Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Reverse (-)

14864941 .. 14867976

Gene Structure 3036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1174800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGGCACCATTGCTGGCGTTATCTTCCTCACAACAACTCCATTGATAAGACCTCGAGGACTCGTCGGGCGTTTCCCTAATCTTCACTGCCCTTCTTCCAAGTTTTCACATTGCCGGACCACCGCCAACACAGCCACGGACGCCGCGCCTTTCCAAGTCTCCGCCGCAGCATCGTCGCCGTCATCTGCCATTGATGAAGAGAAGGAGGTAACTTCTTCTGGGAATGTTGGAGCGGATGACCTGCTGATTGTGGGGCCGGGTGTCCTTGGGCGCTTGGTGGCACAAAAATGGCGGGAGGAGCATCCTGGGTGTCAAATACATGGGCAAACAGTGACAGCTGATCACCACGAGGAGTTGAGTGAGGAGGGTATTAATCCATGTTCAAAGGGGACCAAAACGACCCACAAGTTTCCTTATGTCATCTTTTGTGCTCCACCATCAAGAACCTCAGACTACTCTGCTGATGTTAGAATGGCTGCATTGAACTGGAATGGTGAAGGTTCGTTTTTGTTTACATCAAGCTCTGCACCGTATGATTGCAACGACAATGGTTCATGTGATGAGGACACTCCAGTAGTGCCAATAGGGAGGAGCCCCAGGACCGATGTCCTTCTTAAAGCAGAAGAAGTTGTGCTGGAGTTTGGCGGTGTAGTTCTTAGATTGGCGGCGCTTTATATATCCGTTATGAAATTATTTAATATAGTTCTATCAATATGCATTACTTTCCCTTTTATCATTACTTTCTCTGTTCAATTTTGTTACTTAAAAGTCACTTACATTTGGCTTTTCCGTTTCTCTTTAAATTTCAAATCACGCTTTAGATGGTTACGCTTTGTCATGGTCAGTTATATACTTCCTGTTTCATTGAATTGTCAGGATGCAGCTTCCCTCTCTGTTGCAATCTTGAAGAAGAGATTACGTAACCAGATCCTCTTGGGTTGTGACAATCATCCATTGTCCAGGCAAGAAGTGATGGACTTAGTCACTAAAAGTGGCAAATTTTCAGAAACGTTTGAGGCCTTTACAGGGACCAATGATCCCTTGGGTAAGAGATTAAACAACTCAAAAACTCGCGAGAAAATAGGGTGGGAGCCAAAATACCCCAGTTTCGCTCACTTCCTTGAGAGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

41.68

Weight (kDa)

7.97

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	5
AccBSI	CCGCTC	1 cut(s)	233
AccII	CGCG	2 cut(s)	146, 1074
AciI	CCGC	8 cut(s)	123, 144, 162, 165, 233, 292, 645, 665
AclI	AACGTT	1 cut(s)	1010
AclWI	GGATC	2 cut(s)	922, 1031
AcsI	RAATTY	2 cut(s)	802, 998
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	1026
AgsI	TTSAA	6 cut(s)	384, 484, 752, 808, 868, 907
AjnI	CCWGG	3 cut(s)	304, 596, 959
AluBI	AGCT	3 cut(s)	338, 522, 884
AluI	AGCT	3 cut(s)	338, 522, 884
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	2 cut(s)	922, 1031
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	2 cut(s)	254, 1017
ApeKI	GCWGC	3 cut(s)	167, 476, 881
ApoI	RAATTY	2 cut(s)	802, 998
AseI	ATTAAT	1 cut(s)	372
AspLEI	GCGC	3 cut(s)	148, 273, 670
AspS9I	GGNCC	5 cut(s)	117, 254, 390, 600, 1029
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	335, 506
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	4 cut(s)	117, 390, 600, 1029
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	596
BauI	CACGAG	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	3 cut(s)	179, 463, 893
BccI	CCATC	3 cut(s)	445, 816, 967
BceAI	ACGGC	1 cut(s)	163
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BciT130I	CCWGG	3 cut(s)	306, 598, 961
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	163
BfoI	RGCGCY	2 cut(s)	274, 671
BfuAI	ACCTGC	1 cut(s)	249
BisI	GCNGC	6 cut(s)	144, 165, 168, 477, 666, 882
BlsI	GCNGC	6 cut(s)	145, 166, 169, 478, 667, 883
Bme1390I	CCNGG	4 cut(s)	258, 306, 598, 961
