RLG00000036052

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
75333376 .. 75336872
3497 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036052

Sequence Viewer

Length: 1410 bp
ATGGGATCACAAGATGATTTCATCATCAACAACATTGAGAATGGAATCGACGACGATCACAAGGGTTTAGTAAACGGCACTAATAATATGAATGGTGAGAATAAGGAGCAATGGAGTTCTGGGAAGGCGCCTCAAAACCTGTCATCCTCCATGGTACGCAAAAAGTCCGACCCGATTCTTGTTTCTAATGTACGCTTCCAAATGCTCAGAAATTTTCTAAACAATTTGCAAGAGGTGATCCTTGGCACCAAGCTCGCCGTGCTTTTTCCGGCCATTCCACTCGCGATTGCGGCTGATTTTTACCACTTCGGAAGACCTTGGGTTTTTGCTTTGAGTTTGTTGGGACTCACTCCACTGGCTGAACGTGTCAGCTTCCTCACCGAACAAATCGCATACTTCACCGGTCCAACAGTTGGGGGACTTCTTAATGCAACGTGTGGAAATGCAACAGAGATGATAATAGCACTATTTGCTCTCCATGAGAACAAAATAGATGTTGTCAAGTACTCCTTATTGGGTTCCATTCTCTCAAACCTCCTCCTTGTTCTTGGTACCTCTCTACTTTGTGGAGGCCTGGCCAACATCAAAAAAGAACAAAGATATGATAGAAAACAGGCTGATGTGAATTCACTACTGTTACTGCTGGGGTTACTATGTCACATGTTGCCACTTTTGTTCAAATATGCCTCAGGAGTTAGCAATTCCTATGCCACCTCCACTCTTGAGTTGTCAAGAGCAAGCAGCATTTTTATGCTTATTGCATATGTTGCTTATATCTTCTTCCAGTTGAAAACACACCGCCAAGTGTTTGAATCACAAGAGTGCAATGAACAGGAAGATGAAGAAGAAGAAGAAGAGAAAGCAGTGATTGGATGTTGGAGTGCATTCGGTTGGCTGGCTGGTATGACAGTTATCATAGCGCTCCTGTCTGAGTATGTCGTGGGTACAATTGAGGCTGCATCAAACTCTTGGGGCATTTCTGTGACCTTTATCAGCATTATTTTGCTACCGATTGTGGGAAATGCAGCAGAACATGCTGGATCAATCATATTTGCTCTCAAGAACAAGTTGGACATATCTTTGGGTGTTTCTTTAGGTTCTGCATCTCAGATCTCCATGTTTGTGGTTCCTTTAAGTGTGATTGTTGCTTGGATAATGGGGGTTGAAATGGATCTTGACTTTAGCCTCCTTGAGACTGGTTCACTTGCTTTCACAATAATCATCACAGCCTTTACATTGCAGGATGGAACTTCACATTATATGAAAGGAGTCATTCTTTTCCTCTGCTACATTATTATTGCTGCTTGCTTTTTTGTTGACAAAACTCCCATGAATGATTCAAATGGTAGCAATTTGGGTAATGTACTTGAGCTATCTTCCAACTATTATGCCGGAGTCTTTTTTGCTTGA

Protein Analysis

470

Amino Acids

51.21

Weight (kDa)

