Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Reverse (-)

11146975 .. 11151227

Gene Structure 4253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G142000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTAGCCATTGCTTGTTGTTTCAGTGGTCTCCCCACGCCATCAATAAGACCTCAAGGACTCGTTGGGCATTTCCCAAATCTTCATTGCCCCTCTCTCAAGTTTGCCCATTTGAGAACCAACTTCAATACACCCATGGCGACAACCCCCTTCCAAGTCTCTGCATCATCATCATCATCCACCATTGGTGCACCAGATGAAGAAAAGGAGGTAGCCTCTTCTGGGAGGGTGGGAGCCAATGACCTGCTGATTGTGGGGCCAGGAGTTCTCGGGCGCTTAGTGGCACAAAAATGGCGGGAGGAGCATCCTGGGTGTGAAATACATGGGCAAACAATGACAGTTGATCACCATGAGGAGTTGAGTAAGGTGGGTATTAATCCATGTTTGAAGGGGACCAAAACCACCCACAAGTTTCCTTATGTAATCTTTTGTGCTCCACCATCAAGAACCTCGGATTATCCTGGTGATGTTAGACTGGCTGCATTGAACTGGAATGGTGAAGGTTCTTTTTTATTTACTTCAAGCTCTGCACCATATGATTGCAACGACAATGGTCCATGTGATGAGGACACCCCAGCAGTGCCAATAGGGAGGAGCCCCAGGACTGATGTCCTTCTTAAAGCAGAAAAAGTAGTGCTGGAGTTTGGGGGTGTTGTTCTTAGATTGGCGGGGCTTTACAAATCAGATAGAGGTGCACATGTTTATTGGTTACACAAGGGGATCGTAGAAACTCGTCCAGATCACGTCCTAAATCTTATACATTATGAGGATGCGGCTTCCCTCTCTGTTGCAATCTTGAAGAAGAGATTACGTAACAGGATCCTCTTGGGTTGTGACAATCATCCATTGTCCAGGCAAGAAGTAATGGACTTGGTTACTAAAAGTGGGAAATTTTCAGGAGTGTTTGAGGCTTTTACAGGAACTACTGATCCTTTGGGCAAGAGATTAAACAACTCAAAAACTCGTGAAGAAATAGGGTGGGAACCAAAATACCCCAGTTTCTCTCAATTCCTTGAGAGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

37.28

Weight (kDa)