Bme18I	GGWCC	4 cut(s)	117, 390, 600, 1029
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	5 cut(s)	117, 254, 390, 600, 1029
BmiI	GGNNCC	6 cut(s)	7, 255, 391, 593, 1030, 1092
BmrFI	CCNGG	4 cut(s)	258, 306, 598, 961
BmrI	ACTGGG	1 cut(s)	1098
BmsI	GCATC	3 cut(s)	179, 310, 868
BmuI	ACTGGG	1 cut(s)	1098
BoxI	GACNNNNGTC	1 cut(s)	605
BpmI	CTGGAG	2 cut(s)	555, 656
BpuMI	CCSGG	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	920
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	5 cut(s)	135, 265, 305, 596, 1041
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	1 cut(s)	1026
Bse1I	ACTGG	3 cut(s)	491, 572, 1104
Bse3DI	GCAATG	2 cut(s)	9, 109
BseBI	CCWGG	3 cut(s)	306, 598, 961
BseDI	CCNNGG	5 cut(s)	135, 265, 305, 596, 1041
BseGI	GGATG	4 cut(s)	241, 301, 883, 949
BseLI	CCNNNNNNNGG	1 cut(s)	1026
BseMI	GCAATG	2 cut(s)	9, 109
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	3 cut(s)	491, 572, 1104
BseRI	GAGGAG	4 cut(s)	311, 365, 377, 604
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	179, 463, 893
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	2 cut(s)	146, 1074
BshFI	GGCC	2 cut(s)	256, 1019
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	433
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	115, 257
BslFI	GGGAC	2 cut(s)	403, 1042
BslI	CCNNNNNNNGG	1 cut(s)	1026
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	403, 1042
BsnI	GGCC	2 cut(s)	256, 1019
BsoBI	CYCGRG	1 cut(s)	54
Bsp1286I	GDGCHC	3 cut(s)	8, 433, 596
Bsp143I	GATC	3 cut(s)	340, 927, 1036
Bsp68I	TCGCGA	1 cut(s)	1074
BspACI	CCGC	8 cut(s)	123, 144, 162, 165, 233, 292, 645, 665
BspANI	GGCC	2 cut(s)	256, 1019
BspCNI	CTCAG	1 cut(s)	461
BspFNI	CGCG	2 cut(s)	146, 1074
BspLI	GGNNCC	6 cut(s)	7, 255, 391, 593, 1030, 1092
BspMI	ACCTGC	1 cut(s)	249
BspPI	GGATC	2 cut(s)	922, 1031
BspT107I	GGYRCC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	9, 109
BsrI	ACTGG	3 cut(s)	491, 572, 1104
BssECI	CCNNGG	5 cut(s)	135, 265, 305, 596, 1041
BssMI	GATC	3 cut(s)	340, 927, 1036
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	347
BssT1I	CCWWGG	2 cut(s)	265, 1041
Bst2BI	CACGAG	1 cut(s)	347
Bst2UI	CCWGG	3 cut(s)	306, 598, 961
Bst4CI	ACNGT	2 cut(s)	331, 531
Bst6I	CTCTTC	2 cut(s)	192, 905
BstACI	GRCGYC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	920
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	448, 656, 979
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	4 cut(s)	241, 301, 883, 949
BstFNI	CGCG	2 cut(s)	146, 1074
BstH2I	RGCGCY	2 cut(s)	274, 671
BstHHI	GCGC	3 cut(s)	148, 273, 670
BstKTI	GATC	3 cut(s)	343, 930, 1039
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	3 cut(s)	340, 927, 1036
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 140, 298
BstNI	CCWGG	3 cut(s)	306, 598, 961
BstPAI	GACNNNNGTC	1 cut(s)	605
BstSCI	CCNGG	4 cut(s)	256, 304, 596, 959
BstSLI	GKGCMC	1 cut(s)	8
BstSNI	TACGTA	1 cut(s)	920
BstUI	CGCG	2 cut(s)	146, 1074
BstV1I	GCAGC	3 cut(s)	179, 463, 893
BstX2I	RGATCY	1 cut(s)	927