4.87

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 107 - 263 1.8e-21 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 295 - 438 1e-19 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 3 cut(s) 127, 245, 551
AccB7I CCANNNNNTGG 1 cut(s) 413
AccII CGCG 1 cut(s) 284
AciI CCGC 2 cut(s) 290, 799
AclWI GGATC 4 cut(s) 13, 232, 1048, 1179
AcoI YGGCCR 2 cut(s) 270, 576
AcsI RAATTY 2 cut(s) 211, 625
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 6 cut(s) 156, 192, 506, 553, 946, 1365
AfeI AGCGCT 1 cut(s) 921
AfiI CCNNNNNNNGG 2 cut(s) 413, 1016
AflIII ACRYGT 3 cut(s) 364, 434, 660
AgeI ACCGGT 1 cut(s) 401
AgsI TTSAA 5 cut(s) 679, 790, 812, 1166, 1341
AjnI CCWGG 1 cut(s) 573
AleI CACNNNNGTG 1 cut(s) 820
AluBI AGCT 3 cut(s) 253, 372, 1372
AluI AGCT 3 cut(s) 253, 372, 1372
Alw26I GTCTC 1 cut(s) 1187
AlwI GGATC 4 cut(s) 13, 232, 1048, 1179
Aor51HI AGCGCT 1 cut(s) 921
AoxI GGCC 3 cut(s) 270, 571, 576
ApeKI GCWGC 4 cut(s) 741, 956, 1025, 1301
ApoI RAATTY 2 cut(s) 211, 625
AsiGI ACCGGT 1 cut(s) 401
Asp718I GGTACC 1 cut(s) 551
AspLEI GCGC 2 cut(s) 130, 922
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 4 cut(s) 107, 247, 370, 391
AvaII GGWCC 1 cut(s) 404
AxyI CCTNAGG 1 cut(s) 688
BalI TGGCCA 1 cut(s) 578
BanI GGYRCC 3 cut(s) 127, 245, 551
BbsI GAAGAC 1 cut(s) 319
BbvI GCAGC 4 cut(s) 753, 943, 1037, 1288
BccI CCATC 1 cut(s) 1238
BceAI ACGGC 2 cut(s) 91, 242
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 1 cut(s) 575
BcoDI GTCTC 1 cut(s) 1187
BfoI RGCGCY 2 cut(s) 131, 923
BglII AGATCT 1 cut(s) 1110
BisI GCNGC 5 cut(s) 291, 742, 957, 1026, 1302
BlsI GCNGC 5 cut(s) 292, 743, 958, 1027, 1303
BmcAI AGTACT 1 cut(s) 506
Bme1390I CCNGG 1 cut(s) 575
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 5 cut(s) 129, 247, 520, 553, 1128
BmrFI CCNGG 1 cut(s) 575
BmsI GCATC 2 cut(s) 968, 1112
BpiI GAAGAC 1 cut(s) 319
BpuEI CTTGAG 4 cut(s) 743, 1043, 1211, 1388
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 150, 241, 317
BsaWI WCCGGW 1 cut(s) 401
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 1016
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 3 cut(s) 360, 784, 1201
Bse21I CCTNAGG 1 cut(s) 688
Bse3DI GCAATG 3 cut(s) 116, 832, 1235
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 3 cut(s) 150, 241, 317
BseGI GGATG 3 cut(s) 143, 878, 1249
BseLI CCNNNNNNNGG 2 cut(s) 413, 1016
BseMI GCAATG 3 cut(s) 116, 832, 1235
BseMII CTCAG 4 cut(s) 220, 702, 921, 1121
BseNI ACTGG 3 cut(s) 360, 784, 1201
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 4 cut(s) 753, 943, 1037, 1288
BseYI CCCAGC 1 cut(s) 643
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 3 cut(s) 272, 573, 578
BshNI GGYRCC 3 cut(s) 127, 245, 551
BshTI ACCGGT 1 cut(s) 401
BsiSI CCGG 3 cut(s) 269, 402, 1392
BslFI GGGAC 2 cut(s) 357, 432
BslI CCNNNNNNNGG 2 cut(s) 413, 1016
BsmAI GTCTC 1 cut(s) 1187
BsmFI GGGAC 2 cut(s) 357, 432
BsmI GAATGC 1 cut(s) 884
BsnI GGCC 3 cut(s) 272, 573, 578
Bsp143I GATC 6 cut(s) 5, 55, 237, 1040, 1110, 1171
Bsp19I CCATGG 1 cut(s) 150
Bsp68I TCGCGA 1 cut(s) 284
BspACI CCGC 2 cut(s) 290, 799
BspANI GGCC 3 cut(s) 272, 573, 578
BspCNI CTCAG 4 cut(s) 219, 701, 922, 1120
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 5 cut(s) 129, 247, 520, 553, 1128
BspPI GGATC 4 cut(s) 13, 232, 1048, 1179
BspT107I GGYRCC 3 cut(s) 127, 245, 551
BsrDI GCAATG 3 cut(s) 116, 832, 1235
BsrFI RCCGGY 1 cut(s) 401
BsrI ACTGG 3 cut(s) 360, 784, 1201
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 3 cut(s) 150, 241, 317
BssMI GATC 6 cut(s) 5, 55, 237, 1040, 1110, 1171
