Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Reverse (-)

16309798 .. 16312622

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGTTTCATCTCTTGCATCTCATTTCCGACGATCAATTCAAGAATTCTATCGACTCACCACTTTTCCAAGCACTCGACTTCAGCGTCTTCTTCATATTCACTTAAGTTTGCTTTGAGACGTCAGGAGGATAAACCCAAAGTCTCGTTTTTTCTTCCATTAACGTCTTCGTTAATGGCGACCCCTATTCAAGCCTCTTCTTCCTCCACCATTGGTGAGACCAGTGATGGCTTGAAGGTCCAGTCTCATGTTTCAATTGGAGCAAACGATCTGCTGATTGTTGGACCGGGTGTTCTTGGACGCTTAGTTGCAGAACAGTGGAGACAGGAACATCCAGAGTCTCAAATCTTTGGGCAGACAGTAACAACAAATCATCATGGTGAGTTGGAGAATTTGGGTATCAAACCATCTCTTAAAGGAACCGAATATGGGGGAAAGTTCTCCTATGTGATCTTTTGTGCTCCACCATCACAAAGCGCTGATTATGCTGGTGAAGTCAGGAATGCAGCATCAAACTGGAATGGCGAAGGATCATTCTTATTCACATCTAGTTCTGCACCTTATGATTGCTTTGATAACGGAGAATGCAACGAGGATTCTCCAGTAGTGCCACTGGGAAAGAGTCCAAGAACTGATGTGCTTTTGAAAGCTGAAAAAGTAGTGTTGGAATGTGGAGGGACTGTCCTTAGACTAGCAGGGCTTTACACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAGACAATTGATGCTCGTCCTGATCATATTCTAAATCTCATACACTATGAGGATGCAGCATCGCTGGCAGTTGCAATCATGAAGAAGAAAGCCGGTGCTCGGATTTTCTTGGGTTGTGACAACCATCCTTTGTCAAGGCAAGAGGTGATGGACCTGATGGCTCAAAGCGGAAAATTTGATAAGAAGTTCAAAGGTTTTACAAGCACCAGTGGTCCTTTAGGGAAGAAGCTGAACAACTCTAAGACACGAGCGGAGATAGGATGGGAGCCGAAGTATCCAAGCTTTGCCCAATTTTTTGGAGTATCGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

38.21

Weight (kDa)

