Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025888.1

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 737

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025888.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 403 bp

gcatccgggttgtgaaatatatgggcaaacagtcaccgttgatcaccatgaggagttgatcaaggtgggtatcaatccatgtttgaaggggaccaaaacggaccataagtttcctaatgttattttctgtgctccaccatctagaacctcggattatcccggtgatgttcgagtggctgcattgaactggaatggtgaaggttctttcttatttacatcaagctctgcaccgtatgattgcaatgacaacagtccatgtgatgaggatactccagtagtgccaataggaaggagccccaggaccgatgtccttcttaatgcagaaaaagtggtgctggagtttggtggtgttgttcttagattggcagggctttacatatcctttatggaattggaattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.56

Weight (kDa)

4.79

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	86, 185
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw21I	GWGCWC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	396
AspS9I	GGNCC	3 cut(s)	91, 101, 301
AsuC2I	CCSGG	2 cut(s)	7, 160
AsuHPI	GGTGA	4 cut(s)	26, 36, 174, 207
AvaII	GGWCC	3 cut(s)	91, 101, 301
BaeI	ACNNNNGTAYC	2 cut(s)	259, 292
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	299
BciVI	GTATCC	1 cut(s)	260
BclI	TGATCA	2 cut(s)	41, 58
BcnI	CCSGG	2 cut(s)	7, 160
BfaI	CTAG	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	3 cut(s)	7, 160, 299
Bme18I	GGWCC	3 cut(s)	91, 101, 301
BmgT120I	GGNCC	3 cut(s)	91, 101, 301
BmiI	GGNNCC	2 cut(s)	92, 294
BmrFI	CCNGG	3 cut(s)	7, 160, 299
BmsI	GCATC	1 cut(s)	11
BoxI	GACNNNNGTC	2 cut(s)	250, 306
BpmI	CTGGAG	2 cut(s)	256, 357
BpuMI	CCSGG	2 cut(s)	7, 160
BsaJI	CCNNGG	2 cut(s)	148, 297
Bse1I	ACTGG	2 cut(s)	192, 273
Bse3DI	GCAATG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	148, 297
BseMI	GCAATG	1 cut(s)	248
BseNI	ACTGG	2 cut(s)	192, 273
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	6, 160
BslFI	GGGAC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	134, 297
Bsp143I	GATC	2 cut(s)	41, 58
BspLI	GGNNCC	2 cut(s)	92, 294
BsrDI	GCAATG	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	192, 273
BssECI	CCNNGG	2 cut(s)	148, 297
BssMI	GATC	2 cut(s)	41, 58
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	4 cut(s)	32, 38, 232, 252
BstDEI	CTNAG	1 cut(s)	357
BstKTI	GATC	2 cut(s)	44, 61
BstMBI	GATC	2 cut(s)	41, 58
BstNI	CCWGG	1 cut(s)	299
BstPAI	GACNNNNGTC	2 cut(s)	250, 306
BstSCI	CCNGG	3 cut(s)	5, 158, 297
BstV1I	GCAGC	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	260
Cfr13I	GGNCC	3 cut(s)	91, 101, 301
CviAII	CATG	3 cut(s)	48, 79, 256
CviJI	RGCY	4 cut(s)	177, 223, 295, 371
CviKI_1	RGCY	4 cut(s)	177, 223, 295, 371
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	43, 60
DpnII	GATC	2 cut(s)	41, 58
Eco24I	GRGCYC	1 cut(s)	297
Eco47I	GGWCC	3 cut(s)	91, 101, 301
EcoRI	GAATTC	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	3 cut(s)	51, 82, 259
FaiI	YATR	9 cut(s)	20, 22, 49, 80, 106, 235, 257, 378, 387
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	3 cut(s)	47, 78, 255
FbaI	TGATCA	2 cut(s)	41, 58
Fnu4HI	GCNGC	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	142
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	2 cut(s)	256, 357
HapII	CCGG	2 cut(s)	6, 160
Hin1II	CATG	3 cut(s)	51, 82, 259
HpaII	CCGG	2 cut(s)	6, 160
HphI	GGTGA	4 cut(s)	26, 36, 174, 207
Hpy188I	TCNGA	2 cut(s)	152, 402
Hpy188III	TCNNGA	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	80, 192, 283, 321
HpyCH4III	ACNGT	4 cut(s)	32, 38, 232, 252
HpyCH4V	TGCA	4 cut(s)	180, 228, 241, 321
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	3 cut(s)	51, 82, 259
Ksp22I	TGATCA	2 cut(s)	41, 58
Kzo9I	GATC	2 cut(s)	41, 58
LmnI	GCTCC	2 cut(s)	137, 292
LpnPI	CCDG	8 cut(s)	19, 173, 173, 284, 286, 311, 321, 352
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	11
MaeI	CTAG	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	2 cut(s)	43, 60
MboI	GATC	2 cut(s)	41, 58
MhlI	GDGCHC	2 cut(s)	134, 297
MluCI	AATT	2 cut(s)	390, 396
MnlI	CCTC	3 cut(s)	44, 158, 257
MseI	TTAA	1 cut(s)	316
MspI	CCGG	2 cut(s)	6, 160
MspR9I	CCNGG	3 cut(s)	7, 160, 299
MvaI	CCWGG	1 cut(s)	299
NciI	CCSGG	2 cut(s)	7, 160
NdeII	GATC	2 cut(s)	41, 58
NlaIII	CATG	3 cut(s)	51, 82, 259
NlaIV	GGNNCC	2 cut(s)	92, 294
NmuCI	GTSAC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	179
PshAI	GACNNNNGTC	2 cut(s)	250, 306
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	92, 294
PspPI	GGNCC	3 cut(s)	91, 101, 301
SaqAI	TTAA	1 cut(s)	316
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	2 cut(s)	41, 58
Sau96I	GGNCC	3 cut(s)	91, 101, 301
ScrFI	CCNGG	3 cut(s)	7, 160, 299
SduI	GDGCHC	2 cut(s)	134, 297
SetI	ASST	4 cut(s)	67, 150, 203, 225
SfaNI	GCATC	1 cut(s)	11
SinI	GGWCC	3 cut(s)	91, 101, 301
Sse9I	AATT	2 cut(s)	390, 396
SspMI	CTAG	1 cut(s)	142
StyD4I	CCNGG	3 cut(s)	5, 158, 297
TaaI	ACNGT	4 cut(s)	32, 38, 232, 252
TaqI	TCGA	1 cut(s)	170
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	2 cut(s)	390, 396
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	114
VpaK11BI	GGWCC	3 cut(s)	91, 101, 301
XapI	RAATTY	1 cut(s)	396
XbaI	TCTAGA	1 cut(s)	141
XspI	CTAG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.