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 3 cut(s) 150, 241, 317
Bst2UI CCWGG 1 cut(s) 575
Bst4CI ACNGT 3 cut(s) 412, 636, 910
Bst6I CTCTTC 1 cut(s) 849
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 3 cut(s) 470, 767, 1034
BstC8I GCNNGC 4 cut(s) 255, 739, 897, 1306
BstDEI CTNAG 4 cut(s) 206, 688, 930, 1107
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 3 cut(s) 143, 878, 1249
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 2 cut(s) 131, 923
BstHHI GCGC 2 cut(s) 130, 922
BstKTI GATC 6 cut(s) 8, 58, 240, 1043, 1113, 1174
BstMAI GTCTC 1 cut(s) 1187
BstMBI GATC 6 cut(s) 5, 55, 237, 1040, 1110, 1171
BstMWI GCNNNNNNNGC 5 cut(s) 259, 290, 470, 767, 1034
BstNI CCWGG 1 cut(s) 575
BstNSI RCATGY 2 cut(s) 664, 1037
BstSCI CCNGG 1 cut(s) 573
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 4 cut(s) 753, 943, 1037, 1288
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 2 cut(s) 1110, 1171
BstXI CCANNNNNNTGG 1 cut(s) 1123
BstYI RGATCY 2 cut(s) 1110, 1171
Bsu36I CCTNAGG 1 cut(s) 688
BsuRI GGCC 3 cut(s) 272, 573, 578
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 3 cut(s) 143, 878, 1249
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 2 cut(s) 353, 870
BtuMI TCGCGA 1 cut(s) 284
Cac8I GCNNGC 4 cut(s) 255, 739, 897, 1306
CfoI GCGC 2 cut(s) 130, 922
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 404
Csp6I GTAC 6 cut(s) 155, 191, 505, 552, 945, 1364
CspAI ACCGGT 1 cut(s) 401
CviAII CATG 6 cut(s) 151, 479, 661, 1034, 1117, 1330
CviQI GTAC 6 cut(s) 155, 191, 505, 552, 945, 1364
DdeI CTNAG 4 cut(s) 206, 688, 930, 1107
DinI GGCGCC 1 cut(s) 129
DpnI GATC 6 cut(s) 7, 57, 239, 1042, 1112, 1173
DpnII GATC 6 cut(s) 5, 55, 237, 1040, 1110, 1171
EaeI YGGCCR 2 cut(s) 270, 576
Eam1104I CTCTTC 1 cut(s) 849
EarI CTCTTC 1 cut(s) 849
Eco130I CCWWGG 3 cut(s) 150, 241, 317
Eco147I AGGCCT 1 cut(s) 573
Eco47I GGWCC 1 cut(s) 404
Eco47III AGCGCT 1 cut(s) 921
Eco81I CCTNAGG 1 cut(s) 688
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 573
EcoT14I CCWWGG 3 cut(s) 150, 241, 317
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 3 cut(s) 150, 241, 317
FaeI CATG 6 cut(s) 154, 482, 664, 1037, 1120, 1333
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 2 cut(s) 357, 432
FatI CATG 6 cut(s) 150, 478, 660, 1033, 1116, 1329
FauNDI CATATG 1 cut(s) 763
Fnu4HI GCNGC 5 cut(s) 291, 742, 957, 1026, 1302
FokI GGATG 3 cut(s) 130, 885, 1256
Fsp4HI GCNGC 5 cut(s) 291, 742, 957, 1026, 1302
GlaI GCGC 2 cut(s) 129, 921
GluI GCNGC 5 cut(s) 291, 742, 957, 1026, 1302
GsaI CCCAGC 1 cut(s) 647
HaeII RGCGCY 2 cut(s) 131, 923
HaeIII GGCC 3 cut(s) 272, 573, 578
HapII CCGG 3 cut(s) 269, 402, 1392
HhaI GCGC 2 cut(s) 130, 922
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 6 cut(s) 154, 482, 664, 1037, 1120, 1333
Hin6I GCGC 2 cut(s) 128, 920
HinP1I GCGC 2 cut(s) 128, 920
HincII GTYRAC 1 cut(s) 1318
HindII GTYRAC 1 cut(s) 1318
HinfI GANTC 7 cut(s) 45, 175, 345, 812, 1269, 1337, 1395
HpaII CCGG 3 cut(s) 269, 402, 1392
HphI GGTGA 4 cut(s) 107, 247, 370, 391
Hpy166II GTNNAC 3 cut(s) 73, 1202, 1318
Hpy188I TCNGA 5 cut(s) 169, 209, 311, 931, 1110
Hpy188III TCNNGA 6 cut(s) 283, 690, 722, 732, 1060, 1175
Hpy8I GTNNAC 3 cut(s) 73, 1202, 1318
Hpy99I CGWCG 2 cut(s) 53, 56
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 3 cut(s) 412, 636, 910
HpyCH4IV ACGT 2 cut(s) 364, 434
HpyF10VI GCNNNNNNNGC 5 cut(s) 259, 290, 470, 767, 1034
HpyF3I CTNAG 4 cut(s) 206, 688, 930, 1107
HpySE526I ACGT 2 cut(s) 364, 434
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 6 cut(s) 154, 482, 664, 1037, 1120, 1333
