Rmu_sc0006442.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006442.1
OG0007276
Physical Location & Seq
Forward (+)
20313 .. 21297
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006442.1_g000002.1.cds

Sequence Viewer

Length: 480 bp
atggccaccaccccaatccaagtctctgcttcttcatcatcatcatcatcacccaccattcgtaaagttcctctctttagtgctccttattgcgcaatgtttgatgggttggttggtgaaagggtagctgaaaagaaaggtgcaggctttgctggaatggtgggagccaatgacctgttgattgttgggccgggagtacttgggcgattagttgcagagaaatggcggcaggagcatccgggttgtcaaatatatgggcaaacagtgaccgttgatcaccatgaggagttgatcaaggcgggtattaatccatgtttgaagggaatcaaaatggaccataagtttcctaatgtcattttccgtgctctaccatctagaacctccgattatccggatgatgttcggttaacttgtgacggtggacactccagtagtgccaataggaaggagccccaggacgtcgacgtccttaatgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.03

Weight (kDa)

6.95

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 464
AatII GACGTC 2 cut(s) 462, 468
Acc16I TGCGCA 1 cut(s) 94
AccI GTMKAC 1 cut(s) 462
AccIII TCCGGA 1 cut(s) 391
AciI CCGC 2 cut(s) 226, 299
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 459, 465
AfaI GTAC 1 cut(s) 198
AgsI TTSAA 1 cut(s) 319
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw21I GWGCWC 2 cut(s) 85, 367
Alw26I GTCTC 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 391
AoxI GGCC 2 cut(s) 3, 188
AseI ATTAAT 1 cut(s) 306
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 188, 334
AsuC2I CCSGG 2 cut(s) 192, 240
AsuHPI GGTGA 3 cut(s) 42, 128, 269
AvaII GGWCC 1 cut(s) 334
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 453
Bbv12I GWGCWC 2 cut(s) 85, 367
BccI CCATC 2 cut(s) 98, 379
BciT130I CCWGG 1 cut(s) 455
BclI TGATCA 2 cut(s) 274, 291
BcnI CCSGG 2 cut(s) 192, 240
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 375
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
BmcAI AGTACT 1 cut(s) 198
Bme1390I CCNGG 3 cut(s) 192, 240, 455
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 188, 334
BmiI GGNNCC 2 cut(s) 166, 450
BmrFI CCNGG 3 cut(s) 192, 240, 455
BmsI GCATC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 412
BpuMI CCSGG 2 cut(s) 192, 240
BsaHI GRCGYC 2 cut(s) 459, 465
BsaJI CCNNGG 1 cut(s) 453
BsaWI WCCGGW 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 102
BseAI TCCGGA 1 cut(s) 391
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 2 cut(s) 235, 400
BseMI GCAATG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 429
BseRI GAGGAG 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 162
BshFI GGCC 2 cut(s) 5, 190
BsiHKAI GWGCWC 2 cut(s) 85, 367
BsiSI CCGG 3 cut(s) 191, 239, 392
BsmAI GTCTC 1 cut(s) 28
BsnI GGCC 2 cut(s) 5, 190
Bsp1286I GDGCHC 3 cut(s) 85, 367, 453
Bsp13I TCCGGA 1 cut(s) 391
Bsp143I GATC 2 cut(s) 274, 291
BspACI CCGC 2 cut(s) 226, 299
BspANI GGCC 2 cut(s) 5, 190
BspEI TCCGGA 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 166, 450
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 429
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 2 cut(s) 274, 291
BssNI GRCGYC 2 cut(s) 459, 465
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 3 cut(s) 265, 271, 419
BstACI GRCGYC 2 cut(s) 459, 465
BstAPI GCANNNNNTGC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 145
BstF5I GGATG 2 cut(s) 235, 400
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 2 cut(s) 277, 294
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 2 cut(s) 274, 291
BstMWI GCNNNNNNNGC 2 cut(s) 149, 232
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 3 cut(s) 190, 238, 453
BsuRI GGCC 2 cut(s) 5, 190
BtsCI GGATG 2 cut(s) 235, 400
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 145
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 188, 334
Csp6I GTAC 1 cut(s) 197
CviAII CATG 2 cut(s) 281, 312
CviJI RGCY 6 cut(s) 5, 128, 147, 167, 190, 451