8.13

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AatII	GACGTC	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	995
AciI	CCGC	2 cut(s)	912, 995
AclWI	GGATC	1 cut(s)	538
AcsI	RAATTY	3 cut(s)	45, 391, 917
AcuI	CTGAAG	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	121
AfeI	AGCGCT	1 cut(s)	478
AfiI	CCNNNNNNNGG	2 cut(s)	429, 843
AflII	CTTAAG	1 cut(s)	104
AgsI	TTSAA	6 cut(s)	42, 191, 235, 255, 646, 934
AloI	GAACNNNNNNTCC	2 cut(s)	276, 308
AluBI	AGCT	3 cut(s)	650, 973, 1026
AluI	AGCT	3 cut(s)	650, 973, 1026
Alw21I	GWGCWC	3 cut(s)	463, 724, 844
Alw26I	GTCTC	7 cut(s)	112, 148, 212, 249, 316, 345, 740
Alw44I	GTGCAC	1 cut(s)	720
AlwI	GGATC	1 cut(s)	538
Aor51HI	AGCGCT	1 cut(s)	478
ApaLI	GTGCAC	1 cut(s)	720
ApeKI	GCWGC	2 cut(s)	506, 800
ApoI	RAATTY	3 cut(s)	45, 391, 917
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	4 cut(s)	238, 284, 895, 956
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	5 cut(s)	50, 227, 392, 503, 901
AvaII	GGWCC	4 cut(s)	238, 284, 895, 956
BaeGI	GKGCMC	1 cut(s)	724
BauI	CACGAG	1 cut(s)	990
BbsI	GAAGAC	2 cut(s)	81, 159
Bbv12I	GWGCWC	3 cut(s)	463, 724, 844
BbvI	GCAGC	2 cut(s)	518, 812
BccI	CCATC	7 cut(s)	221, 415, 475, 876, 886, 895, 999
BciVI	GTATCC	1 cut(s)	1029
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	7 cut(s)	112, 148, 212, 249, 316, 345, 740
BfaI	CTAG	3 cut(s)	549, 692, 714
BfoI	RGCGCY	1 cut(s)	480
BfrI	CTTAAG	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	1029
BisI	GCNGC	2 cut(s)	507, 801
BlsI	GCNGC	2 cut(s)	508, 802
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	4 cut(s)	238, 284, 895, 956
BmgT120I	GGNCC	4 cut(s)	238, 284, 895, 956
BmiI	GGNNCC	2 cut(s)	421, 1011
BmrFI	CCNGG	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	623
BmsI	GCATC	5 cut(s)	27, 518, 745, 787, 812
BmuI	ACTGGG	1 cut(s)	623
BpiI	GAAGAC	2 cut(s)	81, 159
BpmI	CTGGAG	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	212
BsaXI	ACNNNNNCTCC	4 cut(s)	666, 696, 1001, 1031
Bsc4I	CCNNNNNNNGG	2 cut(s)	429, 843
Bse118I	RCCGGY	1 cut(s)	836
Bse1I	ACTGG	7 cut(s)	222, 241, 521, 602, 618, 737, 951
BseGI	GGATG	4 cut(s)	331, 802, 868, 1010
BseLI	CCNNNNNNNGG	2 cut(s)	429, 843
BseNI	ACTGG	7 cut(s)	222, 241, 521, 602, 618, 737, 951
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	2 cut(s)	518, 812
BsgI	GTGCAG	1 cut(s)	540
BsiHKAI	GWGCWC	3 cut(s)	463, 724, 844
BsiSI	CCGG	2 cut(s)	287, 837
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	2 cut(s)	429, 843
BsmAI	GTCTC	7 cut(s)	112, 148, 212, 249, 316, 345, 740
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	691
BsmI	GAATGC	2 cut(s)	508, 590
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	3 cut(s)	463, 724, 844
Bsp143I	GATC	5 cut(s)	33, 268, 450, 530, 766
BspACI	CCGC	2 cut(s)	912, 995
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	2 cut(s)	421, 1011
BspPI	GGATC	1 cut(s)	538
BspTI	CTTAAG	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	995
BsrFI	RCCGGY	1 cut(s)	836
BsrI	ACTGG	7 cut(s)	222, 241, 521, 602, 618, 737, 951
BssAI	RCCGGY	1 cut(s)	836
BssMI	GATC	5 cut(s)	33, 268, 450, 530, 766
BssNI	GRCGYC	1 cut(s)	121
BssSI	CACGAG	1 cut(s)	990
Bst2BI	CACGAG	1 cut(s)	990
Bst4CI	ACNGT	3 cut(s)	318, 361, 682
Bst6I	CTCTTC	1 cut(s)	202
BstACI	GRCGYC	1 cut(s)	121
BstAFI	CTTAAG	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	3 cut(s)	304, 686, 984
BstF5I	GGATG	4 cut(s)	331, 802, 868, 1010
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	5 cut(s)	36, 271, 453, 533, 769
BstMAI	GTCTC	7 cut(s)	112, 148, 212, 249, 316, 345, 740
BstMBI	GATC	5 cut(s)	33, 268, 450, 530, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 809
BstSCI	CCNGG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	724
BstV1I	GCAGC	2 cut(s)	518, 812
BstV2I	GAAGAC	2 cut(s)	81, 159
BstXI	CCANNNNNNTGG	1 cut(s)	1040
BsuI	GTATCC	1 cut(s)	1029
BtgZI	GCGATG	1 cut(s)	789
BtsCI	GGATG	4 cut(s)	331, 802, 868, 1010
BtsIMutI	CAGTG	4 cut(s)	229, 323, 611, 958
Cac8I	GCNNGC	1 cut(s)	810
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	1 cut(s)	479
Cfr10I	RCCGGY	1 cut(s)	836
Cfr13I	GGNCC	4 cut(s)	238, 284, 895, 956
CseI	GACGC	2 cut(s)	75, 309
CviAII	CATG	3 cut(s)	248, 377, 823
CviJI	RGCY	9 cut(s)	194, 231, 650, 700, 836, 905, 973, 1012, 1026
CviKI_1	RGCY	9 cut(s)	194, 231, 650, 700, 836, 905, 973, 1012, 1026
DdeI	CTNAG	3 cut(s)	304, 686, 984
DpnI	GATC	5 cut(s)	35, 270, 452, 532, 768