7.2

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	252
AciI	CCGC	3 cut(s)	295, 668, 773
AclWI	GGATC	4 cut(s)	728, 814, 827, 923
AcsI	RAATTY	1 cut(s)	890
AfiI	CCNNNNNNNGG	1 cut(s)	222
AflIII	ACRYGT	1 cut(s)	697
AgsI	TTSAA	5 cut(s)	127, 388, 487, 522, 799
AjiI	CACGTC	1 cut(s)	745
AjnI	CCWGG	5 cut(s)	259, 307, 460, 599, 851
AloI	GAACNNNNNNTCC	2 cut(s)	913, 945
AluBI	AGCT	1 cut(s)	525
AluI	AGCT	1 cut(s)	525
Alw21I	GWGCWC	3 cut(s)	193, 436, 697
Alw26I	GTCTC	2 cut(s)	35, 163
Alw44I	GTGCAC	2 cut(s)	189, 693
AlwI	GGATC	4 cut(s)	728, 814, 827, 923
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	257
ApaLI	GTGCAC	2 cut(s)	189, 693
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	1 cut(s)	890
AseI	ATTAAT	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	257, 393, 554
AsuHPI	GGTGA	3 cut(s)	338, 476, 509
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	393, 554
BaeGI	GKGCMC	2 cut(s)	193, 697
BamHI	GGATCC	1 cut(s)	819
BanII	GRGCYC	1 cut(s)	599
BauI	CACGAG	1 cut(s)	963
Bbv12I	GWGCWC	3 cut(s)	193, 436, 697
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	2 cut(s)	49, 448
BciT130I	CCWGG	5 cut(s)	261, 309, 462, 601, 853
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	35, 163
BfoI	RGCGCY	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	2 cut(s)	480, 774
BlsI	GCNGC	2 cut(s)	481, 775
Bme1390I	CCNGG	5 cut(s)	261, 309, 462, 601, 853
Bme18I	GGWCC	2 cut(s)	393, 554
BmeT110I	CYCGRG	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	745
BmgT120I	GGNCC	3 cut(s)	257, 393, 554
BmiI	GGNNCC	6 cut(s)	235, 258, 394, 596, 821, 984
BmrFI	CCNGG	5 cut(s)	261, 309, 462, 601, 853
BmrI	ACTGGG	1 cut(s)	990
BmsI	GCATC	3 cut(s)	173, 313, 760
BmuI	ACTGGG	1 cut(s)	990
BoxI	GACNNNNGTC	2 cut(s)	552, 608
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	659
BpuEI	CTTGAG	2 cut(s)	39, 83
BsaAI	YACGTR	1 cut(s)	812
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	4 cut(s)	135, 308, 450, 599
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse1I	ACTGG	3 cut(s)	480, 494, 996
Bse3DI	GCAATG	2 cut(s)	9, 85
BseBI	CCWGG	5 cut(s)	261, 309, 462, 601, 853
BseDI	CCNNGG	4 cut(s)	135, 308, 450, 599
BseGI	GGATG	4 cut(s)	176, 304, 775, 841
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	2 cut(s)	9, 85
BseNI	ACTGG	3 cut(s)	480, 494, 996
BseRI	GAGGAG	3 cut(s)	314, 368, 607
BseSI	GKGCMC	2 cut(s)	193, 697
BseXI	GCAGC	1 cut(s)	466
BseYI	CCCAGC	1 cut(s)	574
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	1 cut(s)	259
BsiHKAI	GWGCWC	3 cut(s)	193, 436, 697
BsiHKCI	CYCGRG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	2 cut(s)	35, 163
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	4 cut(s)	193, 436, 599, 697
Bsp143I	GATC	5 cut(s)	343, 720, 739, 819, 928
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	3 cut(s)	295, 668, 773
BspANI	GGCC	1 cut(s)	259
BspLI	GGNNCC	6 cut(s)	235, 258, 394, 596, 821, 984
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	4 cut(s)	728, 814, 827, 923
BspTNI	GGTCTC	1 cut(s)	35
BsrDI	GCAATG	2 cut(s)	9, 85
BsrI	ACTGG	3 cut(s)	480, 494, 996
BssECI	CCNNGG	4 cut(s)	135, 308, 450, 599
BssMI	GATC	5 cut(s)	343, 720, 739, 819, 928
BssSI	CACGAG	1 cut(s)	963
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	963
Bst2UI	CCWGG	5 cut(s)	261, 309, 462, 601, 853
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	2 cut(s)	223, 797
BstBAI	YACGTR	1 cut(s)	812
BstDEI	CTNAG	2 cut(s)	277, 659
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	4 cut(s)	176, 304, 775, 841
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	5 cut(s)	346, 723, 742, 822, 931
BstMAI	GTCTC	2 cut(s)	35, 163
BstMBI	GATC	5 cut(s)	343, 720, 739, 819, 928
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	5 cut(s)	261, 309, 462, 601, 853
BstNSI	RCATGY	1 cut(s)	701
BstPAI	GACNNNNGTC	2 cut(s)	552, 608
BstSCI	CCNGG	5 cut(s)	259, 307, 460, 599, 851
BstSLI	GKGCMC	2 cut(s)	193, 697
BstSNI	TACGTA	1 cut(s)	812
BstV1I	GCAGC	1 cut(s)	466
BstX2I	RGATCY	1 cut(s)	819
BstYI	RGATCY	1 cut(s)	819
BsuRI	GGCC	1 cut(s)	259
BtgI	CCRYGG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	745
BtsCI	GGATG	4 cut(s)	176, 304, 775, 841
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	31, 585
BveI	ACCTGC	1 cut(s)	252