BstYI	RGATCY	1 cut(s)	927
BsuRI	GGCC	2 cut(s)	256, 1019
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	4 cut(s)	241, 301, 883, 949
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	85, 336
BtuMI	TCGCGA	1 cut(s)	1074
BveI	ACCTGC	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	3 cut(s)	148, 273, 670
Cfr13I	GGNCC	5 cut(s)	117, 254, 390, 600, 1029
CseI	GACGC	1 cut(s)	149
CviAII	CATG	4 cut(s)	320, 378, 555, 838
DdeI	CTNAG	3 cut(s)	448, 656, 979
DpnI	GATC	3 cut(s)	342, 929, 1038
DpnII	GATC	3 cut(s)	340, 927, 1036
DraI	TTTAAA	1 cut(s)	801
Eam1104I	CTCTTC	2 cut(s)	192, 905
EarI	CTCTTC	2 cut(s)	192, 905
EciI	GGCGGA	1 cut(s)	151
Eco105I	TACGTA	1 cut(s)	920
Eco130I	CCWWGG	2 cut(s)	265, 1041
Eco147I	AGGCCT	1 cut(s)	1019
Eco24I	GRGCYC	1 cut(s)	596
Eco47I	GGWCC	4 cut(s)	117, 390, 600, 1029
Eco88I	CYCGRG	1 cut(s)	54
EcoRII	CCWGG	3 cut(s)	304, 596, 959
EcoT14I	CCWWGG	2 cut(s)	265, 1041
EcoT22I	ATGCAT	1 cut(s)	719
EcoT38I	GRGCYC	1 cut(s)	596
ErhI	CCWWGG	2 cut(s)	265, 1041
FaeI	CATG	4 cut(s)	323, 381, 558, 841
FaqI	GGGAC	2 cut(s)	403, 1042
FatI	CATG	4 cut(s)	319, 377, 554, 837
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	6 cut(s)	144, 165, 168, 477, 666, 882
FokI	GGATG	4 cut(s)	248, 288, 890, 936
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	6 cut(s)	144, 165, 168, 477, 666, 882
GlaI	GCGC	3 cut(s)	147, 272, 669
GluI	GCNGC	6 cut(s)	144, 165, 168, 477, 666, 882
GsuI	CTGGAG	2 cut(s)	555, 656
HaeII	RGCGCY	2 cut(s)	274, 671
HaeIII	GGCC	2 cut(s)	256, 1019
HapII	CCGG	2 cut(s)	115, 257
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	3 cut(s)	148, 273, 670
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	4 cut(s)	323, 381, 558, 841
Hin6I	GCGC	3 cut(s)	146, 271, 668
HinP1I	GCGC	3 cut(s)	146, 271, 668
HinfI	GANTC	1 cut(s)	60
HpaII	CCGG	2 cut(s)	115, 257
HphI	GGTGA	2 cut(s)	335, 506
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	2 cut(s)	451, 1006
Hpy188III	TCNNGA	4 cut(s)	441, 875, 904, 1073
Hpy8I	GTNNAC	1 cut(s)	513
Hpy99I	CGWCG	2 cut(s)	68, 178
HpyAV	CCTTC	4 cut(s)	102, 196, 491, 620
HpyCH4III	ACNGT	2 cut(s)	331, 531
HpyCH4IV	ACGT	2 cut(s)	919, 1010
HpyCH4V	TGCA	6 cut(s)	479, 527, 540, 717, 881, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 140, 298
HpyF3I	CTNAG	3 cut(s)	448, 656, 979
HpySE526I	ACGT	2 cut(s)	919, 1010
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	323, 381, 558, 841
HspAI	GCGC	3 cut(s)	146, 271, 668
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	340, 927, 1036
LmnI	GCTCC	5 cut(s)	230, 298, 436, 591, 1090
Lsp1109I	GCAGC	3 cut(s)	179, 463, 893
LweI	GCATC	3 cut(s)	179, 310, 868
MaeII	ACGT	2 cut(s)	919, 1010
MaeIII	GTNAC	8 cut(s)	208, 331, 758, 769, 825, 920, 941, 982
MalI	GATC	3 cut(s)	342, 929, 1038
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	3 cut(s)	340, 927, 1036
MboII	GAAGA	8 cut(s)	16, 74, 87, 207, 209, 635, 919, 922
MflI	RGATCY	1 cut(s)	927
MhlI	GDGCHC	3 cut(s)	8, 433, 596