HspAI GCGC 2 cut(s) 128, 920
KasI GGCGCC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 555
Kzo9I GATC 6 cut(s) 5, 55, 237, 1040, 1110, 1171
LmnI GCTCC 2 cut(s) 106, 927
Lsp1109I GCAGC 4 cut(s) 753, 943, 1037, 1288
LweI GCATC 2 cut(s) 968, 1112
MaeII ACGT 2 cut(s) 364, 434
MaeIII GTNAC 4 cut(s) 636, 648, 656, 982
MalI GATC 6 cut(s) 7, 57, 239, 1042, 1112, 1173
MboI GATC 6 cut(s) 5, 55, 237, 1040, 1110, 1171
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 2 cut(s) 1110, 1171
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 6 cut(s) 211, 223, 625, 700, 948, 1351
MluNI TGGCCA 1 cut(s) 578
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 3 cut(s) 339, 1278, 1404
MmeI TCCRAC 5 cut(s) 192, 431, 857, 1050, 1404
Mox20I TGGCCA 1 cut(s) 578
MscI TGGCCA 1 cut(s) 578
MseI TTAA 2 cut(s) 426, 1133
MslI CAYNNNNRTG 4 cut(s) 749, 820, 980, 1121
Msp20I TGGCCA 1 cut(s) 578
MspI CCGG 3 cut(s) 269, 402, 1392
MspR9I CCNGG 1 cut(s) 575
MunI CAATTG 1 cut(s) 948
Mva1269I GAATGC 1 cut(s) 884
MvaI CCWGG 1 cut(s) 575
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 5 cut(s) 259, 290, 470, 767, 1034
NarI GGCGCC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 150
NdeI CATATG 1 cut(s) 763
NdeII GATC 6 cut(s) 5, 55, 237, 1040, 1110, 1171
NlaIII CATG 6 cut(s) 154, 482, 664, 1037, 1120, 1333
NlaIV GGNNCC 5 cut(s) 129, 247, 520, 553, 1128
NmuCI GTSAC 2 cut(s) 656, 982
NruI TCGCGA 1 cut(s) 284
NspI RCATGY 2 cut(s) 664, 1037
OliI CACNNNNGTG 1 cut(s) 820
PceI AGGCCT 1 cut(s) 573
PciI ACATGT 1 cut(s) 660
PctI GAATGC 1 cut(s) 884
PfeI GAWTC 4 cut(s) 45, 175, 812, 1337
PflMI CCANNNNNTGG 1 cut(s) 413
PinAI ACCGGT 1 cut(s) 401
PkrI GCNGC 5 cut(s) 292, 743, 958, 1027, 1303
PleI GAGTC 3 cut(s) 339, 1277, 1403
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 3 cut(s) 339, 1277, 1403
PscI ACATGT 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 573
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 5 cut(s) 129, 247, 520, 553, 1128
PspPI GGNCC 1 cut(s) 404
PsuI RGATCY 2 cut(s) 1110, 1171
RruI TCGCGA 1 cut(s) 284
RsaI GTAC 6 cut(s) 156, 192, 506, 553, 946, 1365
RsaNI GTAC 6 cut(s) 155, 191, 505, 552, 945, 1364
RseI CAYNNNNRTG 4 cut(s) 749, 820, 980, 1121
SaqAI TTAA 2 cut(s) 426, 1133
SatI GCNGC 5 cut(s) 291, 742, 957, 1026, 1302
Sau3AI GATC 6 cut(s) 5, 55, 237, 1040, 1110, 1171
Sau96I GGNCC 1 cut(s) 404
ScaI AGTACT 1 cut(s) 506
SchI GAGTC 3 cut(s) 339, 1278, 1404
ScrFI CCNGG 1 cut(s) 575
SfaNI GCATC 2 cut(s) 968, 1112
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 4 cut(s) 749, 820, 980, 1121
SmlI CTYRAG 4 cut(s) 722, 1058, 1190, 1367
SmoI CTYRAG 4 cut(s) 722, 1058, 1190, 1367
Sse9I AATT 6 cut(s) 211, 223, 625, 700, 948, 1351
SseBI AGGCCT 1 cut(s) 573
SsiI CCGC 2 cut(s) 290, 799
SspDI GGCGCC 1 cut(s) 127
StuI AGGCCT 1 cut(s) 573
StyD4I CCNGG 1 cut(s) 573
StyI CCWWGG 3 cut(s) 150, 241, 317
TaaI ACNGT 3 cut(s) 412, 636, 910
TaiI ACGT 2 cut(s) 367, 437
TaqI TCGA 1 cut(s) 48
TasI AATT 6 cut(s) 211, 223, 625, 700, 948, 1351
TatI WGTACW 2 cut(s) 504, 1363
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 4 cut(s) 45, 175, 812, 1337
Tru1I TTAA 2 cut(s) 426, 1133
Tru9I TTAA 2 cut(s) 426, 1133
TscAI CASTG 2 cut(s) 360, 870
TseFI GTSAC 2 cut(s) 656, 982
TseI GCWGC 4 cut(s) 741, 956, 1025, 1301
Tsp45I GTSAC 2 cut(s) 656, 982
TspDTI ATGAA 6 cut(s) 10, 104, 843, 855, 1277, 1346
TspRI CASTG 2 cut(s) 360, 870
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 2 cut(s) 211, 625
XceI RCATGY 2 cut(s) 664, 1037
ZrmI AGTACT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.