
PleI	GAGTC	2 cut(s)	309, 1238
PpsI	GAGTC	2 cut(s)	309, 1238
PpuMI	RGGWCCY	1 cut(s)	522
PscI	ACATGT	2 cut(s)	404, 463
PsiI	TTATAA	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	5 cut(s)	217, 490, 523, 1003, 1089
PspPI	GGNCC	4 cut(s)	374, 522, 1087, 1132
PspPPI	RGGWCCY	1 cut(s)	522
RsaI	GTAC	2 cut(s)	126, 907
RsaNI	GTAC	2 cut(s)	125, 906
RseI	CAYNNNNRTG	1 cut(s)	1127
SapI	GCTCTTC	2 cut(s)	239, 450
SaqAI	TTAA	3 cut(s)	84, 768, 1094
SatI	GCNGC	5 cut(s)	635, 712, 918, 987, 1263
Sau3AI	GATC	4 cut(s)	89, 426, 729, 733
Sau96I	GGNCC	4 cut(s)	374, 522, 1087, 1132
SchI	GAGTC	2 cut(s)	309, 1239
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	3 cut(s)	929, 1073, 1131
SfuI	TTCGAA	1 cut(s)	155
SinI	GGWCC	4 cut(s)	374, 522, 1087, 1132
SmiMI	CAYNNNNRTG	1 cut(s)	1127
SmlI	CTYRAG	1 cut(s)	1019
SmoI	CTYRAG	1 cut(s)	1019
SphI	GCATGC	1 cut(s)	1269
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	3 cut(s)	382, 624, 1324
TaiI	ACGT	2 cut(s)	337, 1254
TaqI	TCGA	6 cut(s)	119, 155, 163, 684, 732, 912
TfiI	GAWTC	4 cut(s)	8, 145, 165, 1344
Tru1I	TTAA	3 cut(s)	84, 768, 1094
Tru9I	TTAA	3 cut(s)	84, 768, 1094
TscAI	CASTG	6 cut(s)	234, 355, 376, 645, 831, 1329
TseI	GCWGC	5 cut(s)	634, 711, 917, 986, 1262
TspDTI	ATGAA	5 cut(s)	810, 940, 1238, 1307, 1344
TspGWI	ACGGA	2 cut(s)	102, 828
TspRI	CASTG	6 cut(s)	234, 355, 376, 645, 831, 1329
Van91I	CCANNNNNTGG	2 cut(s)	383, 1340
VpaK11BI	GGWCC	4 cut(s)	374, 522, 1087, 1132
XapI	RAATTY	5 cut(s)	595, 925, 936, 1071, 1284
XceI	RCATGY	5 cut(s)	408, 467, 634, 998, 1269
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.