MluCI	AATT	5 cut(s)	689, 752, 802, 868, 998
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	208
Mph1103I	ATGCAT	1 cut(s)	719
MseI	TTAA	6 cut(s)	372, 615, 696, 764, 800, 1055
MslI	CAYNNNNRTG	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	2 cut(s)	115, 257
MspR9I	CCNGG	4 cut(s)	258, 306, 598, 961
MvaI	CCWGG	3 cut(s)	306, 598, 961
MvnI	CGCG	2 cut(s)	146, 1074
MwoI	GCNNNNNNNGC	3 cut(s)	131, 140, 298
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	340, 927, 1036
NlaIII	CATG	4 cut(s)	323, 381, 558, 841
NlaIV	GGNNCC	6 cut(s)	7, 255, 391, 593, 1030, 1092
NmuCI	GTSAC	4 cut(s)	331, 769, 941, 982
NruI	TCGCGA	1 cut(s)	1074
NsiI	ATGCAT	1 cut(s)	719
PaeR7I	CTCGAG	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	1019
PflFI	GACNNNGTC	1 cut(s)	980
PkrI	GCNGC	6 cut(s)	145, 166, 169, 478, 667, 883
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
Ppu21I	YACGTR	1 cut(s)	920
PshAI	GACNNNNGTC	1 cut(s)	605
PshBI	ATTAAT	1 cut(s)	372
Psp1406I	AACGTT	1 cut(s)	1010
Psp6I	CCWGG	3 cut(s)	304, 596, 959
PspGI	CCWGG	3 cut(s)	304, 596, 959
PspN4I	GGNNCC	6 cut(s)	7, 255, 391, 593, 1030, 1092
PspPI	GGNCC	5 cut(s)	117, 254, 390, 600, 1029
PspXI	VCTCGAGB	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	927
PsyI	GACNNNGTC	1 cut(s)	980
PvuII	CAGCTG	1 cut(s)	338
RruI	TCGCGA	1 cut(s)	1074
RseI	CAYNNNNRTG	1 cut(s)	286
SaqAI	TTAA	6 cut(s)	372, 615, 696, 764, 800, 1055
SatI	GCNGC	6 cut(s)	144, 165, 168, 477, 666, 882
Sau3AI	GATC	3 cut(s)	340, 927, 1036
Sau96I	GGNCC	5 cut(s)	117, 254, 390, 600, 1029
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	4 cut(s)	258, 306, 598, 961
SduI	GDGCHC	3 cut(s)	8, 433, 596
SfaNI	GCATC	3 cut(s)	179, 310, 868
Sfr274I	CTCGAG	1 cut(s)	54
SinI	GGWCC	4 cut(s)	117, 390, 600, 1029
SlaI	CTCGAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	286
SmlI	CTYRAG	2 cut(s)	54, 1121
SmoI	CTYRAG	2 cut(s)	54, 1121
SnaBI	TACGTA	1 cut(s)	920
Sse9I	AATT	5 cut(s)	689, 752, 802, 868, 998
SseBI	AGGCCT	1 cut(s)	1019
SsiI	CCGC	8 cut(s)	123, 144, 162, 165, 233, 292, 645, 665
StuI	AGGCCT	1 cut(s)	1019
StyD4I	CCNGG	4 cut(s)	256, 304, 596, 959
StyI	CCWWGG	2 cut(s)	265, 1041
TaaI	ACNGT	2 cut(s)	331, 531
TaiI	ACGT	2 cut(s)	922, 1013
TaqI	TCGA	1 cut(s)	55
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	5 cut(s)	689, 752, 802, 868, 998
TauI	GCSGC	3 cut(s)	146, 167, 668
Tru1I	TTAA	6 cut(s)	372, 615, 696, 764, 800, 1055
Tru9I	TTAA	6 cut(s)	372, 615, 696, 764, 800, 1055
TscAI	CASTG	2 cut(s)	92, 336
TseFI	GTSAC	4 cut(s)	331, 769, 941, 982
TseI	GCWGC	3 cut(s)	167, 476, 881
Tsp45I	GTSAC	4 cut(s)	331, 769, 941, 982
TspDTI	ATGAA	4 cut(s)	210, 543, 701, 852
TspGWI	ACGGA	3 cut(s)	152, 670, 779
TspRI	CASTG	2 cut(s)	92, 336
Tth111I	GACNNNGTC	1 cut(s)	980
VpaK11BI	GGWCC	4 cut(s)	117, 390, 600, 1029
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	2 cut(s)	802, 998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1039
XhoI	CTCGAG	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.