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	3 cut(s)	257, 393, 554
CviAII	CATG	6 cut(s)	136, 323, 350, 381, 558, 698
DdeI	CTNAG	2 cut(s)	277, 659
DpnI	GATC	5 cut(s)	345, 722, 741, 821, 930
DpnII	GATC	5 cut(s)	343, 720, 739, 819, 928
Eam1104I	CTCTTC	2 cut(s)	223, 797
EarI	CTCTTC	2 cut(s)	223, 797
Eco105I	TACGTA	1 cut(s)	812
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	393, 554
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	5 cut(s)	259, 307, 460, 599, 851
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	6 cut(s)	139, 326, 353, 384, 561, 701
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	6 cut(s)	135, 322, 349, 380, 557, 697
FauI	CCCGC	2 cut(s)	288, 661
FauNDI	CATATG	1 cut(s)	535
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	480, 774
FokI	GGATG	4 cut(s)	163, 291, 782, 828
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	2 cut(s)	480, 774
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	2 cut(s)	480, 774
GsaI	CCCAGC	1 cut(s)	578
GsuI	CTGGAG	1 cut(s)	659
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	6 cut(s)	139, 326, 353, 384, 561, 701
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	60
HphI	GGTGA	3 cut(s)	338, 476, 509
Hpy166II	GTNNAC	2 cut(s)	191, 695
Hpy188I	TCNGA	2 cut(s)	454, 685
Hpy188III	TCNNGA	5 cut(s)	444, 737, 796, 897, 965
Hpy8I	GTNNAC	2 cut(s)	191, 695
HpyAV	CCTTC	4 cut(s)	160, 382, 494, 623
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	744, 811
HpyCH4V	TGCA	7 cut(s)	164, 191, 482, 530, 543, 695, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	2 cut(s)	277, 659
HpySE526I	ACGT	2 cut(s)	744, 811
Hsp92II	CATG	6 cut(s)	139, 326, 353, 384, 561, 701
HspAI	GCGC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	5 cut(s)	343, 720, 739, 819, 928
LmnI	GCTCC	4 cut(s)	233, 301, 439, 594
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	3 cut(s)	173, 313, 760
MaeII	ACGT	2 cut(s)	744, 811
MaeIII	GTNAC	4 cut(s)	708, 812, 833, 874
MalI	GATC	5 cut(s)	345, 722, 741, 821, 930
MboI	GATC	5 cut(s)	343, 720, 739, 819, 928
MboII	GAAGA	6 cut(s)	74, 210, 212, 811, 814, 980
MflI	RGATCY	1 cut(s)	819
MhlI	GDGCHC	4 cut(s)	193, 436, 599, 697
MluCI	AATT	2 cut(s)	890, 1007
MlyI	GAGTC	1 cut(s)	54
MseI	TTAA	3 cut(s)	375, 618, 947
MslI	CAYNNNNRTG	1 cut(s)	289
MspR9I	CCNGG	5 cut(s)	261, 309, 462, 601, 853
MvaI	CCWGG	5 cut(s)	261, 309, 462, 601, 853
MwoI	GCNNNNNNNGC	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	5 cut(s)	343, 720, 739, 819, 928
NlaIII	CATG	6 cut(s)	139, 326, 353, 384, 561, 701
NlaIV	GGNNCC	6 cut(s)	235, 258, 394, 596, 821, 984
NmuCI	GTSAC	1 cut(s)	833
NspI	RCATGY	1 cut(s)	701
PciI	ACATGT	1 cut(s)	697
PkrI	GCNGC	2 cut(s)	481, 775
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
Ppu21I	YACGTR	1 cut(s)	812
PscI	ACATGT	1 cut(s)	697
PshAI	GACNNNNGTC	2 cut(s)	552, 608
PshBI	ATTAAT	1 cut(s)	375
Psp6I	CCWGG	5 cut(s)	259, 307, 460, 599, 851
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	5 cut(s)	259, 307, 460, 599, 851
PspN4I	GGNNCC	6 cut(s)	235, 258, 394, 596, 821, 984
PspPI	GGNCC	3 cut(s)	257, 393, 554
PsuI	RGATCY	1 cut(s)	819
RseI	CAYNNNNRTG	1 cut(s)	289
SaqAI	TTAA	3 cut(s)	375, 618, 947
SatI	GCNGC	2 cut(s)	480, 774
Sau3AI	GATC	5 cut(s)	343, 720, 739, 819, 928
Sau96I	GGNCC	3 cut(s)	257, 393, 554
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	5 cut(s)	261, 309, 462, 601, 853
SduI	GDGCHC	4 cut(s)	193, 436, 599, 697
SfaNI	GCATC	3 cut(s)	173, 313, 760
SinI	GGWCC	2 cut(s)	393, 554
SmiMI	CAYNNNNRTG	1 cut(s)	289
SmlI	CTYRAG	3 cut(s)	54, 98, 1013
SmoI	CTYRAG	3 cut(s)	54, 98, 1013
SnaBI	TACGTA	1 cut(s)	812
Sse9I	AATT	2 cut(s)	890, 1007
SsiI	CCGC	3 cut(s)	295, 668, 773
StyD4I	CCNGG	5 cut(s)	259, 307, 460, 599, 851
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	747, 814
TasI	AATT	2 cut(s)	890, 1007
TauI	GCSGC	1 cut(s)	776
Tru1I	TTAA	3 cut(s)	375, 618, 947
Tru9I	TTAA	3 cut(s)	375, 618, 947
TscAI	CASTG	2 cut(s)	31, 585
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	2 cut(s)	74, 213
TspRI	CASTG	2 cut(s)	31, 585
VneI	GTGCAC	2 cut(s)	189, 693
VpaK11BI	GGWCC	2 cut(s)	393, 554
VspI	ATTAAT	1 cut(s)	375
XapI	RAATTY	1 cut(s)	890
XceI	RCATGY	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.