DpnII	GATC	5 cut(s)	33, 268, 450, 530, 766
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	4 cut(s)	238, 284, 895, 956
Eco47III	AGCGCT	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	3 cut(s)	251, 380, 826
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	3 cut(s)	247, 376, 822
FbaI	TGATCA	1 cut(s)	766
Fnu4HI	GCNGC	2 cut(s)	507, 801
FokI	GGATG	4 cut(s)	318, 809, 855, 1017
Fsp4HI	GCNGC	2 cut(s)	507, 801
FspBI	CTAG	3 cut(s)	549, 692, 714
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	2 cut(s)	507, 801
GsuI	CTGGAG	1 cut(s)	585
HaeII	RGCGCY	1 cut(s)	480
HapII	CCGG	2 cut(s)	287, 837
HgaI	GACGC	2 cut(s)	75, 309
HhaI	GCGC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	251, 380, 826
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HindIII	AAGCTT	1 cut(s)	1024
HinfI	GANTC	4 cut(s)	55, 338, 596, 622
HpaII	CCGG	2 cut(s)	287, 837
HphI	GGTGA	5 cut(s)	50, 227, 392, 503, 901
Hpy166II	GTNNAC	1 cut(s)	722
Hpy188I	TCNGA	2 cut(s)	30, 846
Hpy188III	TCNNGA	6 cut(s)	42, 125, 335, 499, 764, 823
Hpy8I	GTNNAC	1 cut(s)	722
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	229, 521
HpyCH4III	ACNGT	3 cut(s)	318, 361, 682
HpyCH4IV	ACGT	2 cut(s)	121, 164
HpyCH4V	TGCA	8 cut(s)	18, 311, 506, 557, 588, 722, 800, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 809
HpyF3I	CTNAG	3 cut(s)	304, 686, 984
HpySE526I	ACGT	2 cut(s)	121, 164
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	251, 380, 826
HspAI	GCGC	1 cut(s)	477
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	5 cut(s)	33, 268, 450, 530, 766
LmnI	GCTCC	3 cut(s)	260, 466, 1009
Lsp1109I	GCAGC	2 cut(s)	518, 812
LweI	GCATC	5 cut(s)	27, 518, 745, 787, 812
MaeI	CTAG	3 cut(s)	549, 692, 714
MaeII	ACGT	2 cut(s)	121, 164
MaeIII	GTNAC	2 cut(s)	361, 860
MalI	GATC	5 cut(s)	35, 270, 452, 532, 768
MbiI	CCGCTC	1 cut(s)	995
MboI	GATC	5 cut(s)	33, 268, 450, 530, 766
MboII	GAAGA	9 cut(s)	81, 84, 146, 159, 189, 192, 838, 841, 979
MfeI	CAATTG	2 cut(s)	255, 750
MhlI	GDGCHC	3 cut(s)	463, 724, 844
MluCI	AATT	7 cut(s)	37, 45, 255, 391, 750, 917, 1034
MlyI	GAGTC	3 cut(s)	49, 347, 631
MmeI	TCCRAC	4 cut(s)	53, 262, 366, 645
MnlI	CCTC	8 cut(s)	121, 205, 214, 586, 668, 710, 787, 880
MseI	TTAA	4 cut(s)	105, 161, 173, 414
MslI	CAYNNNNRTG	1 cut(s)	378
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	2 cut(s)	287, 837
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	2 cut(s)	255, 750
Mva1269I	GAATGC	2 cut(s)	508, 590
MwoI	GCNNNNNNNGC	2 cut(s)	485, 809
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	5 cut(s)	33, 268, 450, 530, 766
NlaIII	CATG	3 cut(s)	251, 380, 826
NlaIV	GGNNCC	2 cut(s)	421, 1011
NmuCI	GTSAC	1 cut(s)	860
PagI	TCATGA	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 176
PctI	GAATGC	2 cut(s)	508, 590
PfeI	GAWTC	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	508, 802
PleI	GAGTC	3 cut(s)	49, 346, 630
PpsI	GAGTC	3 cut(s)	49, 346, 630
PspN4I	GGNNCC	2 cut(s)	421, 1011
PspPI	GGNCC	4 cut(s)	238, 284, 895, 956
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	4 cut(s)	105, 161, 173, 414
SatI	GCNGC	2 cut(s)	507, 801
Sau3AI	GATC	5 cut(s)	33, 268, 450, 530, 766
Sau96I	GGNCC	4 cut(s)	238, 284, 895, 956
SchI	GAGTC	3 cut(s)	49, 347, 631
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	3 cut(s)	463, 724, 844
SfaNI	GCATC	5 cut(s)	27, 518, 745, 787, 812
SinI	GGWCC	4 cut(s)	238, 284, 895, 956
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	7 cut(s)	37, 45, 255, 391, 750, 917, 1034
SsiI	CCGC	2 cut(s)	912, 995
SspMI	CTAG	3 cut(s)	549, 692, 714
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	3 cut(s)	318, 361, 682
TaiI	ACGT	2 cut(s)	124, 167
TaqI	TCGA	3 cut(s)	53, 77, 1049
TasI	AATT	7 cut(s)	37, 45, 255, 391, 750, 917, 1034
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	4 cut(s)	105, 161, 173, 414
Tru9I	TTAA	4 cut(s)	105, 161, 173, 414
TscAI	CASTG	4 cut(s)	229, 323, 618, 958
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	2 cut(s)	506, 800
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	2 cut(s)	84, 839
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	4 cut(s)	229, 323, 618, 958
Vha464I	CTTAAG	1 cut(s)	104
VneI	GTGCAC	1 cut(s)	720
VpaK11BI	GGWCC	4 cut(s)	238, 284, 895, 956
XapI	RAATTY	3 cut(s)	45, 391, 917
XspI	CTAG	3 cut(s)	549, 692, 714
ZraI	GACGTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.