CviKI_1 RGCY 6 cut(s) 5, 128, 147, 167, 190, 451
CviQI GTAC 1 cut(s) 197
DpnI GATC 2 cut(s) 276, 293
DpnII GATC 2 cut(s) 274, 291
DrdI GACNNNNNNGTC 1 cut(s) 464
DseDI GACNNNNNNGTC 1 cut(s) 464
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 453
FaeI CATG 2 cut(s) 284, 315
FaiI YATR 5 cut(s) 253, 255, 282, 313, 339
FatI CATG 2 cut(s) 280, 311
FauI CCCGC 1 cut(s) 292
FbaI TGATCA 2 cut(s) 274, 291
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 2 cut(s) 222, 407
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 1 cut(s) 375
FspI TGCGCA 1 cut(s) 94
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 412
HaeIII GGCC 2 cut(s) 5, 190
HapII CCGG 3 cut(s) 191, 239, 392
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 2 cut(s) 459, 465
Hin1II CATG 2 cut(s) 284, 315
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 2 cut(s) 408, 463
HindII GTYRAC 2 cut(s) 408, 463
HinfI GANTC 1 cut(s) 324
HpaI GTTAAC 1 cut(s) 408
HpaII CCGG 3 cut(s) 191, 239, 392
HphI GGTGA 3 cut(s) 42, 128, 269
Hpy166II GTNNAC 3 cut(s) 408, 422, 463
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 2 cut(s) 375, 392
Hpy8I GTNNAC 3 cut(s) 408, 422, 463
Hpy99I CGWCG 2 cut(s) 464, 467
HpyAV CCTTC 2 cut(s) 313, 439
HpyCH4III ACNGT 3 cut(s) 265, 271, 419
HpyCH4IV ACGT 2 cut(s) 459, 465
HpyCH4V TGCA 2 cut(s) 143, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 232
HpySE526I ACGT 2 cut(s) 459, 465
Hsp92I GRCGYC 2 cut(s) 459, 465
Hsp92II CATG 2 cut(s) 284, 315
HspAI GCGC 1 cut(s) 93
Kpn2I TCCGGA 1 cut(s) 391
Ksp22I TGATCA 2 cut(s) 274, 291
KspAI GTTAAC 1 cut(s) 408
Kzo9I GATC 2 cut(s) 274, 291
LmnI GCTCC 4 cut(s) 88, 164, 232, 448
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 375
MaeII ACGT 2 cut(s) 459, 465
MaeIII GTNAC 2 cut(s) 265, 413
MalI GATC 2 cut(s) 276, 293
MboI GATC 2 cut(s) 274, 291
MboII GAAGA 1 cut(s) 24
MhlI GDGCHC 3 cut(s) 85, 367, 453
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 81, 277, 391
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 391
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 306, 407, 471, 478
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 191, 239, 392
MspR9I CCNGG 3 cut(s) 192, 240, 455
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 149, 232
NciI CCSGG 2 cut(s) 192, 240
NdeII GATC 2 cut(s) 274, 291
NlaIII CATG 2 cut(s) 284, 315
NlaIV GGNNCC 2 cut(s) 166, 450
NmuCI GTSAC 2 cut(s) 265, 413
NsbI TGCGCA 1 cut(s) 94
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 1 cut(s) 228
PshBI ATTAAT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 166, 450
PspPI GGNCC 2 cut(s) 188, 334
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SalI GTCGAC 1 cut(s) 461
SaqAI TTAA 4 cut(s) 306, 407, 471, 478
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 2 cut(s) 274, 291
Sau96I GGNCC 2 cut(s) 188, 334
ScaI AGTACT 1 cut(s) 198
ScrFI CCNGG 3 cut(s) 192, 240, 455
SduI GDGCHC 3 cut(s) 85, 367, 453
SetI ASST 6 cut(s) 130, 142, 177, 383, 462, 468
SfaNI GCATC 1 cut(s) 244
SgrDI CGTCGACG 1 cut(s) 461
SinI GGWCC 1 cut(s) 334
SsiI CCGC 2 cut(s) 226, 299
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 3 cut(s) 190, 238, 453
TaaI ACNGT 3 cut(s) 265, 271, 419
TaiI ACGT 2 cut(s) 462, 468
TaqI TCGA 1 cut(s) 462
TatI WGTACW 1 cut(s) 196
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 4 cut(s) 306, 407, 471, 478
Tru9I TTAA 4 cut(s) 306, 407, 471, 478
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 2 cut(s) 265, 413
Tsp45I GTSAC 2 cut(s) 265, 413
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 334
VspI ATTAAT 1 cut(s) 306
XbaI TCTAGA 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 1 cut(s) 375
ZraI GACGTC 2 cut(s) 460, 466
ZrmI AGTACT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.